Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 251 6e-62 seq6 156 4e-33 seq8 102 7e-17 >seq1 Length=2053059 Score = 251 bits (278), Expect = 6e-62 Identities = 638/966 (66%), Gaps = 7/966 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || || ||||| || || ||| || || |||||||| ||||| ||| Sbjct 2015142 GCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCG 2015083 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||| | || ||||| | || ||||||| || || |||||| Sbjct 2015082 GTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCAC 2015023 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||| ||||||||||||| | || ||||| ||||| ||||||| ||| || | Sbjct 2015022 GCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAAC 2014963 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCTTCCTCGTACTTTTGGT 23258 || | ||| || | || |||| | |||| |||| || |||||||||||| || Sbjct 2014962 CAGAGCTGCTGGGCCTTGAC-CGTCTT-CTTACCCTTGCCCTCCGCCTCGTACTTTTCGT 2014905 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 ||| || || || || | || | || || || || || || | || | || || | Sbjct 2014904 ACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTGGGGCAGA 2014845 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 ||| ||||| || | || ||||| |||| || ||||| |||| || Sbjct 2014844 AGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGC 2014785 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 |||||||||| || | ||| ||| ||||||| |||||| |||||| | || | Sbjct 2014784 CGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCC 2014725 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| || | |||||| ||||||||||||||||| | ||| || ||||| ||||| Sbjct 2014724 AGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGC 2014665 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||||||||| |||||||| | || |||| ||| | || | ||||| || | || | Sbjct 2014664 CGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGC 2014605 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 ||||||| | ||| ||| | ||| | || || | || ||| | | Sbjct 2014604 CGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGG 2014545 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | ||| ||||| ||| | || || || || |||||| | || || || ||||||| Sbjct 2014544 ACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGA 2014485 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 ||||||||||| ||||| || | |||| | ||||||||| |||| || | || Sbjct 2014484 TGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGG 2014425 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | ||| | | ||| || || ||| ||||| || | | | | || | | | Sbjct 2014424 GGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAGAGCATGT 2014365 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 ||| ||||||||||| || | |||| ||| || ||||||||||||||||| | Sbjct 2014364 GGTAGGTGTCGATGGCCTTCTCCACATCCT---TGTGGATGCCGATGGCGACGCGCATGA 2014308 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 || || || || | ||| || | ||||| | || || || || || | || Sbjct 2014307 GCAGGTGCTGGGGGCGCTCCACGATCTTGCCGTCGACGCGGAGGAGGTACGATCGCTCCA 2014248 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || || | || || || || |||| |||||| || |||| ||| || | |||| | Sbjct 2014247 GAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCGGTCGTACACGATCTCGGAATCGA 2014188 Query 23979 AACGGT 23984 |||||| Sbjct 2014187 AACGGT 2014182 Score = 158 bits (174), Expect = 1e-33 Identities = 310/452 (69%), Gaps = 11/452 (2%) Strand=Plus/Minus Query 22151 AGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAAT 22210 || || |||||||| || || || ||| |||||||||||||||| || | |||||||| Sbjct 2016081 AGGTAGTACATGCCGGTTTTAAGGCCCTTCTTCCACGCGTAAAAGTGCAGCGACGTCAGC 2016022 Query 22211 TTTCCATAACTCGGCAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAAC 22267 || || | ||| ||| ||||| ||| ||||||||||| ||| ||||| || Sbjct 2016021 TTACCGCTGTT-GGC--GTCGGACATGTGCACGTTGAACGACTGCGACTGGTCGATGAAG 2015965 Query 22268 GCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTG 22327 || || || ||||||||||| | | | | ||| | || ||||| || |||||| Sbjct 2015964 GCGCCGCGGTCGGCGGCCATGTCCACGAGGATGCGCTGCTTGATCTCCCAGACCGTCTTG 2015905 Query 22328 TACAGTTGCCTGATCTCTAACGGTATCGAT-TCGATCCTCTGGACGGACCCGTTATTGTG 22386 || | | | ||| | | ||| ||| || | | ||||||||| ||||| ||| Sbjct 2015904 TAGATCTCCTTGAGGT-TGTCGGG---GATGTCCAGCGACTGGACGGAGCCGTTGTTGGC 2015849 Query 22387 TATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG 22446 |||| | || || | | || ||| | || || |||| | || || || Sbjct 2015848 GATGAGCTCGTTCTTGAGGCTGGGGTCCCAGAGGCCCATCTCGGTGAGGTCGGAGAGGAG 2015789 Query 22447 ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGT 22506 || ||||||| || ||||||||||| | |||||||| ||| |||||||| || Sbjct 2015788 GTGCTGGTTCACGACGGTGAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGT 2015729 Query 22507 GAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGG 22566 | |||| ||||| | || ||||| |||| ||||| | || || ||||| ||||| || Sbjct 2015728 GTACGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGG 2015669 Query 22567 CGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT 22598 ||||| ||| || ||||| | | |||||||| Sbjct 2015668 CGCCACCAGCAGGGAGTTGCGGACGCCGTGCT 2015637 >seq6 Length=1431126 Score = 156 bits (172), Expect = 4e-33 Identities = 322/470 (69%), Gaps = 8/470 (2%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 ||||||||| | || ||||||||||| | |||| || || ||||| || ||| ||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || | | ||| ||||||| |||||||| ||||||||||| || || |||||| Sbjct 1273447 TGCTCCA-TCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 1273389 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || ||||||||||| || || || ||||||||||| | ||||| |||| Sbjct 1273388 GCTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCGTACAT 1273329 Query 58142 TGTCAATAAACCGACGCGGGATCG-CATCTTGGACATTATCACCGAGGCGGTCGCGATCG 58200 ||| || || | || | || | || | | || ||| ||||| |||| ||||| Sbjct 1273328 CAACAAGAAGCCCA-ACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGATCG 1273270 Query 58201 AAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGA 58260 | || ||||||||| ||| || || || ||| | |||| |||||| ||| | | Sbjct 1273269 AGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCTCA 1273210 Query 58261 TGTCAAAGTACATTGAGTTTGTTGCCGA-CA-GACTTTTGCTCGAACTGATTGGAGAGCG 58318 |||| ||||||| ||||| || ||||| || | | || | | | || || | Sbjct 1273209 TGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGAAGG 1273150 Query 58319 TCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGAC 58378 | |||||| | || || || || | ||| | || ||||| ||| |||| ||||| Sbjct 1273149 --AGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGAC 1273092 Query 58379 AAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 ||||| ||||| || || |||| || || || ||||||||||| Sbjct 1273091 CAACTTCTTCGAGAAGCGCGTGGGCGAGTACCAGAAGAGCGGCGTGATGA 1273042 >seq8 Length=1276107 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || | ||| Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 456265 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 456206 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || ||||||||||| ||| | || ||| Sbjct 456205 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGAC 456170 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || | ||| Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 455581 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455522 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| | || || Sbjct 455521 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 455487 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || | ||| Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 455809 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455750 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| | || || Sbjct 455749 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 455715 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || | ||| Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 456037 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455978 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| | || || Sbjct 455977 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 455943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766294130480