Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq19 715 0.0 >seq19 Length=72585 Score = 715 bits (792), Expect = 0.0 Identities = 757/996 (76%), Gaps = 1/996 (0%) Strand=Plus/Plus Query 170658 GGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTG 170717 |||||| |||||| ||| | || || ||||| || || | ||| | |||||||| | Sbjct 10168 GGGACGT-TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCG 10226 Query 170718 GTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCG 170777 | || ||||||||||| | | || || || || | ||||| |||||||| || | Sbjct 10227 GAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTG 10286 Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837 |||||||||| || |||||||| || ||| | || ||||| | || || | | || | Sbjct 10287 CTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACG 10346 Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897 | |||||||||||||||||||||||| | || | || ||||| || ||| | ||||||| Sbjct 10347 GAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCT 10406 Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957 | || |||||||||||||| || | || |||||| | |||||||| |||||||||||| Sbjct 10407 ACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGC 10466 Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017 | | | | |||||| | || ||||| | | | ||||||||| | ||||||| || | Sbjct 10467 TTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTT 10526 Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077 | | | | |||||||| | |||||||| |||||| ||||| || |||||| | |||| Sbjct 10527 CTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAG 10586 Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137 || || |||||| | || || ||| ||||||||||||| ||||||||||| ||||| | Sbjct 10587 CAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTC 10646 Query 171138 TAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAA 171197 | ||||| || || || |||||||||||| |||| ||||| || || |||||||| || | Sbjct 10647 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 10706 Query 171198 TGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAA 171257 ||||||| ||||| ||| ||||| || ||| | ||||||||| || ||| ||||| Sbjct 10707 TGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAA 10766 Query 171258 TGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAA 171317 |||||||||| || || || || ||||| ||| | ||||| |||||||||||| | || Sbjct 10767 TGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAA 10826 Query 171318 ACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGAT 171377 || || || |||||||||||||||||||| || || ||||| || ||||| || || | Sbjct 10827 ACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTT 10886 Query 171378 ACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCT 171437 ||||||| | | |||||||| || || |||||||||||||| |||||| | ||||||| Sbjct 10887 ACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCT 10946 Query 171438 TCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGG 171497 ||||||| | | || ||| | | | ||||| || |||||||||| | || |||| Sbjct 10947 TCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGG 11006 Query 171498 CATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG 171557 | ||||||||||||||||||||||||||||| || || |||||| |||||||| | Sbjct 11007 CTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAA 11066 Query 171558 TACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAA 171617 | ||||||| ||| | | ||| | || ||||| || |||||||| ||||| || Sbjct 11067 TTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGC 11126 Query 171618 GAAATGCACACAACTTCCCACTAGACCTAGCATCTG 171653 | || || |||||||||||||| ||||| ||||||| Sbjct 11127 GTAACGCTCACAACTTCCCACTTGACCTTGCATCTG 11162 Score = 715 bits (792), Expect = 0.0 Identities = 757/996 (76%), Gaps = 1/996 (0%) Strand=Plus/Minus Query 170658 GGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTG 170717 |||||| |||||| ||| | || || ||||| || || | ||| | |||||||| | Sbjct 36975 GGGACGT-TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCG 36917 Query 170718 GTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCG 170777 | || ||||||||||| | | || || || || | ||||| |||||||| || | Sbjct 36916 GAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTG 36857 Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837 |||||||||| || |||||||| || ||| | || ||||| | || || | | || | Sbjct 36856 CTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACG 36797 Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897 | |||||||||||||||||||||||| | || | || ||||| || ||| | ||||||| Sbjct 36796 GAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCT 36737 Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957 | || |||||||||||||| || | || |||||| | |||||||| |||||||||||| Sbjct 36736 ACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGC 36677 Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017 | | | | |||||| | || ||||| | | | ||||||||| | ||||||| || | Sbjct 36676 TTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTT 36617 Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077 | | | | |||||||| | |||||||| |||||| ||||| || |||||| | |||| Sbjct 36616 CTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAG 36557 Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137 || || |||||| | || || ||| ||||||||||||| ||||||||||| ||||| | Sbjct 36556 CAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTC 36497 Query 171138 TAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAA 171197 | ||||| || || || |||||||||||| |||| ||||| || || |||||||| || | Sbjct 36496 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 36437 Query 