Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 237 3e-57 seq14 145 2e-29 seq7 107 4e-18 seq6 105 1e-17 >seq1 Length=2053059 Score = 237 bits (262), Expect = 3e-57 Identities = 616/930 (66%), Gaps = 23/930 (2%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || ||||||| ||| | | ||| || |||||| |||||| |||||| | Sbjct 2014214 GACTTTGACTACGATTACTTCGGCTACAAGACTCTGGAGCGATCGTACCTCCTCCGCGTC 2014273 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 || |||||||||||||| || |||||| || | ||||| || || |||| || ||| Sbjct 2014274 GACGGCAAGATCGTGGAGCGCCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCAC 2014333 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||||||| | |||| | |||| || ||| | | || ||||||||||| Sbjct 2014334 AAGGATG---TGGAGAAGGCCATCGACACCTACCACATGCTCTCCGAGCGCTGGATGACC 2014390 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || | || |||||||||||| | |||||| | | |||||| ||||| || Sbjct 2014391 CACGCGTCCCCCACGCTCTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTC 2014450 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || | |||||| | || || || |||| ||||| || || || || || || ||| Sbjct 2014451 CTCATCGCCATGAAGGAGGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCG 2014510 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || | ||| ||||| |||||||| ||| || | ||||||| || | | Sbjct 2014511 TGCATCTCCAAGTCCGCCGGCGGCATCGGTCTGTCCATCCACGACATCCGCGCCACCTCT 2014570 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT 249228 || |||||| || || || || | | || ||| | ||| | ||||| |||| Sbjct 2014571 TCCTACATCCGCGGCACCAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTT 2014630 Query 249229 GAGTCCACCGCCAGGTTCATCAACCAGGCCG--GGC--GCCGAAAGGGGTCGTTCGCCAT 249284 | |||||| |||| | || |||||| || ||| | |||||| | | |||||||| Sbjct 2014631 AACGACACCGCGAGGTACGTCGACCAGGGCGGCGGCAAGAGGAAAGGCG-CATTCGCCAT 2014689 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 || | || ||||||||| || || || || | || ||| | |||||| |||| Sbjct 2014690 CTACCTCGAGCCGTGGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGG 2014749 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||| ||| | | || | ||||| ||||||||||||||| | ||| ||||||| Sbjct 2014750 CAAGGAGGAGGCGCGTGCCAGGGACCTGTTCTACGGCCTGTGGACCAACGATCTGTTCAT 2014809 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | |||||| |||| ||||||| ||||| || | | || ||| ||||||| || Sbjct 2014810 GAAGCGCGTCGAGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCT 2014869 Query 249465 CATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAA--TACGAATCCAACGG 249521 | ||| |||| || |||| | || || || |||| ||||| | | || Sbjct 2014870 CGCGGATTGCTGGGGCGAGGAGTTCG---AGGCTCTGTACGAAAAGTACGAGGCGGAGGG 2014926 Query 249522 CATCGG---CAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCA 249575 || || ||||| ||||||| | | || || || | | | |||||||| Sbjct 2014927 CAAGGGTAAGAAGACGGTCAAGGCCCAGCAGCTCTGGTTCGCCA---TCCTCGAGTCCCA 2014983 Query 249576 GATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCA 249635 | | ||||| || ||||| | ||||| || ||||||||| |||| ||||| Sbjct 2014984 GGTTGAGACTGGTAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCA 2015043 Query 249636 ACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTC 249695 | | | || || |||||||| || || || ||||| | ||| | | | ||| | || Sbjct 2015044 GCAGAACCTCGGCACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTC 2015103 Query 249696 CAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||||||| || || |||||||| || Sbjct 2015104 GCCGGAGGAGACCGCGGTGTGCAACCTCGC 2015133 >seq14 Length=832468 Score = 145 bits (160), Expect = 2e-29 Identities = 213/298 (71%), Gaps = 10/298 (3%) Strand=Plus/Minus Query 254099 GCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGAT 254158 ||||||||||||||| ||||| || ||||| ||||| | ||| || ||| ||||||| Sbjct 650031 GCGCGTGCTCGAGCTCAACGCCTCCGACGAGCGCGGCATCAGCGTGGTGCGCAACAAGAT 649972 Query 254159 CAAGACTTTC---TCCAAGAT-GTCGATTTCGTCGTTCCA----ACCCGGCTGTCCGCCT 254210 |||| ||| |||| | |||| | || || |||| | ||||| Sbjct 649971 CAAGGGGTTCGCGTCCACGGCCGTCGGACAGGGCGCCCCGGGGTACCCATCA--CCGCCC 649914 Query 254211 TTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTC 254270 | |||| || | ||||| |||||||| ||| ||||||| ||||||||| ||||| ||| Sbjct 649913 TACAAGATCCTCATCCTCGACGAGGCTGACTCCATGACAAACGACGCGCAATCCGCGCTC 649854 Query 254271 CGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG 254330 || |||||||||||||| ||||| |||||| | || | | | ||||||||||| | Sbjct 649853 CGTCGAACGATGGAGACCTACTCCAAGGTGACGAGGTTCTTCATCCTGTGCAACTACATC 649794 Query 254331 TCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 ||| |||||||| || | || |||||||||||||| | |||| |||||| Sbjct 649793 TCGCGGATCATCGAACCCATCGCGAGCCGGTGCGCCAAGTTCAGGTTCAAGCCCCTCG 649736 >seq7 Length=1394110 Score = 107 bits (118), Expect = 4e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||| | |||| | | ||| || ||||| | ||| |||||||| || ||||| |||||| Sbjct 900734 TACTGGTCCACCCGGTGCTCGAAGAAGTTCGCCTTGCCCTGGAGCGATATCATCTCCATC 900675 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378 |||||||| ||||||| | ||| ||||||| || || ||||| ||| | | | Sbjct 900674 CACTCGAACGGGTTGGGGGTGTTCCACACCTTCTCCACGCCGAGCTGCGTCATCAGGCGG 900615 Query 157379 TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 ||||| ||||||| ||||||||| | |||| | | || | || || | ||||||| Sbjct 900614 TCCGCGACAAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGCGCG 900558 >seq6 Length=1431126 Score = 105 bits (116), Expect = 1e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||||||||| |||||||| || || | ||||| Sbjct 1273061 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCAT 1273120 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAGCTGGTTCAGCCAGT 157376 ||| ||||| |||||||| ||||||| |||| | | | || |||||| || || Sbjct 1273121 CCAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACAT-GCCGAGCTGGCCGAGGAGGT 1273179 Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 || || || |||| ||||||||| | |||| | | || | || |||| ||| ||| Sbjct 1273180 GATCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGC 1273239 Query 157437 CGGGAAGCGC 157446 ||| ||||| Sbjct 1273240 AGGGGAGCGC 1273249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766138604992