Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq19 610 2e-170
>seq19
Length=72585
Score = 610 bits (676), Expect = 2e-170
Identities = 711/957 (74%), Gaps = 2/957 (0%)
Strand=Plus/Plus
Query 19311 ACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCT 19370
|| |||||||| ||||| | |||||||| |||||| | ||||| ||| ||||| |
Sbjct 10196 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACA 10255
Query 19371 GCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATA 19430
|| ||| | || || | || ||||| || || || ||||||||||| ||||| ||
Sbjct 10256 GCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTATC 10315
Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490
||||||||||| || || || | |||||||||||||| || || ||||| || ||| |
Sbjct 10316 CGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAATC 10375
Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGAT 19550
|| | || || || || ||||| ||||| || || ||||||||||| | || | |||
Sbjct 10376 CCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGAT 10435
Query 19551 GAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTA 19610
|||||| | |||||||| ||||| || || ||| | || | |||||||| || ||| |
Sbjct 10436 GAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAATT 10495
Query 19611 GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATA 19670
||||| ||| | ||||||| || |||| | | ||||||||| | || |||||
Sbjct 10496 TGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGATT 10555
Query 19671 TTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTT 19730
||||| || | || || || ||||||| ||||| || |||| |||||| |
Sbjct 10556 GCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAATC 10615
Query 19731 GGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 19790
|| || || ||| |||||| |||||||||||||| ||||| ||||| ||||| |||
Sbjct 10616 GGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCATG 10675
Query 19791 TTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 19850
|||||||||| || || ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 10676 ATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCT 10735
Query 19851 GGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC 19910
|| ||||||||||| || ||||||||||| |||||||| | || ||||| || ||
Sbjct 10736 GGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCTC 10795
Query 19911 ATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGGCAAGATGA 19969
||| || || |||||| | | || ||| ||| || || |||||||| ||||| ||
Sbjct 10796 ATCCGTGAGACTACTGAGAACGAGTCTGCA-AACGCAGGATACAAGTTCGGACAAGAAGA 10854
Query 19970 AGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGC 20029
|||||| || || || || ||||||||||| ||||| || | | || || ||||| ||
Sbjct 10855 AGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGC 10914
Query 20030 TTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCAT 20089
||| ||||| || || ||||| | || ||||| || || | | || || | || ||
Sbjct 10915 TTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAAT 10974
Query 20090 ATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAA 20149
||| | || | ||||| || | |||||||||||||||||||| || || ||||| ||
Sbjct 10975 CTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAA 11034
Query 20150 CCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAG 20209
|||||| ||||| ||| |||||| |||| |||||||||||| | |||| |
Sbjct 11035 CCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCG 11094
Query 20210 AGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266
||||||||||| | ||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 11095 TGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGA 11151
Score = 610 bits (676), Expect = 2e-170
Identities = 711/957 (74%), Gaps = 2/957 (0%)
Strand=Plus/Minus
Query 19311 ACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCT 19370
|| |||||||| ||||| | |||||||| |||||| | ||||| ||| ||||| |
Sbjct 36947 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACA 36888
Query 19371 GCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATA 19430
|| ||| | || || | || ||||| || || || ||||||||||| ||||| ||
Sbjct 36887 GCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTATC 36828
Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490
||||||||||| || || || | |||||||||||||| || || ||||| || ||| |
Sbjct 36827 CGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAATC 36768
Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGAT 19550
|| | || || || || ||||| ||||| || || ||||||||||| | || | |||
Sbjct 36767 CCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGAT 36708
Query 19551 GAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTA 19610
|||||| | |||||||| ||||| || || ||| | || | |||||||| || ||| |
Sbjct 36707 GAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAATT 36648
Query 19611 GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATA 19670
||||| ||| | ||||||| || |||| | | ||||||||| | || |||||
Sbjct 36647 TGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGATT 36588
Query 19671 TTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTT 19730
||||| || | || || || ||||||| ||||| || |||| |||||| |
Sbjct 36587 GCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAATC 36528
Query 19731 GGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 19790
|| || || ||| |||||| |||||||||||||| ||||| ||||| ||||| |||
Sbjct 36527 GGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCATG 36468
Query 19791 TTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 19850
|||||||||| || || ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 36467 ATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCT 36408
Query 19851 GGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC 19910
|| ||||||||||| || ||||||||||| |||||||| | || ||||| || ||
Sbjct 36407 GGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCTC 36348
Query 19911 ATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGGCAAGATGA 19969
||| || || |||||| | | || ||| ||| || || |||||||| ||||| ||
Sbjct 36347 ATCCGTGAGACTACTGAGAACGAGTCTGCA-AACGCAGGATACAAGTTCGGACAAGAAGA 36289
Query 19970 AGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGC 20029
|||||| || || || || ||||||||||| ||||| || | | || || ||||| ||
Sbjct 36288 AGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGC 36229
Query 20030 TTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCAT 20089
||| ||||| || || ||||| | || ||||| || || | | || || | || ||
Sbjct 36228 TTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAAT 36169
Query 20090 ATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAA 20149
||| | || | ||||| || | |||||||||||||||||||| || || ||||| ||
Sbjct 36168 CTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAA 36109
Query 20150 CCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAG 20209
|||||| ||||| ||| |||||| |||| |||||||||||| | |||| |
Sbjct 36108 CCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCG 36049
Query 20210 AGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266
||||||||||| | ||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 36048 TGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGA 35992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144441567410364
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