171198 TGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAA 171257 ||||||| ||||| ||| ||||| || ||| | ||||||||| || ||| ||||| Sbjct 36436 TGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAA 36377 Query 171258 TGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAA 171317 |||||||||| || || || || ||||| ||| | ||||| |||||||||||| | || Sbjct 36376 TGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAA 36317 Query 171318 ACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGAT 171377 || || || |||||||||||||||||||| || || ||||| || ||||| || || | Sbjct 36316 ACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTT 36257 Query 171378 ACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCT 171437 ||||||| | | |||||||| || || |||||||||||||| |||||| | ||||||| Sbjct 36256 ACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCT 36197 Query 171438 TCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGG 171497 ||||||| | | || ||| | | | ||||| || |||||||||| | || |||| Sbjct 36196 TCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGG 36137 Query 171498 CATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG 171557 | ||||||||||||||||||||||||||||| || || |||||| |||||||| | Sbjct 36136 CTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAA 36077 Query 171558 TACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAA 171617 | ||||||| ||| | | ||| | || ||||| || |||||||| ||||| || Sbjct 36076 TTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGC 36017 Query 171618 GAAATGCACACAACTTCCCACTAGACCTAGCATCTG 171653 | || || |||||||||||||| ||||| ||||||| Sbjct 36016 GTAACGCTCACAACTTCCCACTTGACCTTGCATCTG 35981 Score = 538 bits (596), Expect = 4e-148 Identities = 746/1046 (71%), Gaps = 29/1046 (3%) Strand=Plus/Plus Query 171791 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 171850 |||||||||| | || || ||| | ||| | ||||||||||||||| | || ||||| Sbjct 1991 ATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGGTC 2050 Query 171851 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910 || ||||| | || || ||||| ||| | ||| | || || ||||| ||||| || Sbjct 2051 AGGAATTTTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACAAC 2110 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970 ||||| || |||||||||||||| ||| | ||| ||||| ||||||||| ||||| Sbjct 2111 ATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAACTT 2170 Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030 | || | |||||||||||||| | | ||||| ||| || | |||| || Sbjct 2171 CCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTTTG 2230 Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090 |||||| || |||||||| || | ||| |||| ||| | |||||| |||||| || Sbjct 2231 GGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACATT 2290 Query 172091 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 172150 |||||| | || || | || ||| | || || || ||||| | || ||||| ||||| Sbjct 2291 CGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATTGC 2350 Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210 | | || || ||||| |||||||| | |||||||||||| ||| || ||||| Sbjct 2351 ACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTATT 2410 Query 172211 CACGAGCATC----TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTT 172266 | ||| || || || || ||| | || || | |||||||| ||||||| Sbjct 2411 ----TGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTT 2466 Query 172267 CATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAA 172326 |||||||||| || | ||| || |||| ||| | ||| | || || |||||||| | Sbjct 2467 CATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGA 2526 Query 172327 CTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTG 172386 | ||||| ||||| || |||||||| ||||| ||| ||||||| | |||| | || |||| Sbjct 2527 CACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTG 2586 Query 172387 CCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAG 172446 | || || || ||||| ||| |||||||| | | ||||| || | Sbjct 2587 CGATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGA---------------TG--G 2629 Query 172447 GTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATA 172506 | | ||||| | |||||| | ||||| | || || || | ||||| ||||| Sbjct 2630 TGATGGTTCAAAC----ACTTTCCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACT 2685 Query 172507 GTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAA 172566 ||| | || || ||| | |||||||||||||| || ||| |||| || || ||||| Sbjct 2686 CAATGGTAACAGCAAACCGTTTCTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGC 2745 Query 172567 GATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAG 172626 | | | |||||| ||||| | ||||||||||| | || | |||| ||| | | | Sbjct 2746 GTTGGCTTCACTTCTTTATGCTTTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTG 2805 Query 172627 GTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAG 172686 || | ||||| | |||||||||||| | ||||||||||| ||||| |||||||| | | Sbjct 2806 GTGTTGTAGGATTAGCACTTAACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTG 2865 Query 172687 CAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTA 172746 |||| ||||| || ||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct 2866 CAGCTGAAGATCCTGAGTTTGAAACATTCTACACTAAGAATATTCTTCTTAACGAAGGTA 2925 Query 172747 TGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAG 172806 | | ||||||||| || || ||||| || ||||| ||| |||| ||||| || || | Sbjct 2926 TTCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGG 2985 Query 172807 TCTTGCCACGAGGCAACGCACTATAA 172832 | | ||||| || ||||| || ||| Sbjct 2986 TACTTCCACGTGGAAACGCTCTTTAA 3011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268664561160