Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq19 610 2e-170 >seq19 Length=72585 Score = 610 bits (676), Expect = 2e-170 Identities = 711/957 (74%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 19311 ACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCT 19370 || |||||||| ||||| | |||||||| |||||| | ||||| ||| ||||| | Sbjct 10196 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACA 10255 Query 19371 GCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATA 19430 || ||| | || || | || ||||| || || || ||||||||||| ||||| || Sbjct 10256 GCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTATC 10315 Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490 ||||||||||| || || || | |||||||||||||| || || ||||| || ||| | Sbjct 10316 CGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAATC 10375 Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGAT 19550 || | || || || || ||||| ||||| || || ||||||||||| | || | ||| Sbjct 10376 CCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGAT 10435 Query 19551 GAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTA 19610 |||||| | |||||||| ||||| || || ||| | || | |||||||| || ||| | Sbjct 10436 GAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAATT 10495 Query 19611 GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATA 19670 ||||| ||| | ||||||| || |||| | | ||||||||| | || ||||| Sbjct 10496 TGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGATT 10555 Query 19671 TTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTT 19730 ||||| || | || || || ||||||| ||||| || |||| |||||| | Sbjct 10556 GCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAATC 10615 Query 19731 GGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 19790 || || || ||| |||||| |||||||||||||| ||||| ||||| ||||| ||| Sbjct 10616 GGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCATG 10675 Query 19791 TTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 19850 |||||||||| || || ||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 10676 ATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCT 10735 Query 19851 GGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC 19910 || ||||||||||| || ||||||||||| |||||||| | || ||||| || || Sbjct 10736 GGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCTC 10795 Query 19911 ATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGGCAAGATGA 19969 ||| || || |||||| | | || ||| ||| || || |||||||| ||||| || Sbjct 10796 ATCCGTGAGACTACTGAGAACGAGTCTGCA-AACGCAGGATACAAGTTCGGACAAGAAGA 10854 Query 19970 AGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGC 20029 |||||| || || || || ||||||||||| ||||| || | | || || ||||| || Sbjct 10855 AGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGC 10914 Query 20030 TTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCAT 20089 ||| ||||| || || ||||| | || ||||| || || | | || || | || || Sbjct 10915 TTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAAT 10974 Query 20090 ATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAA 20149 ||| | || | ||||| || | |||||||||||||||||||| || || ||||| || Sbjct 10975 CTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAA 11034 Query 20150 CCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAG 20209 |||||| ||||| ||| |||||| |||| |||||||||||| | |||| | Sbjct 11035 CCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCG 11094 Query 20210 AGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 ||||||||||| | ||||| ||||||||||| || ||||| |||||||||||||| Sbjct 11095 TGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGA 11151 Score = 610 bits (676), Expect = 2e-170 Identities = 711/957 (74%), Gaps = 2/957 (0%) Strand=Plus/Minus Query 19311 ACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCT 19370 || |||||||| ||||| | |||||||| |||||| | ||||| ||| ||||| | Sbjct 36947 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACA 36888 Query 19371 GCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATA 19430 || ||| | || || | || ||||| || || || ||||||||||| ||||| || Sbjct 36887 GCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTATC 36828 Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490 ||||||||||| || || || | |||||||||||||| || || ||||| || ||| | Sbjct 36827 CGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAATC 36768 Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGAT 19550 || | || || || || ||||| ||||| || || ||||||||||| | || | ||| Sbjct 36767 CCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGAT 36708 Query 19551 GAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTA 19610 |||||| | |||||||| ||||| || || ||| | || | |||||||| || ||| | Sbjct 36707 GAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAATT 36648 Query 19611 GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATA 19670 ||||| ||| | ||||||| || |||| | | ||||||||| | || ||||| Sbjct 36647 TGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGATT 36588 Query 19671 TTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTT 19730 ||||| || | || || || ||||||| ||||| || |||| |||||| | Sbjct 36587 GCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAATC 36528 Query 19731 GGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 19790 || || || ||| |||||| |||||||||||||| ||||| ||||| ||||| ||| Sbjct 36527 GGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCATG 36468 Query 19791 TTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 19850 |||||||||| || || ||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 36467 ATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCT 36408 Query 19851 GGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC 19910 || ||||||||||| || ||||||||||| |||||||| | || ||||| || || Sbjct 36407 GGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCTC 36348 Query 19911 ATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGGCAAGATGA 19969 ||| || || |||||| | | || ||| ||| || || |||||||| ||||| || Sbjct 36347 ATCCGTGAGACTACTGAGAACGAGTCTGCA-AACGCAGGATACAAGTTCGGACAAGAAGA 36289 Query 19970 AGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGC 20029 |||||| || || || || ||||||||||| ||||| || | | || || ||||| || Sbjct 36288 AGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGC 36229 Query 20030 TTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCAT 20089 ||| ||||| || || ||||| | || ||||| || || | | || || | || || Sbjct 36228 TTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAAT 36169 Query 20090 ATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAA 20149 ||| | || | ||||| || | |||||||||||||||||||| || || ||||| || Sbjct 36168 CTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAA 36109 Query 20150 CCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAG 20209 |||||| ||||| ||| |||||| |||| |||||||||||| | |||| | Sbjct 36108 CCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCG 36049 Query 20210 AGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 ||||||||||| | ||||| ||||||||||| || ||||| |||||||||||||| Sbjct 36048 TGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGA 35992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441567410364