Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq7 279 5e-70
seq8 163 3e-35
seq6 163 3e-35
seq15 145 8e-30
seq4 140 3e-28
seq10 116 4e-21
>seq7
Length=1394110
Score = 279 bits (308), Expect = 5e-70
Identities = 580/843 (69%), Gaps = 27/843 (3%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||| |||||| || ||| | ||||| | |||||||| || | | |
Sbjct 899839 GAGCCGATGCTGCAGGACAACGAGGACAGGTTCTGCCTCTTCCCCATCAAAGAGCACGCG 899898
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
||||| |||||||| |||| |||||||| ||||||| || |||||| | |||||
Sbjct 899899 GTGTGGAAGATGTACAAGCAGGCGGAGGCGTCATTCTGGAGCGCGGAGGAGATCGACCTC 899958
Query 116696 TCCAAGGAC-ACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753
|||| |||| || || ||||||| | |||| |||||||||||||| || |||||| ||
Sbjct 899959 TCCATGGACTACAAG-GACTGGGTGACGCT-GAACGACAACGAGCAGCACTTCATCTCGC 900016
Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813
|||| || || || ||||| || ||||| ||||| |||||| || | | || |
Sbjct 900017 ACGTCCTCGCGTTCTTCGCGGCGTCTGACGGGATCGTGCTCGAGAACCTAGGCCTCCGGT 900076
Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873
|| |||| || ||| || | ||||| ||| ||||||| |||||| ||||||| |
Sbjct 900077 TCATGAAGGACGTCCAGCTGCCGGAGGCTCGGGCGTTCTACGCGTTTCAGCTCGCCATCG 900136
Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGG 116930
||||| | |||||||| | ||| | ||||||||||| ||||| | | |
Sbjct 900137 AGAACATCCACTCGGAGACGTACGGGTTGCTCATCGACACCTACGTCAAGGACAGCGTGA 900196
Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990
|| ||| || || |||| | ||||| | | |||| || |||||
Sbjct 900197 AGAAGAGGCACC---TGTTCAGGGCCATTCACAACGTGCCCACGGTGGCGCGCAAGGCGC 900253
Query 116991 AGTGGGCGCTGCGCTGGATC--GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
||||||| || |||||| | | | ||| | |||| |||||| ||||||||
Sbjct 900254 AGTGGGCCCTCAAGTGGATCCAGTCCTCGGAGTG-----TTTCGCCGAGCGACTGGTGGC 900308
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTT-TTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
|||||| ||| |||||| ||||||| | ||| |||| | ||| || || |||||||
Sbjct 900309 GTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTTTG-CGCAATCTTCTGGCTCA 900367
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| ||||| ||||||| ||| || || ||| ||||||||||||||||||||||||||
Sbjct 900368 AGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGCTCATCTCCAGGGACGAGG 900427
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT-TTGGTGCAGCGAC-CGAGCGC 117225
| || || |||||||| ||||| | || | | ||| | ||| | | ||| | |
Sbjct 900428 GCCTCCACTGCGACTTCGCCTGCCTCCTCTAC-TCCATGCTCAAGCACCCTCTCGATC-C 900485
Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285
||||| | ||||||||||| || ||||| | ||||||| || || | |||
Sbjct 900486 CGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACATCGAGAAGGAGTTTGTGTGCGA 900545
Query 117286 AGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343
|| ||| | ||||| || |||| | || ||| | | ||||| | |||||||||
Sbjct 900546 TGCTCTGTC-GTGCGCGCTCGTGGGCATGAA-CGCGGATCTCATGTCCGAGTACATCGAG 900603
Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403
|| ||||| ||| | ||| || |||| | || | ||| | ||||| ||||||
Sbjct 900604 TTTGTCGCGGACCGCCTGATGACGCAGCTCGGCGTGGAGAAGGTGTGGAACACCCCCAAC 900663
Query 117404 CCG 117406
|||
Sbjct 900664 CCG 900666
>seq8
Length=1276107
Score = 163 bits (180), Expect = 3e-35
Identities = 168/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 456265 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 456207
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||
Sbjct 456206 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAA 456147
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| |||| || || || ||| | |||
Sbjct 456146 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 456110
Score = 159 bits (176), Expect = 4e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 455581 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455523
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 455522 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455463
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| |||| || || || ||| | |||
Sbjct 455462 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 455426
Score = 159 bits (176), Expect = 4e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 455809 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455751
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 455750 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455691
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| |||| || || || ||| | |||
Sbjct 455690 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 455654
Score = 159 bits (176), Expect = 4e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 456037 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455979
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 455978 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455919
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| |||| || || || ||| | |||
Sbjct 455918 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 455882
Score = 102 bits (112), Expect = 8e-17
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| | |||||||| || || |||| ||| ||||| ||||| || |||| |||
