Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq52 774 0.0 >seq52 Length=149364 Score = 774 bits (858), Expect = 0.0 Identities = 769/993 (77%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||||||||| || || || ||||| || |||||||||| || || | Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| | | | |||| ||| || || |||||||| || |||| ||||| Sbjct 86129 ATGAT-CCCTACTTTATTAACAGCTACTTCAGTATTTATCATCGCATTTATCGCAGCTCC 86071 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||||| || |||||||| ||||| || || || | ||||| | | ||||||||||| Sbjct 86070 GCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAA 86011 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 |||||| |||||||| |||| || ||||||||||||||||| | ||||||||||| || Sbjct 86010 TATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAAT 85951 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||||| ||| || || ||| | ||||| |||||||||| |||||| | || Sbjct 85950 TTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGT 85891 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||| ||| | | ||| | | | | ||||||||||||||||||||| | |||| || Sbjct 85890 TTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCG 85831 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | ||||||||||||||||| || || ||||| || || || |||||||| | || Sbjct 85830 TTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 85771 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| | | ||||| |||||||||||||||||||||||| |||||| | || || Sbjct 85770 TGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 85711 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || ||||||| |||| | || ||||| ||||||||||||||||| |||||||| Sbjct 85710 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 85651 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 ||||||||||| || || || ||||| ||||| ||||| | ||| ||| |||||||| Sbjct 85650 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 85591 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| || || |||||||| | ||||||| || || ||||| || || ||| | || Sbjct 85590 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 85531 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||||| || ||||| ||||||||||| |||||||||||||| ||||| || ||||| || Sbjct 85530 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 85471 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 |||| | ||||||||||| ||||| ||||||||||| ||||| | || |||||| | || Sbjct 85470 TCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAGC 85411 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| ||||| ||||| ||||| |||||| | || || || ||||||||||| Sbjct 85410 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 85351 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 | | || ||||||||||||||||| || | | ||| || |||||||| ||||||| Sbjct 85350 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 85291 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||||||| || |||||||||| || || |||||||| ||||| |||||||| || Sbjct 85290 TTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 85231 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 |||||||||||| | || | |||| || ||| Sbjct 85230 TCACAACTTCCCATTAGATTTAGCTGTTGTTGA 85198 Score = 379 bits (420), Expect = 2e-100 Identities = 515/711 (72%), Gaps = 14/711 (2%) Strand=Plus/Minus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||||||| ||||| | || ||||||||| | ||||||||||| ||| | || ||| Sbjct 18098 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 18039 Query 165207 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265 || || || || || || || || || || || || ||||| |||||| |||| || || Sbjct 18038 TCAGGG-TTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAAC 17980 Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAA 165324 ||| || || ||| |||||||||||| || | || ||| ||| | || || || || Sbjct 17979 TACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAA 17920 Query 165325 ACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 165383 ||||||| | || || ||||| |||||||| | ||||||||||||| | | | Sbjct 17919 --TTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTC 17862 Query 165384 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 165443 || ||||| || || ||||||| || |||| || ||||| |||||||| || || ||| Sbjct 17861 CTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGG 17802 Query 165444 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 165503 || ||||| || || ||||| || ||||| || || ||||| |||||||| ||||||||| Sbjct 17801 ACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAA 17742 Query 165504 CTGGCACGACTTATCGGT----ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 165559 | ||||| || || ||||| |||||||| || ||||| || || | || || Sbjct 17741 ATTGCACG----TTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAAT 17686 Query 165560 TGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGC 165619 | ||||||||||| ||| || | || || ||| | |||||||| |||||||| || Sbjct 17685 TTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGC 17626 Query 165620 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 165679 ||| || || || || ||||| ||||||||| | | ||| ||||||| |||||||| Sbjct 17625 ACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAA 17566 Query 165680 CTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCT 165739 |||||| | || || || || |||||||| ||||| ||| | | || | || | || Sbjct 17565 CTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACT 17506 Query 165740 TTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAA 165799 || ||| |||||||| | || ||||| ||||| | | ||| |||||||| ||||| Sbjct 17505 TTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAA 17446 Query 165800 CACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGT 