Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq8 120 3e-22
seq15 104 3e-17
seq4 91.5 2e-13
>seq8
Length=1276107
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || ||||| || |||| || |||||||| ||||||||
Sbjct 456134 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 456193
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 456194 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 456252
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || || ||||| |
Sbjct 456253 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 456312
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 456313 CGAAGATCTGCAT 456325
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || ||||| || | || || |||||||| ||||||||
Sbjct 455450 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455509
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 455510 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 455568
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || || ||||| |
Sbjct 455569 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 455628
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 455629 CGAAGATCTGCAT 455641
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || ||||| || | || || |||||||| ||||||||
Sbjct 455678 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455737
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 455738 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 455796
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || || ||||| |
Sbjct 455797 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 455856
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 455857 CGAAGATCTGCAT 455869
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || ||||| || | || || |||||||| ||||||||
Sbjct 455906 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455965
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 455966 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 456024
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || || ||||| |
Sbjct 456025 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 456084
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 456085 CGAAGATCTGCAT 456097
>seq15
Length=739136
Score = 104 bits (114), Expect = 3e-17
Identities = 126/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || ||||| || |||| || |||||||| || |||||
Sbjct 297707 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 297766
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 297767 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 297825
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | | |||||| ||| ||||| |||| |||||||| ||||| ||
Sbjct 297826 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 297874
>seq4
Length=1584431
Score = 91.5 bits (100), Expect = 2e-13
Identities = 123/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || | || || |||||||| || |||||
Sbjct 22737 CTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 22678
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 22677 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22619
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | | |||||| || ||||| |||| |||||||| || || ||
Sbjct 22618 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 22570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817464193320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |