Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq5 122 2e-22
>seq5
Length=1518631
Score = 122 bits (134), Expect = 2e-22
Identities = 656/1027 (64%), Gaps = 50/1027 (5%)
Strand=Plus/Minus
Query 281762 CGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTT 281821
||||||||| ||||| |||||||| | | || ||||| || |||| || | |||
Sbjct 240087 CGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGGCCGGAGGGCACCAGCAGGTT 240028
Query 281822 AATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGA--- 281878
| ||| ||||||||||| |||| || || ||| |||||| || || ||||
Sbjct 240027 CACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACGATGGT----GGACGCGAGGC 239972
Query 281879 -TACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCT 281937
|||| |||||||| || ||| ||| || | || || || || ||| || || |
Sbjct 239971 TGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTAGCCCGAGAGCTGCGCAACTT 239912
Query 281938 TCACGTCTGATGTCAAGTTGCGTTTGAAAGCGC-AATATAATACTTTTCGTTGAGAAGGC 281996
| | ||| || | | || || ||| |||| | | | | || || | || || |||
Sbjct 239911 TGATGTCGGACTTGAGCTTACGCTTG-AAGCACGAGAAGAGCACCTTCCTCTGCGAGGGC 239853
Query 281997 TTGAAACCATCAACGACAGACGGAATGCTGCGTTC-CAGGTCATAC---CGCGAGAACAA 282052
||||| || || ||||| || || || || || || | || | || ||||| |
Sbjct 239852 TTGAACCCGTCGACGACGGAAGGGAT----CGATCGCATGAGATCCGCGCGGGAGAAGAG 239797
Query 282053 AATAAGTTCCTTGTCAATGAAGTCG-GGAACGGGA--ACCTCGGGCTTCTTGTGGTCAAG 282109
|| || ||||||| ||||| ||| | || || | ||| | || | ||| ||
Sbjct 239796 GATGAGCTCCTTGTTGATGAAATCGTCGTACCTGACGTCATCGCCCGTCAT---GTCCAG 239740
Query 282110 TTGGTTTCCCGGCTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCCCGAGTCTTGTT 282169
| ||||||||||||| || ||| |||| |||||||||||||| | || ||||| |
Sbjct 239739 GTACGTTCCCGGCTCGTAGGCGTTCAACCACGCCTTGCGATCCTCGACGCGCTTCTTGCT 239680
Query 282170 GAAAGAACGATCGATGAGCT---CTCCAGAATCAGAAGTCCACGTAAACGTCTTCATAAG 282226
||| | |||||||| | | | || | ||||||| || |||||| | |
Sbjct 239679 GAAGGCCATGTCGATGAGGTTACCGTCGCCGTCGGTGGTCCACGCGAAGGTCTTCTTGTG 239620
Query 282227 AGTCTTC-AGGTTGCTGAAGTAATGCTTGGCATCAGTGCTGGAACTCGTACCGAGACCCT 282285
|| || || | ||||| | |||||| || || || ||||||||||||||
Sbjct 239619 -GTGGTCGAGCGCGGCAAAGTACTCCTTGGCTTCCTTGGCGGTTGACGTACCGAGACCCT 239561
Query 282286 TGTAATACTTGATTT----------GATACTTAGAATAATCCT--TCGTGGTCTTCACCC 282333
|||| |||||||| | | || | |||| |||| |||| ||
Sbjct 239560 TGTAGTACTTGATGTTCCAGCCGCGGCCGGTTCCCGT-CTCCTCGGCGTGCTCTT--TCC 239504
Query 282334 AATCCTCGTAATCCGGAAGACTATA-AAATTCGCGAACGTCCTTTCCTTTCTTGGCGACC 282392
| | ||||| || ||||| | || ||| | | | | ||| || || | ||
Sbjct 239503 AGTTGTCGTACTCGGGAAGGGTGTAGAAAACCTTGCTC-TGCTTGCCCTTGGTCGCCTTG 239445
Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAG-ACTGGGAAAACA 282451
| ||| || |||||||||| | |||||| ||||| | || || |||||||
Sbjct 239444 ATGATCGGGGTGATGAACTCGACGAGGAAACCGGGAATCTTGAGCAGCGATGGGAAATGC 239385
Query 282452 GCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 282511
|| |||| |||||| || | ||||| ||||| | ||||| ||| |||||
Sbjct 239384 GC-GTGGAGAAAGTTAATCAGGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCGGT 239326
Query 282512 CATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCGGTTTG 282571
||||||||| | |||||||| | || | | | |||| | ||| |
Sbjct 239325 CATGATCATGATGTGACCGTAGCGGAGGCTCTTGGCGGACTCGTACGTGGTGCCGTGGCG 239266
Query 282572 AAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTGCCACAGA 282631
||||| | || || |||| | | || || |||| || |||| || | |
Sbjct 239265 GAGGCCGAGGATCTGCTTGATGTGGTTAATCTCGGCGTTGTTCATGAT-CTGATCGTGGC 239207
Query 282632 T-GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCGAC 282690
| || || |||||||| || | |||||||||||| || || || || |||| |||||||
Sbjct 239206 TCGCGTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGAAGACGCCGTATCGATCGCGAC 239147
Query 282691 CGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCAAGATGA 282750
|||| ||||| || || | | ||||||| || || || || || || | |||||
Sbjct 239146 CGACGACGGAGAGGCCGGACACCGCAAGTGCCTTCGCCGAGTCACCTTCGGTAAGGATGA 239087
Query 282751 GAGTACA 282757
| || ||
Sbjct 239086 GGGTGCA 239080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823742485970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |