Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq52 783 0.0 >seq52 Length=149364 Score = 783 bits (868), Expect = 0.0 Identities = 774/996 (78%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || ||| | |||||||| ||| | || ||| | || |||||||||| ||||| | Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | ||| || || || || ||| |||| || |||| ||||| Sbjct 86129 ATGATCCCTACTTTATTAACAGCTACT-TCAGTATTTATCATCGCATTTATCGCAGCTCC 86071 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||||| || ||||| || |||||||| || || | ||||| | | ||||| ||||| Sbjct 86070 GCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAA 86011 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 ||||| |||||||| || |||| ||||||||||||| ||| | |||||||| || || Sbjct 86010 TATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAAT 85951 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||||||||||| ||||||||| | |||||||||||||||| |||||| | | Sbjct 85950 TTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGT 85891 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | ||| ||| | | || | | | ||||||||||||||||||||||| | |||| || Sbjct 85890 TTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCG 85831 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 ||||||||||||| |||||| || || ||||| || ||||| || ||||| | || Sbjct 85830 TTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 85771 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||||||| | ||||||| |||||||||||||||||||||| | |||||| | ||||| Sbjct 85770 TGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 85711 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | ||| || ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 85710 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 85651 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 ||||| ||| | || || |||||||| ||||||||||| | ||| ||| |||||||| Sbjct 85650 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 85591 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTAT 178254 ||| || || ||||| || | |||||||||| || || |||||| |||| ||| | Sbjct 85590 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAA--TCAGCTAACGAA 85533 Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 |||||||| ||||||||||||||||| || |||||||||||||| |||||||| |||||| Sbjct 85532 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTC 85473 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 ||||| | || |||||||| || || ||||||||||| ||||| | || |||||| | Sbjct 85472 GGTCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTA 85413 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || ||||| ||||| ||||| |||||||||||| | ||| || || ||||||||| Sbjct 85412 GCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTC 85353 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||| | || ||||||||||||||||| || | | ||| || || || | ||| Sbjct 85352 AACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAAC 85293 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||||||| || |||||||||| |||||||||||||| ||||| |||||||| Sbjct 85292 ACTTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 85233 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||||||||||| | || | |||| || |||| Sbjct 85232 GCTCACAACTTCCCATTAGATTTAGCTGTTGTTGAA 85197 Score = 448 bits (496), Expect = 6e-121 Identities = 535/725 (74%), Gaps = 1/725 (0%) Strand=Plus/Minus Query 178814 AACACTACAGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCG 178873 || ||| ||||| || | || |||||||||||| | |||||||||||| ||||| || Sbjct 18116 AAAACTCAAGAAA-AACGAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCG 18058 Query 178874 GTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGG 178933 ||||| ||| | || |||||||| | | | || ||||| || ||| ||||||| || Sbjct 18057 TTTCGTCTTTCTAGGATGGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGG 17998 Query 178934 CGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTC 178993 |||||| | || || || ||||| || || || ||||||||||| || | || ||||| Sbjct 17997 TGGTTGGTTTACAGGAACTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTC 17938 Query 178994 GTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGG 179053 ||| | || |||||||||||| | || || ||||| |||||||| || | | | || Sbjct 17937 ATATTTAGAAGGATGTAATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGG 17878 Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 ||||| || | | || ||||| ||||||||||| || |||||| || ||| || Sbjct 17877 TCATTCTTTATTATTCCTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCA 17818 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 |||||| || |||||| | ||||| || || |||||||| || ||||| || ||||| || Sbjct 17817 ACTTGGTGGTCTATGGACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTAT 17758 Query 179174 GCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTT 179233 |||||| ||||||||||| |||||| ||| ||||| |||||||| ||||| || || Sbjct 17757 GCTTCGTCAGTTTGAAATTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATT 17698 Query 179234 TTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTC 179293 ||| | |||||| |||| || || ||||| || | || || ||| | ||||| || Sbjct 17697 TTCAGCACCAATTTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGG 17638 Query 179294 GTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACA 179353 ||||||||||| || ||||| ||||| || |||||||| ||| | | ||| | || Sbjct 17637 TTGGTTCTTTGCACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCA 17578 Query 179354 GGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGG 179413 || ||||| |||||||| | ||||| ||||| |||||||||||||| ||| | || || Sbjct 17577 AGGTTTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGG 17518 Query 179414 CGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAG 179473 | || | |||||||| |||||||| || || ||||| || || || ||||| || | Sbjct 17517 AGCTGCTCTACTTTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGG 17458 Query 179474 TGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGAT 179533 ||| |||| |||||| || || | || || |||| || || || || || || Sbjct 