Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 154 2e-33 seq10 154 2e-33 seq5 154 2e-33 >seq12 Length=1084119 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 369826 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 369768 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || |||||||| |||||||| |||| || | |||| || |||| Sbjct 369767 TCCGCCGCCTCGCACGCCGTGGTGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 369708 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| |||||||| ||| ||| |||| ||| || | ||| |||| Sbjct 369707 CCCGCGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTGACCTACACCG 369648 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 369647 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 369588 Query 16671 GCCG 16674 |||| Sbjct 369587 GCCG 369584 >seq10 Length=1160640 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 542433 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 542375 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || |||||||| |||||||| |||| || | |||| || |||| Sbjct 542374 TCCGCCGCCTCGCACGCCGTGGTGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 542315 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| |||||||| ||| ||| |||| ||| || | ||| |||| Sbjct 542314 CCCGCGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTGACCTACACCG 542255 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 542254 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 542195 Query 16671 GCCG 16674 |||| Sbjct 542194 GCCG 542191 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 542881 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 542939 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || |||||||| |||||||| |||| || | |||| || |||| Sbjct 542940 TCCGCCGCCTCGCACGCCGTGGTGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 542999 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| |||||||| ||| ||| |||| ||| || | ||| |||| Sbjct 543000 CCCGCGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTGACCTACACCG 543059 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 543060 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 543119 Query 16671 GCCG 16674 |||| Sbjct 543120 GCCG 543123 >seq5 Length=1518631 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1043834 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1043892 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || |||||||| |||||||| |||| || | |||| || |||| Sbjct 1043893 TCCGCCGCCTCGCACGCCGTGGTGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1043952 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| |||||||| ||| ||| |||| ||| || | ||| |||| Sbjct 1043953 CCCGCGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTGACCTACACCG 1044012 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 1044013 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 1044072 Query 16671 GCCG 16674 |||| Sbjct 1044073 GCCG 1044076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075182628167