Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 251 6e-62
seq6 156 4e-33
seq8 102 7e-17
>seq1
Length=2053059
Score = 251 bits (278), Expect = 6e-62
Identities = 638/966 (66%), Gaps = 7/966 (1%)
Strand=Plus/Minus
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
||||| || || || ||||| || || ||| || || |||||||| ||||| |||
Sbjct 2015142 GCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCG 2015083
Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140
|| || || ||| | || ||||| | || ||||||| || || ||||||
Sbjct 2015082 GTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCAC 2015023
Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200
| ||||||| ||||||||||||| | || ||||| ||||| ||||||| ||| || |
Sbjct 2015022 GCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAAC 2014963
Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCTTCCTCGTACTTTTGGT 23258
|| | ||| || | || |||| | |||| |||| || |||||||||||| ||
Sbjct 2014962 CAGAGCTGCTGGGCCTTGAC-CGTCTT-CTTACCCTTGCCCTCCGCCTCGTACTTTTCGT 2014905
Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318
||| || || || || | || | || || || || || || | || | || || |
Sbjct 2014904 ACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTGGGGCAGA 2014845
Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378
||| ||||| || | || ||||| |||| || ||||| |||| ||
Sbjct 2014844 AGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGC 2014785
Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438
|||||||||| || | ||| ||| ||||||| |||||| |||||| | || |
Sbjct 2014784 CGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCC 2014725
Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498
|||| || | |||||| ||||||||||||||||| | ||| || ||||| |||||
Sbjct 2014724 AGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGC 2014665
Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558
||||||||| |||||||| | || |||| ||| | || | ||||| || | || |
Sbjct 2014664 CGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGC 2014605
Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618
||||||| | ||| ||| | ||| | || || | || ||| | |
Sbjct 2014604 CGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGG 2014545
Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678
| ||| ||||| ||| | || || || || |||||| | || || || |||||||
Sbjct 2014544 ACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGA 2014485
Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738
||||||||||| ||||| || | |||| | ||||||||| |||| || | ||
Sbjct 2014484 TGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGG 2014425
Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798
| ||| | | ||| || || ||| ||||| || | | | | || | | |
Sbjct 2014424 GGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAGAGCATGT 2014365
Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858
||| ||||||||||| || | |||| ||| || ||||||||||||||||| |
Sbjct 2014364 GGTAGGTGTCGATGGCCTTCTCCACATCCT---TGTGGATGCCGATGGCGACGCGCATGA 2014308
Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
|| || || || | ||| || | ||||| | || || || || || | ||
Sbjct 2014307 GCAGGTGCTGGGGGCGCTCCACGATCTTGCCGTCGACGCGGAGGAGGTACGATCGCTCCA 2014248
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978
|| || | || || || || |||| |||||| || |||| ||| || | |||| |
Sbjct 2014247 GAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCGGTCGTACACGATCTCGGAATCGA 2014188
Query 23979 AACGGT 23984
||||||
Sbjct 2014187 AACGGT 2014182
Score = 158 bits (174), Expect = 1e-33
Identities = 310/452 (69%), Gaps = 11/452 (2%)
Strand=Plus/Minus
Query 22151 AGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAAT 22210
|| || |||||||| || || || ||| |||||||||||||||| || | ||||||||
Sbjct 2016081 AGGTAGTACATGCCGGTTTTAAGGCCCTTCTTCCACGCGTAAAAGTGCAGCGACGTCAGC 2016022
Query 22211 TTTCCATAACTCGGCAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAAC 22267
|| || | ||| ||| ||||| ||| ||||||||||| ||| ||||| ||
Sbjct 2016021 TTACCGCTGTT-GGC--GTCGGACATGTGCACGTTGAACGACTGCGACTGGTCGATGAAG 2015965
Query 22268 GCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTG 22327
|| || || ||||||||||| | | | | ||| | || ||||| || ||||||
Sbjct 2015964 GCGCCGCGGTCGGCGGCCATGTCCACGAGGATGCGCTGCTTGATCTCCCAGACCGTCTTG 2015905
Query 22328 TACAGTTGCCTGATCTCTAACGGTATCGAT-TCGATCCTCTGGACGGACCCGTTATTGTG 22386
|| | | | ||| | | ||| ||| || | | ||||||||| ||||| |||
Sbjct 2015904 TAGATCTCCTTGAGGT-TGTCGGG---GATGTCCAGCGACTGGACGGAGCCGTTGTTGGC 2015849
Query 22387 TATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG 22446
|||| | || || | | || ||| | || || |||| | || || ||
Sbjct 2015848 GATGAGCTCGTTCTTGAGGCTGGGGTCCCAGAGGCCCATCTCGGTGAGGTCGGAGAGGAG 2015789
Query 22447 ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGT 22506
|| ||||||| || ||||||||||| | |||||||| ||| |||||||| ||
Sbjct 2015788 GTGCTGGTTCACGACGGTGAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGT 2015729
Query 22507 GAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGG 22566
| |||| ||||| | || ||||| |||| ||||| | || || ||||| ||||| ||
Sbjct 2015728 GTACGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGG 2015669
Query 22567 CGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT 22598
||||| ||| || ||||| | | ||||||||
Sbjct 2015668 CGCCACCAGCAGGGAGTTGCGGACGCCGTGCT 2015637
>seq6
Length=1431126
Score = 156 bits (172), Expect = 4e-33
Identities = 322/470 (69%), Gaps = 8/470 (2%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021
||||||||| | || ||||||||||| | |||| || || ||||| || ||| |||
Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448
Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081
||| || | | ||| ||||||| |||||||| ||||||||||| || || ||||||
Sbjct 1273447 TGCTCCA-TCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 1273389
Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141
| | || ||||||||||| || || || ||||||||||| | ||||| ||||
Sbjct 1273388 GCTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCGTACAT 1273329
Query 58142 TGTCAATAAACCGACGCGGGATCG-CATCTTGGACATTATCACCGAGGCGGTCGCGATCG 58200
||| || || | || | || | || | | || ||| ||||| |||| |||||
Sbjct 1273328 CAACAAGAAGCCCA-ACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGATCG 1273270
Query 58201 AAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGA 58260
| || ||||||||| ||| || || || ||| | |||| |||||| ||| | |
Sbjct 1273269 AGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCTCA 1273210
Query 58261 TGTCAAAGTACATTGAGTTTGTTGCCGA-CA-GACTTTTGCTCGAACTGATTGGAGAGCG 58318
|||| ||||||| ||||| || ||||| || | | || | | | || || |
Sbjct 1273209 TGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGAAGG 1273150
Query 58319 TCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGAC 58378
| |||||| | || || || || | ||| | || ||||| ||| |||| |||||
Sbjct 1273149 --AGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGAC 1273092
Query 58379 AAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428
||||| ||||| || || |||| || || || |||||||||||
Sbjct 1273091 CAACTTCTTCGAGAAGCGCGTGGGCGAGTACCAGAAGAGCGGCGTGATGA 1273042
>seq8
Length=1276107
Score = 102 bits (112), Expect = 7e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| |||| || || | |||
Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 456265 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 456206
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
||||| || || ||||||||||| ||| | || |||
Sbjct 456205 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGAC 456170
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| |||| || || | |||
Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 455581 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455522
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| || || ||||||||||| ||| | || ||
Sbjct 455521 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 455487
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| |||| || || | |||
Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 455809 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455750
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| || || ||||||||||| ||| | || ||
Sbjct 455749 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 455715
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| |||| || || | |||
Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 456037 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 455978
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| || || ||||||||||| ||| | || ||
Sbjct 455977 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 455943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766294130480
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