Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq1 95.1 1e-14 seq15 87.8 2e-12 >seq6 Length=1431126 Score = 123 bits (136), Expect = 2e-23 Identities = 213/302 (71%), Gaps = 7/302 (2%) Strand=Plus/Minus Query 50986 TTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGT 51045 |||||||| ||||| || |||||||||||||| |||| | | || || | | ||| Sbjct 799703 TTAAACTTTCGCTTGCACCCCGCGTAGTTCATGTACCGAACCTTTCCGAACACGTCGCGC 799644 Query 51046 TCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTT 51104 ||||| | | |||| ||||| || ||||| || | |||||| || || || ||| || Sbjct 799643 TCTTTCCA-GCCCTGGTCGTGAACCCCGCAGATGGCCCACATGCACCCGACGTAACCATT 799585 Query 51105 AGGATCGCGACCATCCACGCT-GTAATGATCGTTTAGAAATATGGCATAACCCAATGCCA 51163 ||||||||||| |||| ||| ||| ||||| ||| | || || | || ||| Sbjct 799584 CGGATCGCGACCGTCCA-GCTGGTACCTGTCGTTGAGATAAATCGCCCGTCGCAGCGCCT 799526 Query 51164 TGTCTG--CACTAGGC-GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220 || | | || | | ||||| |||| || |||||||||||||||||||||| | | | Sbjct 799525 CCTCCGGTCCCTCGCCGGTCCACTCCAGGATCTTCTTGGCCCAGTACATGCGCAGGAACC 799466 Query 51221 CGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAG 51280 ||||||| ||||| | |||| | || |||| |||||| | |||||||| | Sbjct 799465 CGTGCATGGTGCCCAGGTGCGTCAGCTCCTTCTGCGCCGCGTTCCAGAGCTCGTCGTGCG 799406 Query 51281 TT 51282 || Sbjct 799405 TT 799404 >seq1 Length=2053059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 51015 CATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGCCT--GTCGTGCACACCG 51072 |||||| | || | ||||| ||| ||| ||| || | |||| ||| || || || Sbjct 927864 CATATAACGTATCTTTCCAAATATTGGGCGCTCT--GACCAGCCTTGGTCATGGACTCCC 927807 Query 51073 CAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTG-TAATG 51131 || |||||||| ||||||||||| ||| || |||||||||| |||| || | Sbjct 927806 ACGATCGACCACATGCAACCCACATATCCTGAAGGGTCACGACCATCCA-GCTGATATTT 927748 Query 51132 ATCGTTTAGAAATATGGCATAACCCAATGCCATG-TCTGCACTAGGCGTCCATTCCATAA 51190 ||||| ||| ||||| ||| | | | || |||| | ||||||||||| | Sbjct 927747 GTCGTTGAGATGAATGGCG-AACTCGAGAGCTTGATCTGGAGATTCTGTCCATTCCATGA 927689 Query 51191 TTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCC 51233 | ||||| ||||| ||||||||||| |||||||||||||||| Sbjct 927688 TCTTCTTTGCCCAATACATGCGCATAAAACCGTGCATCTTGCC 927646 >seq15 Length=739136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 ||||| || ||||||| |||| ||||||||||| ||||| ||||| | ||| Sbjct 297874 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGGCC 297815 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 || ||| ||||| || || || || |||||||| ||||| | || || || ||||| Sbjct 297814 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAG 297755 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || | || || | |||||| | | || ||||| || || || || ||||| || || Sbjct 297754 CAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 297695 Query 25203 TTAGTGCT 25210 | ||||| Sbjct 297694 CTCGTGCT 297687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327899657485