17457 TGATGGTGCAAACACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAAT 17398 Query 179534 GGTTA 179538 ||||| Sbjct 17397 GGTTA 17393 Score = 448 bits (496), Expect = 6e-121 Identities = 535/725 (74%), Gaps = 1/725 (0%) Strand=Plus/Minus Query 178814 AACACTACAGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCG 178873 || ||| ||||| || | || |||||||||||| | |||||||||||| ||||| || Sbjct 147561 AAAACTCAAGAAA-AACGAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCG 147503 Query 178874 GTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGG 178933 ||||| ||| | || |||||||| | | | || ||||| || ||| ||||||| || Sbjct 147502 TTTCGTCTTTCTAGGATGGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGG 147443 Query 178934 CGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTC 178993 |||||| | || || || ||||| || || || ||||||||||| || | || ||||| Sbjct 147442 TGGTTGGTTTACAGGAACTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTC 147383 Query 178994 GTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGG 179053 ||| | || |||||||||||| | || || ||||| |||||||| || | | | || Sbjct 147382 ATATTTAGAAGGATGTAATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGG 147323 Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 ||||| || | | || ||||| ||||||||||| || |||||| || ||| || Sbjct 147322 TCATTCTTTATTATTCCTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCA 147263 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 |||||| || |||||| | ||||| || || |||||||| || ||||| || ||||| || Sbjct 147262 ACTTGGTGGTCTATGGACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTAT 147203 Query 179174 GCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTT 179233 |||||| ||||||||||| |||||| ||| ||||| |||||||| ||||| || || Sbjct 147202 GCTTCGTCAGTTTGAAATTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATT 147143 Query 179234 TTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTC 179293 ||| | |||||| |||| || || ||||| || | || || ||| | ||||| || Sbjct 147142 TTCAGCACCAATTTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGG 147083 Query 179294 GTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACA 179353 ||||||||||| || ||||| ||||| || |||||||| ||| | | ||| | || Sbjct 147082 TTGGTTCTTTGCACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCA 147023 Query 179354 GGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGG 179413 || ||||| |||||||| | ||||| ||||| |||||||||||||| ||| | || || Sbjct 147022 AGGTTTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGG 146963 Query 179414 CGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAG 179473 | || | |||||||| |||||||| || || ||||| || || || ||||| || | Sbjct 146962 AGCTGCTCTACTTTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGG 146903 Query 179474 TGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGAT 179533 ||| |||| |||||| || || | || || |||| || || || || || || Sbjct 146902 TGATGGTGCAAACACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAAT 146843 Query 179534 GGTTA 179538 ||||| Sbjct 146842 GGTTA 146838 Score = 205 bits (226), Expect = 1e-47 Identities = 236/315 (75%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 179538 ACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTA 179597 ||||| || ||||||||||| || || |||||| | || || ||||| |||||| || Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 179598 CATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATT 179657 || ||||||||||| |||||||| || | |||||||||| | |||||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 179658 GGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGA 179716 ||| | || |||| |||| | || ||||| || ||||||||||| || | || || || Sbjct 16228 GGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGA 16170 Query 179717 GGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGC 179776 |||||||| || || || |||||||| || || || || || || |||||| | ||||| Sbjct 16169 AGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGC 16110 Query 179777 TTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCC 179836 ||||||||| | ||||| || |||||||| ||||||| ||||| || || || || Sbjct 16109 TTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACC 16050 Query 179837 AAGAGGCAACGCTCT 179851 | | || |||||||| Sbjct 16049 ACGTGGAAACGCTCT 16035 Score = 205 bits (226), Expect = 1e-47 Identities = 236/315 (75%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 179538 ACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTA 179597 ||||| || ||||||||||| || || |||||| | || || ||||| |||||| || Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 179598 CATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATT 179657 || ||||||||||| |||||||| || | |||||||||| | |||||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 179658 GGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGA 179716 ||| | || |||| |||| | || ||||| || ||||||||||| || | || || || Sbjct 145673 GGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGA 145615 Query 179717 GGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGC 179776 |||||||| || || || |||||||| || || || || || || |||||| | ||||| Sbjct 145614 AGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGC 145555 Query 179777 TTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCC 179836 ||||||||| | ||||| || |||||||| ||||||| ||||| || || || || Sbjct 145554 TTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACC 145495 Query 179837 AAGAGGCAACGCTCT 179851 | | || |||||||| Sbjct 145494 ACGTGGAAACGCTCT 145480 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 18368 AGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGG 18427 ||||| | || ||||||||||||||| |||||| ||||||| |||||||| |||||||| Sbjct 47095 AGGGTCGATGCCCGAGTGGTTAATGGGGGCGGATTGTAAATTCGCTGGCTTTGCCTACGC 47036 Query 18428 GGGTTCAAATCCCTCCCTGCCCA 18450 ||||||||||| | | ||||| Sbjct 47035 TGGTTCAAATCCAGCTCGGCCCA 47013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596304956394160