Sbjct 456451 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGC 456392
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| ||| ||||||||||||||||||||| |||| || || || ||| | |||
Sbjct 456391 ACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 456338
>seq6
Length=1431126
Score = 163 bits (180), Expect = 3e-35
Identities = 288/413 (70%), Gaps = 10/413 (2%)
Strand=Plus/Minus
Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082
|||| |||| |||||||||| | || |||||| | |||||||| ||||||| || |||
Sbjct 1273513 GCCGATTTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGC 1273454
Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142
||| | |||| | ||||| ||||| |||||||||||||||||||| || ||| |
Sbjct 1273453 TCCTTCTGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCC 1273394
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||| | | |||||||| || || |||||||||| || | || | | |
Sbjct 1273393 AACGAGCTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCG 1273334
Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCC 117262
| | || || | || | | ||||||| ||||||||| || || ||||
Sbjct 1273333 TACATCAACAAGAAGCCCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAG 1273274
Query 117263 ATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGA 117321
|||||| || || || ||| ||||| || |||| || | || | || |||
Sbjct 1273273 ATCGAGAAGGAGTTTGTCTGCGACGCGCT-CCCCTGCGCCCTCGTCGGCATGAA-CGCGG 1273216
Query 117322 AAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGC- 117379
| | ||||| | |||||||||||||||||||| | || |||| | | |||||
Sbjct 1273215 ATCTCATGTCCGAGTACATCGAGTTCGTCGCCGA---TCACCTCCTCGGCCAGCTCGGCA 1273159
Query 117380 --GCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430
| ||| | |||||| | ||||||| | |||| ||| | |||||||||
Sbjct 1273158 TGTCGAAGGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCC 1273106
Score = 113 bits (124), Expect = 5e-20
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| | |||||||| || ||||||| ||||||||| ||||| || |||| |||
Sbjct 1414277 GGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGC 1414336
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||| ||||||||||||||||||||| |||| || || || ||
Sbjct 1414337 ACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGT 1414383
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739
||||||||| ||||| ||| | |||| | ||||| | | ||| || |||||
Sbjct 1274238 CGAGGAGGTCGACCTCTCCGACGACATGGTGCACTGGAACAAGCTCAACAACGACGAGAA 1274179
Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799
|| |||||||||||| | || ||||| ||||||||| ||||||||||||| ||||||
Sbjct 1274178 GCACTTCATCAAGCACATCCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAA 1274119
Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840
|| | || || ||| ||||||||| | ||||||
Sbjct 1274118 CCTCGGCGTTCGCTTCATGGGCGAGGTGCAGTTCCCCGAGG 1274078
>seq15
Length=739136
Score = 145 bits (160), Expect = 8e-30
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| || || | |||||| | | | |||| |||||
Sbjct 297876 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACG-TCAAG 297818
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
| || || | ||||| |||||||||||| | |||||||| || || |||| |||||||
Sbjct 297817 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGC 297758
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| ||||| ||| ||||||||||||||||||||| |||| ||
Sbjct 297757 AAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 297698
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| || ||| | || | | ||||||
Sbjct 297697 CACCTCGTGCTCCGTCTCCGCGGCGGC 297671
>seq4
Length=1584431
Score = 140 bits (154), Expect = 3e-28
Identities = 146/189 (77%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| || || ||||||||| |||| || || | |||||| | | | |||| |||||
Sbjct 22568 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAG 22626
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
| || || | ||||| |||||||||||| | |||||||| || || |||| |||||||
Sbjct 22627 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGC 22686
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | ||||||||| ||||||||||||||||||||| |||| ||
Sbjct 22687 AAGCAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 22746
Query 40891 CATCTAGTG 40899
|| || |||
Sbjct 22747 CACCTCGTG 22755
>seq10
Length=1160640
Score = 116 bits (128), Expect = 4e-21
Identities = 118/150 (79%), Gaps = 3/150 (2%)
Strand=Plus/Plus
Query 139366 GCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCAC 139425
|||||| ||| ||||||||||||| | ||||||||||||||| | | |||||| ||||
Sbjct 191139 GCCGCG-GGCAAGCACGGCTTCCACATCCACGAGTTCGGCGACACCACCAACGGCTGCAT 191197
Query 139426 GTCGGCCGGCGAGCACTTCAACCC-CGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGA 139484
||| |||| ||||||||||| | || || |||||||||||| ||| || |||||
Sbjct 191198 GTCCACCGGACCCCACTTCAACCCGCACG-GCAAGGACCACGGCGCCCCCACCGACGAGA 191256
Query 139485 TCAGGCACGTCGGCGACCTGGGCAACCTCG 139514
| | |||| |||||||| |||||| |||
Sbjct 191257 ACCGCCACGCGGGCGACCTCGGCAACGTCG 191286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219077635440
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