165850 ||| ||| || ||| | ||||| | || ||||| || || ||||| Sbjct 17445 CACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 17395 Score = 379 bits (420), Expect = 2e-100 Identities = 515/711 (72%), Gaps = 14/711 (2%) Strand=Plus/Minus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||||||| ||||| | || ||||||||| | ||||||||||| ||| | || ||| Sbjct 147543 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 147484 Query 165207 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265 || || || || || || || || || || || || ||||| |||||| |||| || || Sbjct 147483 TCAGGG-TTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAAC 147425 Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAA 165324 ||| || || ||| |||||||||||| || | || ||| ||| | || || || || Sbjct 147424 TACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAA 147365 Query 165325 ACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 165383 ||||||| | || || ||||| |||||||| | ||||||||||||| | | | Sbjct 147364 --TTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTC 147307 Query 165384 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 165443 || ||||| || || ||||||| || |||| || ||||| |||||||| || || ||| Sbjct 147306 CTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGG 147247 Query 165444 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 165503 || ||||| || || ||||| || ||||| || || ||||| |||||||| ||||||||| Sbjct 147246 ACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAA 147187 Query 165504 CTGGCACGACTTATCGGT----ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 165559 | ||||| || || ||||| |||||||| || ||||| || || | || || Sbjct 147186 ATTGCACG----TTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAAT 147131 Query 165560 TGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGC 165619 | ||||||||||| ||| || | || || ||| | |||||||| |||||||| || Sbjct 147130 TTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGC 147071 Query 165620 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 165679 ||| || || || || ||||| ||||||||| | | ||| ||||||| |||||||| Sbjct 147070 ACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAA 147011 Query 165680 CTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCT 165739 |||||| | || || || || |||||||| ||||| ||| | | || | || | || Sbjct 147010 CTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACT 146951 Query 165740 TTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAA 165799 || ||| |||||||| | || ||||| ||||| | | ||| |||||||| ||||| Sbjct 146950 TTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAA 146891 Query 165800 CACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGT 165850 ||| ||| || ||| | ||||| | || ||||| || || ||||| Sbjct 146890 CACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 146840 Score = 223 bits (246), Expect = 4e-53 Identities = 240/318 (75%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 165852 ACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTT 165911 ||||| || ||||||||||| || ||||||||| | ||||| ||||| |||||| | Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 165912 CACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATT 165971 |||||||||||| | |||||||| || | || ||||||| ||| | |||||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 165972 GGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAG 166031 ||| | || | || | ||||| |||||||| || || || || ||| | ||||| || Sbjct 16228 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 16169 Query 166032 GATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCC 166091 ||||| || |||||||| |||||||| ||||| || || | || ||||| | ||||| Sbjct 16168 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 16109 Query 166092 TGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCA 166151 ||| ||||| || ||| || |||||||| || |||| |||||||| || || || ||| Sbjct 16108 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 16049 Query 166152 AGAGGCAACGCACTTTAA 166169 | || ||||| |||||| Sbjct 16048 CGTGGAAACGCTCTTTAA 16031 Score = 223 bits (246), Expect = 4e-53 Identities = 240/318 (75%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 165852 ACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTT 165911 ||||| || ||||||||||| || ||||||||| | ||||| ||||| |||||| | Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 165912 CACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATT 165971 |||||||||||| | |||||||| || | || ||||||| ||| | |||||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 165972 GGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAG 166031 ||| | || | || | ||||| |||||||| || || || || ||| | ||||| || Sbjct 145673 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 145614 Query 166032 GATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCC 166091 ||||| || |||||||| |||||||| ||||| || || | || ||||| | ||||| Sbjct 145613 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 145554 Query 166092 TGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCA 166151 ||| ||||| || ||| || |||||||| || |||| |||||||| || || || ||| Sbjct 145553 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 145494 Query 166152 AGAGGCAACGCACTTTAA 166169 | || ||||| |||||| Sbjct 145493 CGTGGAAACGCTCTTTAA 145476 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 160906 CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGTTCGAT 160963 |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 38281 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 38340 Query 160964 CCCTGTCACCCCGA 160977 ||||||| ||||| Sbjct 38341 TCCTGTCATCCCGA 38354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557652301825320