Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 192 9e-44 seq16 165 1e-35 seq7 129 9e-25 seq5 123 4e-23 seq6 91.5 2e-13 >seq1 Length=2053059 Score = 192 bits (212), Expect = 9e-44 Identities = 333/476 (70%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| || || |||||| | ||| ||||| | || || |||||||||||| Sbjct 2014655 CAGGGCGGCGGCAAGAGGAAAGGCGCATTCGCCATCTACCTCGAGCCGTGGCACGCGGAC 2014714 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || |||| |||| | ||||| ||| ||| || ||||| || ||||||||| Sbjct 2014715 ATCTTCGACTGGCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCCAGGGAC 2014774 Query 96996 TTGTTTTATGCACTCTGGGTGCCA--GATTTGTTCATGAAGCGCGTCAACGACGGTGGCT 97053 |||| || | || ||| ||| ||| ||||||||||||||||| | | ||| Sbjct 2014775 CTGTTCTACGGCCTGTGG--ACCAACGATCTGTTCATGAAGCGCGTCGAGGCTAACGGCG 2014832 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 | |||| ||| | |||||| || | || ||||| | |||||||||||||| |||| Sbjct 2014833 AGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCTCGCGGATTGCTGGGGCGAGGAGT 2014892 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC--CGATACGTGAGACGAGTCGATGC 97171 | ||||| |||| |||||| |||||| | || | ||||| ||| | || Sbjct 2014893 TCGAGGCTCTGTACGAAAAGTACGAGGCGGAGGGCAAGGGTAAG-AAGACG-GTCAAGGC 2014950 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | || ||| |||||| | | | ||||| |||||||| | |||||||| || Sbjct 2014951 CCAGCAGCTCTGGTTCGCCATCCTCGAGTCCCAGGTTGAGACTGGTAACCCGTACATGCT 2015010 Query 97232 CTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 || ||||||| |||| || ||||| |||||| | || | ||||||||| || Sbjct 2015011 CTTCAAGGAT-GCGTGCAACCGCAAGTCCAACCAGCAGAACCTCGGCACCATCCGATCCT 2015069 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 |||| || ||||| || ||||| |||||| |||| ||||| ||||| || || ||| Sbjct 2015070 CCAACCTCTGCACCGAGATTGTCGAGTACACCTCGCCGGAGGAGACCGCGGTGTGC 2015125 Score = 100 bits (110), Expect = 4e-16 Identities = 139/194 (72%), Gaps = 18/194 (9%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC------GATATGGCTGCC 98090 ||||||||||| ||||||||||| |||| || ||| || ||||| ||| Sbjct 2015900 ATCTACAAGACGGTCTGGGAGAT------CAAGCAGCGCATCCTCGTGGACATGGCCGCC 2015953 Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150 ||| | || | || ||| |||||| || |||||||| || || | |||| ||| Sbjct 2015954 GACCGCGGCGCCTTCATCGACCAGTCGCAGTCGTTCAACGTGCACATGTCCGACGCCA-- 2016011 Query 98151 TACAGTCGTA---TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGC 98207 |||| ||| |||| ||| | ||||||||||| ||||| |||||||| || || ||| Sbjct 2016012 -ACAGCGGTAAGCTGACGTCGCTGCACTTTTACGCGTGGAAGAAGGGCCTTAAAACCGGC 2016070 Query 98208 ATGTACTATCTGAG 98221 |||||||| || || Sbjct 2016071 ATGTACTACCTCAG 2016084 >seq16 Length=608929 Score = 165 bits (182), Expect = 1e-35 Identities = 479/734 (65%), Gaps = 20/734 (3%) Strand=Plus/Minus Query 126986 CAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTGGCGATCGCTGCAATCGTGTGATTGT 127045 ||||||| | ||||| ||||| | | ||| ||||| || | || ||||| |||| Sbjct 343417 CAAACTCGGGGGTGGTCGCCTGCTTGAGGGCGACGGCGAGGGCGCCGATGGTGTGGTTGT 343358 Query 127046 GCGGTCCACCTTGCAGGCCAGGAAACACGGCTCGTTCAATTTCCTGCTCTAGTGAT--TT 127103 | || || || || ||||| || ||||| || | | || ||||||| ||| | || Sbjct 343357 GGGGACCGCCCTGGAGGCCGGGGAACACCGCGCTGTTGATGGCCTGCTC--GTGCTCCTT 343300 Query 127104 GCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCAC 127163 ||| ||||| | ||| | || || |||| ||| | ||||||||| || ||||| || Sbjct 343299 CTTGTAGAAGATCATGCCGCCGCGGGGGCCTCGGAGGGACTTGTGCGTCGTGGTGGTGAC 343240 Query 127164 AATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTG 127223 ||||| | || || ||| | | || || | || | | ||| | ||||| Sbjct 343239 GATGTCGCTGTAGGGGAAAGGGTCGTCCACGATGTTCGCGGCGACGAGGCCGGAGATGTG 343180 Query 127224 TGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATA 127283 || || |||| ||| || ||| ||| | ||| ||||| | | || | || Sbjct 343179 CGCCATGTCGGACATGAGGTAGGCGCCCACCTTGTCGCAGATCTCCCTCATGCGCTTGTA 343120 Query 127284 GTCCAAGCGCCGAGGATA-GCA-ACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||| || || || || || || | |||||| ||||| ||| | || | | || Sbjct 343119 GTCGTAGTTGCGCGGGTACGCGGAC--GCGCCGGCGATGATCAGCTTGGGGCGGTACAGC 343062 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 |||| | | | || | | ||||||| ||| || || | || | | ||||| Sbjct 343061 ATGGCGTTGGCCTCGAGGGCGTCGTAGTCGATGAGGCCGGTGTCCTCGTCGAGCCTGTAC 343002 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT------------GCGGAATCCG 127449 |||| | ||||| |||| || || ||||| | || | ||| ||| Sbjct 343001 GGCAGGGACTCGAAGAAGATGGAGGTGGCGGAGATCTTCTTCTTGGGGGTGTAGAACCCG 342942 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||| |||||||| |||| |||||| ||||| |||||||| || ||||||| || | Sbjct 342941 TGCGTGAGGTGGCCGCCGTGGGGCAGGTCGAGGCCCATGATCCTGTCGTGCGGGTTGAGC 342882 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | | |||||||||||||||||||| ||||| ||| || || || || ||| Sbjct 342881 AGCGCGGTGTACACGGCAAAGTTGGCGGGGGAGCCGGAGAGCGCCTGGACGTTGACGCCC 342822 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATG 127629 || ||| || || | ||||||| ||| |||| ||| || | ||| | Sbjct 342821 CACTCGTCATCCTTGAGCCTGAACGCCTCGAGCGCGCGCTTCTGGCACAGGCGCTCGGTC 342762 Query 127630 CGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTTG 127689 ||||| |||||||| || || ||||| ||||| ||||| ||||| ||||||||| Sbjct 342761 TCGTCGATGAACTCGTTGCCGCCGTAGTAGCGCTTGCCGGGAAGGCCCTCGGAGTACTTG 342702 Query 127690 TTGATGAGACACGA 127703 ||| |||| ||||| Sbjct 342701 TTGGTGAGGCACGA 342688 >seq7 Length=1394110 Score = 129 bits (142), Expect = 9e-25 Identities = 125/158 (79%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTG 125475 |||||| |||||||||| ||||| ||| |||||||||||||| | ||| | |||||| Sbjct 900291 CGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTTTG 900350 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | || ||||| ||||||||||||||||| ||||||| ||| || || | |||||| Sbjct 900351 C-GCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGC 900409 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || || | ||||||||||| ||||| ||||| ||| Sbjct 900410 TCATCTCCAGGGACGAGGGCCTCCACTGCGACTTCGCC 900447 >seq5 Length=1518631 Score = 123 bits (136), Expect = 4e-23 Identities = 289/423 (68%), Gaps = 10/423 (2%) Strand=Plus/Minus Query 70056 ACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCA 70115 |||| | ||||| || || ||||| |||||||| ||||||||| | |||| ||| || Sbjct 815764 ACAGGGAGGAGGGTGACCTCGGGCCGGTGTACGGCTTCCAGTGGCGCCACTTCGGCGCCG 815705 Query 70116 AGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAAT 70173 |||| ||| ||| | | |||||| | |||||||| || || || | || || | Sbjct 815704 AGTACAAGGACATGCACGCC-GACTATACCGGTCAGGGAGTGGACCAGCTCGCGGAGG-T 815647 Query 70174 CATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC 70233 || |||| |||||| ||| || | || ||| | ||| | | | | ||||| || Sbjct 815646 GATCGACAAGATCAAGAACAACCCCAACGACAGGCGTATCCTGCTCACCGCGTGGAACCC 815587 Query 70234 TGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCG 70291 || | | | | ||||| || || ||||| ||| |||| || ||||||||| ||| Sbjct 815586 CGCGGCGCTCAAGGAGATGGCCCTGCCCCCGTGCCACATGTTCTGC-CAGTTTTACGTCG 815528 Query 70292 TACGATGGCAAATTGTCATGCTTAATGTATCAGAGGA-GTGCCGACATGGGCCTCGGTGT 70350 | | || | || || ||| ||||| |||||| |||| ||||||||||||||||| Sbjct 815527 CAA-ACGGTGAGTTATCGTGCCAGATGTACCAGAGGTCGTGC-GACATGGGCCTCGGTGT 815470 Query 70351 ACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCT 70410 ||||| ||||| || ||||| || || | || |||| | || || | ||| || Sbjct 815469 GCCCTTCAACATCGCGAGCTACTCCCTGCTCACCTGCATGGTGGCGCAGGTGTGCGGACT 815410 Query 70411 GAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGA 70470 ||| | || || || ||| | |||||| | |||||||| | || ||| |||| Sbjct 815409 GAAGCCCGGAGACTTTGTGCACTGCTGCGGCGACACCCACGTGTACTCCAACCACGTCGA 815350 Query 70471 GCC 70473 ||| Sbjct 815349 GCC 815347 >seq6 Length=1431126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTG 125475 |||||| | ||| | || ||||| | | |||||||||||||| || || | || || Sbjct 1273505 CGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTCTG 1273446 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | |||||| ||||| ||||||||||| ||||||||||| || || | |||||| Sbjct 1273445 CT-CCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGC 1273387 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || || ||||||||||| ||| | |||||||| Sbjct 1273386 TCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGC 1273350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059023998440