Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq19 715 0.0
>seq19
Length=72585
Score = 715 bits (792), Expect = 0.0
Identities = 757/996 (76%), Gaps = 1/996 (0%)
Strand=Plus/Plus
Query 170658 GGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTG 170717
|||||| |||||| ||| | || || ||||| || || | ||| | |||||||| |
Sbjct 10168 GGGACGT-TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCG 10226
Query 170718 GTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCG 170777
| || ||||||||||| | | || || || || | ||||| |||||||| || |
Sbjct 10227 GAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTG 10286
Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837
|||||||||| || |||||||| || ||| | || ||||| | || || | | || |
Sbjct 10287 CTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACG 10346
Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897
| |||||||||||||||||||||||| | || | || ||||| || ||| | |||||||
Sbjct 10347 GAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCT 10406
Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957
| || |||||||||||||| || | || |||||| | |||||||| ||||||||||||
Sbjct 10407 ACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGC 10466
Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017
| | | | |||||| | || ||||| | | | ||||||||| | ||||||| || |
Sbjct 10467 TTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTT 10526
Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077
| | | | |||||||| | |||||||| |||||| ||||| || |||||| | ||||
Sbjct 10527 CTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAG 10586
Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137
|| || |||||| | || || ||| ||||||||||||| ||||||||||| ||||| |
Sbjct 10587 CAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTC 10646
Query 171138 TAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAA 171197
| ||||| || || || |||||||||||| |||| ||||| || || |||||||| || |
Sbjct 10647 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 10706
Query 171198 TGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAA 171257
||||||| ||||| ||| ||||| || ||| | ||||||||| || ||| |||||
Sbjct 10707 TGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAA 10766
Query 171258 TGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAA 171317
|||||||||| || || || || ||||| ||| | ||||| |||||||||||| | ||
Sbjct 10767 TGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAA 10826
Query 171318 ACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGAT 171377
|| || || |||||||||||||||||||| || || ||||| || ||||| || || |
Sbjct 10827 ACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTT 10886
Query 171378 ACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCT 171437
||||||| | | |||||||| || || |||||||||||||| |||||| | |||||||
Sbjct 10887 ACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCT 10946
Query 171438 TCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGG 171497
||||||| | | || ||| | | | ||||| || |||||||||| | || ||||
Sbjct 10947 TCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGG 11006
Query 171498 CATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG 171557
| ||||||||||||||||||||||||||||| || || |||||| |||||||| |
Sbjct 11007 CTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAA 11066
Query 171558 TACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAA 171617
| ||||||| ||| | | ||| | || ||||| || |||||||| ||||| ||
Sbjct 11067 TTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGC 11126
Query 171618 GAAATGCACACAACTTCCCACTAGACCTAGCATCTG 171653
| || || |||||||||||||| ||||| |||||||
Sbjct 11127 GTAACGCTCACAACTTCCCACTTGACCTTGCATCTG 11162
Score = 715 bits (792), Expect = 0.0
Identities = 757/996 (76%), Gaps = 1/996 (0%)
Strand=Plus/Minus
Query 170658 GGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTG 170717
|||||| |||||| ||| | || || ||||| || || | ||| | |||||||| |
Sbjct 36975 GGGACGT-TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCG 36917
Query 170718 GTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCG 170777
| || ||||||||||| | | || || || || | ||||| |||||||| || |
Sbjct 36916 GAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTG 36857
Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837
|||||||||| || |||||||| || ||| | || ||||| | || || | | || |
Sbjct 36856 CTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACG 36797
Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897
| |||||||||||||||||||||||| | || | || ||||| || ||| | |||||||
Sbjct 36796 GAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCT 36737
Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957
| || |||||||||||||| || | || |||||| | |||||||| ||||||||||||
Sbjct 36736 ACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGC 36677
Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017
| | | | |||||| | || ||||| | | | ||||||||| | ||||||| || |
Sbjct 36676 TTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTT 36617
Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077
| | | | |||||||| | |||||||| |||||| ||||| || |||||| | ||||
Sbjct 36616 CTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAG 36557
Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137
|| || |||||| | || || ||| ||||||||||||| ||||||||||| ||||| |
Sbjct 36556 CAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTC 36497
Query 171138 TAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAA 171197
| ||||| || || || |||||||||||| |||| ||||| || || |||||||| || |
Sbjct 36496 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 36437
Query 171198 TGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAA 171257
||||||| ||||| ||| ||||| || ||| | ||||||||| || ||| |||||
Sbjct 36436 TGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAA 36377
Query 171258 TGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAA 171317
|||||||||| || || || || ||||| ||| | ||||| |||||||||||| | ||
Sbjct 36376 TGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAA 36317
Query 171318 ACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGAT 171377
|| || || |||||||||||||||||||| || || ||||| || ||||| || || |
Sbjct 36316 ACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTT 36257
Query 171378 ACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCT 171437
||||||| | | |||||||| || || |||||||||||||| |||||| | |||||||
Sbjct 36256 ACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCT 36197
Query 171438 TCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGG 171497
||||||| | | || ||| | | | ||||| || |||||||||| | || ||||
Sbjct 36196 TCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGG 36137
Query 171498 CATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG 171557
| ||||||||||||||||||||||||||||| || || |||||| |||||||| |
Sbjct 36136 CTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAA 36077
Query 171558 TACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAA 171617
| ||||||| ||| | | ||| | || ||||| || |||||||| ||||| ||
Sbjct 36076 TTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGC 36017
Query 171618 GAAATGCACACAACTTCCCACTAGACCTAGCATCTG 171653
| || || |||||||||||||| ||||| |||||||
Sbjct 36016 GTAACGCTCACAACTTCCCACTTGACCTTGCATCTG 35981
Score = 538 bits (596), Expect = 4e-148
Identities = 746/1046 (71%), Gaps = 29/1046 (3%)
Strand=Plus/Plus
Query 171791 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 171850
|||||||||| | || || ||| | ||| | ||||||||||||||| | || |||||
Sbjct 1991 ATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGGTC 2050
Query 171851 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910
|| ||||| | || || ||||| ||| | ||| | || || ||||| ||||| ||
Sbjct 2051 AGGAATTTTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACAAC 2110
Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970
||||| || |||||||||||||| ||| | ||| ||||| ||||||||| |||||
Sbjct 2111 ATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAACTT 2170
Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030
| || | |||||||||||||| | | ||||| ||| || | |||| ||
Sbjct 2171 CCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTTTG 2230
Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090
|||||| || |||||||| || | ||| |||| ||| | |||||| |||||| ||
Sbjct 2231 GGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACATT 2290
Query 172091 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 172150
|||||| | || || | || ||| | || || || ||||| | || ||||| |||||
Sbjct 2291 CGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATTGC 2350
Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210
| | || || ||||| |||||||| | |||||||||||| ||| || |||||
Sbjct 2351 ACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTATT 2410
Query 172211 CACGAGCATC----TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTT 172266
| ||| || || || || ||| | || || | |||||||| |||||||
Sbjct 2411 ----TGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTT 2466
Query 172267 CATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAA 172326
|||||||||| || | ||| || |||| ||| | ||| | || || |||||||| |
Sbjct 2467 CATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGA 2526
Query 172327 CTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTG 172386
| ||||| ||||| || |||||||| ||||| ||| ||||||| | |||| | || ||||
Sbjct 2527 CACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTG 2586
Query 172387 CCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAG 172446
| || || || ||||| ||| |||||||| | | ||||| || |
Sbjct 2587 CGATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGA---------------TG--G 2629
Query 172447 GTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATA 172506
| | ||||| | |||||| | ||||| | || || || | ||||| |||||
Sbjct 2630 TGATGGTTCAAAC----ACTTTCCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACT 2685
Query 172507 GTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAA 172566
||| | || || ||| | |||||||||||||| || ||| |||| || || |||||
Sbjct 2686 CAATGGTAACAGCAAACCGTTTCTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGC 2745
Query 172567 GATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAG 172626
| | | |||||| ||||| | ||||||||||| | || | |||| ||| | | |
Sbjct 2746 GTTGGCTTCACTTCTTTATGCTTTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTG 2805
Query 172627 GTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAG 172686
|| | ||||| | |||||||||||| | ||||||||||| ||||| |||||||| | |
Sbjct 2806 GTGTTGTAGGATTAGCACTTAACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTG 2865
Query 172687 CAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTA 172746
|||| ||||| || ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 2866 CAGCTGAAGATCCTGAGTTTGAAACATTCTACACTAAGAATATTCTTCTTAACGAAGGTA 2925
Query 172747 TGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAG 172806
| | ||||||||| || || ||||| || ||||| ||| |||| ||||| || || |
Sbjct 2926 TTCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGG 2985
Query 172807 TCTTGCCACGAGGCAACGCACTATAA 172832
| | ||||| || ||||| || |||
Sbjct 2986 TACTTCCACGTGGAAACGCTCTTTAA 3011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570268664561160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |