Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8 140 2e-28 seq2 87.8 1e-12 >seq8 Length=1276107 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 884036 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 883977 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 883976 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 883942 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 899218 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 899159 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 899158 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 899124 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 925887 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 925828 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 925827 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 925793 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 882184 CTCTCTTTTCAAAGGTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 882125 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 882124 GCCAATATTTAGCCTTA 882108 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 897366 CTCTCTTTTCAAAGGTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 897307 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 897306 GCCAATATTTAGCCTTA 897290 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 924035 CTCTCTTTTCAAAGGTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 923976 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 923975 GCCAATATTTAGCCTTA 923959 >seq2 Length=1914325 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATG-CCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||||||||||||| ||| ||||| ||| ||||| |||||||| || ||||| | Sbjct 845309 GTTCTACCGCTACAAGATGCCCGCG-ATCCAGTCCAAGATCGAGGGTCGCGGTAACGGCA 845251 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 | || || ||| ||||||| || ||||| ||||| |||| ||||| |||||| Sbjct 845250 TCAAGACGAACATCCCCAACATGGTCGACGTCGCCAAGGCTCTCGCCCGCCCGCCCACCT 845191 Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 || | || || || | || | ||| || ||||| | ||| ||| || | || | || Sbjct 845190 ACACCACCAAGTACATGGGCTACGAGCTCGGCGCGCTGACCAAGTGCGACGAGAAGAGCG 845131 Query 6379 AGCGC-TTCATCGTTAACGGATCGCA 6403 || | | |||||| ||||| |||| Sbjct 845130 -GCACGTACATCGTCAACGGCGCGCA 845106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947122438789