Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 279 5e-70 seq8 163 3e-35 seq6 163 3e-35 seq15 145 8e-30 seq4 140 3e-28 seq10 116 4e-21 >seq7 Length=1394110 Score = 279 bits (308), Expect = 5e-70 Identities = 580/843 (69%), Gaps = 27/843 (3%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| |||||| || ||| | ||||| | |||||||| || | | | Sbjct 899839 GAGCCGATGCTGCAGGACAACGAGGACAGGTTCTGCCTCTTCCCCATCAAAGAGCACGCG 899898 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 ||||| |||||||| |||| |||||||| ||||||| || |||||| | ||||| Sbjct 899899 GTGTGGAAGATGTACAAGCAGGCGGAGGCGTCATTCTGGAGCGCGGAGGAGATCGACCTC 899958 Query 116696 TCCAAGGAC-ACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 |||| |||| || || ||||||| | |||| |||||||||||||| || |||||| || Sbjct 899959 TCCATGGACTACAAG-GACTGGGTGACGCT-GAACGACAACGAGCAGCACTTCATCTCGC 900016 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 |||| || || || ||||| || ||||| ||||| |||||| || | | || | Sbjct 900017 ACGTCCTCGCGTTCTTCGCGGCGTCTGACGGGATCGTGCTCGAGAACCTAGGCCTCCGGT 900076 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 || |||| || ||| || | ||||| ||| ||||||| |||||| ||||||| | Sbjct 900077 TCATGAAGGACGTCCAGCTGCCGGAGGCTCGGGCGTTCTACGCGTTTCAGCTCGCCATCG 900136 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGG 116930 ||||| | |||||||| | ||| | ||||||||||| ||||| | | | Sbjct 900137 AGAACATCCACTCGGAGACGTACGGGTTGCTCATCGACACCTACGTCAAGGACAGCGTGA 900196 Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 || ||| || || |||| | ||||| | | |||| || ||||| Sbjct 900197 AGAAGAGGCACC---TGTTCAGGGCCATTCACAACGTGCCCACGGTGGCGCGCAAGGCGC 900253 Query 116991 AGTGGGCGCTGCGCTGGATC--GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||||||| || |||||| | | | ||| | |||| |||||| |||||||| Sbjct 900254 AGTGGGCCCTCAAGTGGATCCAGTCCTCGGAGTG-----TTTCGCCGAGCGACTGGTGGC 900308 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTT-TTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||||| ||| |||||| ||||||| | ||| |||| | ||| || || ||||||| Sbjct 900309 GTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTTTG-CGCAATCTTCTGGCTCA 900367 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| ||||| ||||||| ||| || || ||| |||||||||||||||||||||||||| Sbjct 900368 AGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGCTCATCTCCAGGGACGAGG 900427 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT-TTGGTGCAGCGAC-CGAGCGC 117225 | || || |||||||| ||||| | || | | ||| | ||| | | ||| | | Sbjct 900428 GCCTCCACTGCGACTTCGCCTGCCTCCTCTAC-TCCATGCTCAAGCACCCTCTCGATC-C 900485 Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285 ||||| | ||||||||||| || ||||| | ||||||| || || | ||| Sbjct 900486 CGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACATCGAGAAGGAGTTTGTGTGCGA 900545 Query 117286 AGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343 || ||| | ||||| || |||| | || ||| | | ||||| | ||||||||| Sbjct 900546 TGCTCTGTC-GTGCGCGCTCGTGGGCATGAA-CGCGGATCTCATGTCCGAGTACATCGAG 900603 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 || ||||| ||| | ||| || |||| | || | ||| | ||||| |||||| Sbjct 900604 TTTGTCGCGGACCGCCTGATGACGCAGCTCGGCGTGGAGAAGGTGTGGAACACCCCCAAC 900663 Query 117404 CCG 117406 ||| Sbjct 900664 CCG 900666 >seq8 Length=1276107 Score = 163 bits (180), Expect = 3e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 456265 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 456207 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 456206 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAA 456147 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || || ||| | ||| Sbjct 456146 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 456110 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 455581 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455523 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 455522 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455463 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || || ||| | ||| Sbjct 455462 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 455426 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 455809 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455751 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 455750 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455691 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || || ||| | ||| Sbjct 455690 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 455654 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 456037 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455979 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 455978 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455919 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || || ||| | ||| Sbjct 455918 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 455882 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| ||||| || |||| ||| Sbjct 456451 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGC 456392 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || ||| ||||||||||||||||||||| |||| || || || ||| | ||| Sbjct 456391 ACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 456338 >seq6 Length=1431126 Score = 163 bits (180), Expect = 3e-35 Identities = 288/413 (70%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 |||| |||| |||||||||| | || |||||| | |||||||| ||||||| || ||| Sbjct 1273513 GCCGATTTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGC 1273454 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142 ||| | |||| | ||||| ||||| |||||||||||||||||||| || ||| | Sbjct 1273453 TCCTTCTGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCC 1273394 Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||| | | |||||||| || || |||||||||| || | || | | | Sbjct 1273393 AACGAGCTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCG 1273334 Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCC 117262 | | || || | || | | ||||||| ||||||||| || || |||| Sbjct 1273333 TACATCAACAAGAAGCCCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAG 1273274 Query 117263 ATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGA 117321 |||||| || || || ||| ||||| || |||| || | || | || ||| Sbjct 1273273 ATCGAGAAGGAGTTTGTCTGCGACGCGCT-CCCCTGCGCCCTCGTCGGCATGAA-CGCGG 1273216 Query 117322 AAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGC- 117379 | | ||||| | |||||||||||||||||||| | || |||| | | ||||| Sbjct 1273215 ATCTCATGTCCGAGTACATCGAGTTCGTCGCCGA---TCACCTCCTCGGCCAGCTCGGCA 1273159 Query 117380 --GCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 | ||| | |||||| | ||||||| | |||| ||| | ||||||||| Sbjct 1273158 TGTCGAAGGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCC 1273106 Score = 113 bits (124), Expect = 5e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| ||||||||| ||||| || |||| ||| Sbjct 1414277 GGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGC 1414336 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||||||||||||||||||| |||| || || || || Sbjct 1414337 ACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGT 1414383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739 ||||||||| ||||| ||| | |||| | ||||| | | ||| || ||||| Sbjct 1274238 CGAGGAGGTCGACCTCTCCGACGACATGGTGCACTGGAACAAGCTCAACAACGACGAGAA 1274179 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 || |||||||||||| | || ||||| ||||||||| ||||||||||||| |||||| Sbjct 1274178 GCACTTCATCAAGCACATCCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAA 1274119 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 || | || || ||| ||||||||| | |||||| Sbjct 1274118 CCTCGGCGTTCGCTTCATGGGCGAGGTGCAGTTCCCCGAGG 1274078 >seq15 Length=739136 Score = 145 bits (160), Expect = 8e-30 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| || || | |||||| | | | |||| ||||| Sbjct 297876 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACG-TCAAG 297818 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| |||||||||||| | |||||||| || || |||| ||||||| Sbjct 297817 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGC 297758 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| ||||| ||| ||||||||||||||||||||| |||| || Sbjct 297757 AAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 297698 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || ||| | || | | |||||| Sbjct 297697 CACCTCGTGCTCCGTCTCCGCGGCGGC 297671 >seq4 Length=1584431 Score = 140 bits (154), Expect = 3e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| |||| || || | |||||| | | | |||| ||||| Sbjct 22568 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAG 22626 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| |||||||||||| | |||||||| || || |||| ||||||| Sbjct 22627 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGC 22686 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||||||| ||||||||||||||||||||| |||| || Sbjct 22687 AAGCAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 22746 Query 40891 CATCTAGTG 40899 || || ||| Sbjct 22747 CACCTCGTG 22755 >seq10 Length=1160640 Score = 116 bits (128), Expect = 4e-21 Identities = 118/150 (79%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 139366 GCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCAC 139425 |||||| ||| ||||||||||||| | ||||||||||||||| | | |||||| |||| Sbjct 191139 GCCGCG-GGCAAGCACGGCTTCCACATCCACGAGTTCGGCGACACCACCAACGGCTGCAT 191197 Query 139426 GTCGGCCGGCGAGCACTTCAACCC-CGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGA 139484 ||| |||| ||||||||||| | || || |||||||||||| ||| || ||||| Sbjct 191198 GTCCACCGGACCCCACTTCAACCCGCACG-GCAAGGACCACGGCGCCCCCACCGACGAGA 191256 Query 139485 TCAGGCACGTCGGCGACCTGGGCAACCTCG 139514 | | |||| |||||||| |||||| ||| Sbjct 191257 ACCGCCACGCGGGCGACCTCGGCAACGTCG 191286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440