Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq8 140 2e-28
seq2 87.8 1e-12
>seq8
Length=1276107
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 884036 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 883977
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 883976 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 883942
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 899218 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 899159
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 899158 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 899124
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 925887 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 925828
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 925827 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 925793
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 882184 CTCTCTTTTCAAAGGTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 882125
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||||
Sbjct 882124 GCCAATATTTAGCCTTA 882108
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 897366 CTCTCTTTTCAAAGGTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 897307
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||||
Sbjct 897306 GCCAATATTTAGCCTTA 897290
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 924035 CTCTCTTTTCAAAGGTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 923976
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||||
Sbjct 923975 GCCAATATTTAGCCTTA 923959
>seq2
Length=1914325
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 6200 GTTCTACCGCTACAAAATG-CCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258
||||||||||||||| ||| ||||| ||| ||||| |||||||| || ||||| |
Sbjct 845309 GTTCTACCGCTACAAGATGCCCGCG-ATCCAGTCCAAGATCGAGGGTCGCGGTAACGGCA 845251
Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318
| || || ||| ||||||| || ||||| ||||| |||| ||||| ||||||
Sbjct 845250 TCAAGACGAACATCCCCAACATGGTCGACGTCGCCAAGGCTCTCGCCCGCCCGCCCACCT 845191
Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378
|| | || || || | || | ||| || ||||| | ||| ||| || | || | ||
Sbjct 845190 ACACCACCAAGTACATGGGCTACGAGCTCGGCGCGCTGACCAAGTGCGACGAGAAGAGCG 845131
Query 6379 AGCGC-TTCATCGTTAACGGATCGCA 6403
|| | | |||||| ||||| ||||
Sbjct 845130 -GCACGTACATCGTCAACGGCGCGCA 845106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947122438789
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |