Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 5e-13 seq8 82.4 8e-11 >seq7 Length=1394110 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52892 TGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGA 52951 |||||||||||||| | |||| |||||||||||||||||| |||||| | ||| ||| Sbjct 900566 TGGGCATGAACGCGGATCTCATGTCCGAGTACATCGAGTTTGTCGCGGACCGCCTGATGA 900625 Query 52952 TGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACA 53011 ||||||||| | ||| | || | | ||||| || || ||| | | | Sbjct 900626 CGCAGCTCGGCGTGGAGAAGGTGTGGAACACCCCCAACCCGTTCGAGTGGATGGAGATGA 900685 Query 53012 TATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 |||||||| ||||||| | ||||| |||||| || |||| | |||| Sbjct 900686 TATCGCTCCAGGGCAAGGCGAACTTCTTCGAGCACCGGGTGGACCAGTA 900734 >seq8 Length=1276107 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| ||| |||||||| || ||| Sbjct 456129 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 456188 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| || ||||| || || || ||||| || ||||| ||| || || Sbjct 456189 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 456248 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | ||| | ||||||||||| | || Sbjct 456249 ACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 456308 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 456309 TTGACGAAGATCTGCATA 456326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063882184800