Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 4e-13 >seq8 Length=1276107 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | | || || ||||||| ||||| Sbjct 456123 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGC-CGTCCTCGAGCTG 456181 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||| || || | | ||||||||| || || Sbjct 456182 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 456241 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| |||||| ||||| || ||||| || ||| Sbjct 456242 GGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCG 456299 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || |||||||| Sbjct 456300 GTGAGAGTCTTGACGAAGATCTGCAT 456325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | | || || | ||||| ||||| Sbjct 455439 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGC-CATCCTCGAGCTG 455497 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||| || || | | ||||||||| || || Sbjct 455498 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 455557 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| |||||| ||||| || ||||| || ||| Sbjct 455558 GGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCG 455615 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || |||||||| Sbjct 455616 GTGAGAGTCTTGACGAAGATCTGCAT 455641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | | || || | ||||| ||||| Sbjct 455667 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGC-CATCCTCGAGCTG 455725 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||| || || | | ||||||||| || || Sbjct 455726 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 455785 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| |||||| ||||| || ||||| || ||| Sbjct 455786 GGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCG 455843 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || |||||||| Sbjct 455844 GTGAGAGTCTTGACGAAGATCTGCAT 455869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | | || || | ||||| ||||| Sbjct 455895 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGC-CATCCTCGAGCTG 455953 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||| || || | | ||||||||| || || Sbjct 455954 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 456013 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| |||||| ||||| || ||||| || ||| Sbjct 456014 GGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCG 456071 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || |||||||| Sbjct 456072 GTGAGAGTCTTGACGAAGATCTGCAT 456097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251102454019