Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 237 3e-57
seq14 145 2e-29
seq7 107 4e-18
seq6 105 1e-17
>seq1
Length=2053059
Score = 237 bits (262), Expect = 3e-57
Identities = 616/930 (66%), Gaps = 23/930 (2%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || || ||||||| ||| | | ||| || |||||| |||||| |||||| |
Sbjct 2014214 GACTTTGACTACGATTACTTCGGCTACAAGACTCTGGAGCGATCGTACCTCCTCCGCGTC 2014273
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
|| |||||||||||||| || |||||| || | ||||| || || |||| || |||
Sbjct 2014274 GACGGCAAGATCGTGGAGCGCCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCAC 2014333
Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988
||||||| | |||| | |||| || ||| | | || |||||||||||
Sbjct 2014334 AAGGATG---TGGAGAAGGCCATCGACACCTACCACATGCTCTCCGAGCGCTGGATGACC 2014390
Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048
|| || | || |||||||||||| | |||||| | | |||||| ||||| ||
Sbjct 2014391 CACGCGTCCCCCACGCTCTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTC 2014450
Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108
|| | |||||| | || || || |||| ||||| || || || || || || |||
Sbjct 2014451 CTCATCGCCATGAAGGAGGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCG 2014510
Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168
|| || || | ||| ||||| |||||||| ||| || | ||||||| || | |
Sbjct 2014511 TGCATCTCCAAGTCCGCCGGCGGCATCGGTCTGTCCATCCACGACATCCGCGCCACCTCT 2014570
Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT 249228
|| |||||| || || || || | | || ||| | ||| | ||||| ||||
Sbjct 2014571 TCCTACATCCGCGGCACCAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTT 2014630
Query 249229 GAGTCCACCGCCAGGTTCATCAACCAGGCCG--GGC--GCCGAAAGGGGTCGTTCGCCAT 249284
| |||||| |||| | || |||||| || ||| | |||||| | | ||||||||
Sbjct 2014631 AACGACACCGCGAGGTACGTCGACCAGGGCGGCGGCAAGAGGAAAGGCG-CATTCGCCAT 2014689
Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344
|| | || ||||||||| || || || || | || ||| | |||||| ||||
Sbjct 2014690 CTACCTCGAGCCGTGGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGG 2014749
Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404
||| ||| | | || | ||||| ||||||||||||||| | ||| |||||||
Sbjct 2014750 CAAGGAGGAGGCGCGTGCCAGGGACCTGTTCTACGGCCTGTGGACCAACGATCTGTTCAT 2014809
Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464
| |||||| |||| ||||||| ||||| || | | || ||| ||||||| ||
Sbjct 2014810 GAAGCGCGTCGAGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCT 2014869
Query 249465 CATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAA--TACGAATCCAACGG 249521
| ||| |||| || |||| | || || || |||| ||||| | | ||
Sbjct 2014870 CGCGGATTGCTGGGGCGAGGAGTTCG---AGGCTCTGTACGAAAAGTACGAGGCGGAGGG 2014926
Query 249522 CATCGG---CAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCA 249575
|| || ||||| ||||||| | | || || || | | | ||||||||
Sbjct 2014927 CAAGGGTAAGAAGACGGTCAAGGCCCAGCAGCTCTGGTTCGCCA---TCCTCGAGTCCCA 2014983
Query 249576 GATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCA 249635
| | ||||| || ||||| | ||||| || ||||||||| |||| |||||
Sbjct 2014984 GGTTGAGACTGGTAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCA 2015043
Query 249636 ACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTC 249695
| | | || || |||||||| || || || ||||| | ||| | | | ||| | ||
Sbjct 2015044 GCAGAACCTCGGCACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTC 2015103
Query 249696 CAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725
|||||||| || || |||||||| ||
Sbjct 2015104 GCCGGAGGAGACCGCGGTGTGCAACCTCGC 2015133
>seq14
Length=832468
Score = 145 bits (160), Expect = 2e-29
Identities = 213/298 (71%), Gaps = 10/298 (3%)
Strand=Plus/Minus
Query 254099 GCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGAT 254158
||||||||||||||| ||||| || ||||| ||||| | ||| || ||| |||||||
Sbjct 650031 GCGCGTGCTCGAGCTCAACGCCTCCGACGAGCGCGGCATCAGCGTGGTGCGCAACAAGAT 649972
Query 254159 CAAGACTTTC---TCCAAGAT-GTCGATTTCGTCGTTCCA----ACCCGGCTGTCCGCCT 254210
|||| ||| |||| | |||| | || || |||| | |||||
Sbjct 649971 CAAGGGGTTCGCGTCCACGGCCGTCGGACAGGGCGCCCCGGGGTACCCATCA--CCGCCC 649914
Query 254211 TTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTC 254270
| |||| || | ||||| |||||||| ||| ||||||| ||||||||| ||||| |||
Sbjct 649913 TACAAGATCCTCATCCTCGACGAGGCTGACTCCATGACAAACGACGCGCAATCCGCGCTC 649854
Query 254271 CGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG 254330
|| |||||||||||||| ||||| |||||| | || | | | ||||||||||| |
Sbjct 649853 CGTCGAACGATGGAGACCTACTCCAAGGTGACGAGGTTCTTCATCCTGTGCAACTACATC 649794
Query 254331 TCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388
||| |||||||| || | || |||||||||||||| | |||| ||||||
Sbjct 649793 TCGCGGATCATCGAACCCATCGCGAGCCGGTGCGCCAAGTTCAGGTTCAAGCCCCTCG 649736
>seq7
Length=1394110
Score = 107 bits (118), Expect = 4e-18
Identities = 130/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318
|||| | |||| | | ||| || ||||| | ||| |||||||| || ||||| ||||||
Sbjct 900734 TACTGGTCCACCCGGTGCTCGAAGAAGTTCGCCTTGCCCTGGAGCGATATCATCTCCATC 900675
Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378
|||||||| ||||||| | ||| ||||||| || || ||||| ||| | | |
Sbjct 900674 CACTCGAACGGGTTGGGGGTGTTCCACACCTTCTCCACGCCGAGCTGCGTCATCAGGCGG 900615
Query 157379 TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435
||||| ||||||| ||||||||| | |||| | | || | || || | |||||||
Sbjct 900614 TCCGCGACAAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGCGCG 900558
>seq6
Length=1431126
Score = 105 bits (116), Expect = 1e-17
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317
||||||| |||| | ||||| || ||||||||||| |||||||| || || | |||||
Sbjct 1273061 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCAT 1273120
Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAGCTGGTTCAGCCAGT 157376
||| ||||| |||||||| ||||||| |||| | | | || |||||| || ||
Sbjct 1273121 CCAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACAT-GCCGAGCTGGCCGAGGAGGT 1273179
Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436
|| || || |||| ||||||||| | |||| | | || | || |||| ||| |||
Sbjct 1273180 GATCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGC 1273239
Query 157437 CGGGAAGCGC 157446
||| |||||
Sbjct 1273240 AGGGGAGCGC 1273249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766138604992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |