Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq5 111 1e-19
>seq5
Length=1518631
Score = 111 bits (122), Expect = 1e-19
Identities = 178/253 (70%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299
||||| || |||||||| | || ||||| ||| |||||| | | ||||| |
Sbjct 1420312 CCGGTGGATCCGAATCCTCCCGCACCTCGGTCCGTGGCGTCCAGGTCCTCCACCTCCAAA 1420253
Query 5300 ACTGCTGG-GTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358
|| | || ||| | ||||| ||| || |||||||| | | ||| |||||||| ||
Sbjct 1420252 ACCTCCGGCGTG-GTGATGCGCTCGAGGATGAGCTGAGCGACGCGGTCACCCTTCTTCAC 1420194
Query 5359 CTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTC 5418
||||||||| | | ||| ||| ||||| | || ||||| ||||| ||||| || |
Sbjct 1420193 CTCAAAGTCCTTCTCGCCGTGGTTGAACAGGATGACGCCGACGTTGCCGCGGTAATCGTA 1420134
Query 5419 GTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGC 5478
||||| ||||| ||||| |||||| ||||| || ||| || ||||| | || ||
Sbjct 1420133 GTCGACGACGCCCGCGCCGGTGTCGATGAAGTGCTTCCACGCGAGTCCGGACCTAGGGGC 1420074
Query 5479 TATGCGTCCGTAG 5491
||||| |||||
Sbjct 1420073 GATGCGCGCGTAG 1420061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447750293659280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |