Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq271 136 8e-27 seq280 104 5e-17 seq242 104 5e-17 seq176 104 5e-17 seq1 104 5e-17 seq286 98.7 2e-15 seq53 89.7 1e-12 seq3 89.7 1e-12 >seq271 Length=1385635 Score = 136 bits (150), Expect = 8e-27 Identities = 232/335 (69%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 317567 CCAACTTTGCCATGTTCCGGATGATGATACACGTCTTCCGACGTACGGGGGTGGTGCGAT 317626 ||| ||| |||||||| |||||||||| || | ||| || || | |||||||||||| | Sbjct 1109265 CCACCTTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGT 1109206 Query 317627 CGGCGAGACCGCGGACGAGTAGTGGGGTCAAGATAGACAGGGTCTTCGCATCGACCGACT 317686 | | ||||||||| || || || || || ||| |||||||| ||| || || |||| Sbjct 1109205 CAGTGAGACCGCGCACCAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACT 1109146 Query 317687 GGACGAATGTGGTCGCCGACAGGTTATGGACGCACTCGGGGACGTCCTGAGGAGACCCAA 317746 | ||||| |||||||||||||| || || ||||| ||||| || || || | || | Sbjct 1109145 GCACGAACGTGGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGA 1109086 Query 317747 TGCTCTTCACGAGATGGGGGATGAAGGGTTCGATGTCTTTGTTATCAAT----TTGACAA 317802 ||| | || ||||| | ||||| || ||||| ||| |||| || || Sbjct 1109085 TGCAGCGGATCAGGTGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCGGTG-CAG 1109027 Query 317803 CACGCGATAAGAGCCTTCGTGGCAGCGTCTTTTACCACTTGCTTCAAGTCGAGCATGCAA 317862 ||| | | || || | ||||| ||| || |||| | ||| | |||||| Sbjct 1109026 CACTTGGTGAGCGCTTCTGTGGCGGCGGTGCGCACGGTGGGCTTGAGGTCCACCATGCAG 1108967 Query 317863 TCTGTCACGACAGGGACGATTTCGGGGAGGTACAC 317897 | |||||||| || || || ||||| ||||| || Sbjct 1108966 TTGGTCACGACCGGCACAATCTCGGGCAGGTAGAC 1108932 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 317056 ATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTT 317115 || || | ||| || ||||||||||| | || ||||||||||| || || || || | Sbjct 1110785 ATGGCGCGCATGAGGGTCGACTTGCCGGAGCCGTTGGGGCCGCACAGGCCGTAGCGCTGG 1110726 Query 317116 CCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAG 317175 || |||||| | | || | ||||||||| || ||||| |||||||| ||||| ||| Sbjct 1110725 CCGCGCTTCAGGTGCAGGCGCGCGTTGTTCAGCAGGATCTTGCCACCATAGGCCAGGGAG 1110666 Query 317176 AACTC 317180 ||||| Sbjct 1110665 AACTC 1110661 >seq280 Length=4282644 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2001469 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2001528 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 2001529 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2001588 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 2001589 ATGCCCTCCTTGTCCTG 2001605 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2002024 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2002083 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 2002084 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2002143 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 2002144 ATGCCCTCCTTGTCCTG 2002160 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2002579 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2002638 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 2002639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2002698 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 2002699 ATGCCCTCCTTGTCCTG 2002715 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2003134 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2003193 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 2003194 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2003253 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 2003254 ATGCCCTCCTTGTCCTG 2003270 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2003694 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2003753 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||||||||| ||||| || || || || || ||||||| || || ||||| Sbjct 2003754 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 2003806 >seq242 Length=371688 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 197795 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 197854 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || |||||| || Sbjct 197855 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 197914 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 197915 ATGCCCTCCTTGTCCTG 197931 >seq176 Length=382588 Score = 104 bits (114), Expect = 5e-17 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 157185 CGCATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCC 157126 Query 168809 CGATTCGTCG 168818 |||| || || Sbjct 157125 CGATGCGGCG 157116 >seq1 Length=5958903 Score = 104 bits (114), Expect = 5e-17 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 5117283 CGCATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCC 5117342 Query 168809 CGATTCGTCG 168818 |||| || || Sbjct 5117343 CGATGCGGCG 5117352 >seq286 Length=1206827 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1113243 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 1113184 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| || Sbjct 1113183 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1113124 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 1113123 ATGCCCTCCTTGTCCTG 1113107 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1113748 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1113689 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| || Sbjct 1113688 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1113629 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 1113628 ATGCCCTCCTTGTCCTG 1113612 >seq53 Length=124359 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 80671 ACCTCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 80730 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||||||||| ||||| || || || || || ||||||| || || ||||| Sbjct 80731 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 80784 >seq3 Length=2670593 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 || ||||| ||||||||| |||||||||||| || || | ||| | ||||||||| Sbjct 2301924 TACCGCCACCAGATGTACTGCGCGGGCGTCATGTCCAGGTGCTGCTCCACGTGGTGGAAG 2301983 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC 316289 |||||||| |||||||| || || |||| || || |||||||| || Sbjct 2301984 GCGTGCTGCGCCACGTAGGCCAGCCGCAGGTTGGGGTGCTTCCACAC 2302030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735163184854