Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 2e-23
seq1 95.1 1e-14
seq15 87.8 2e-12
>seq6
Length=1431126
Score = 123 bits (136), Expect = 2e-23
Identities = 213/302 (71%), Gaps = 7/302 (2%)
Strand=Plus/Minus
Query 50986 TTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGT 51045
|||||||| ||||| || |||||||||||||| |||| | | || || | | |||
Sbjct 799703 TTAAACTTTCGCTTGCACCCCGCGTAGTTCATGTACCGAACCTTTCCGAACACGTCGCGC 799644
Query 51046 TCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTT 51104
||||| | | |||| ||||| || ||||| || | |||||| || || || ||| ||
Sbjct 799643 TCTTTCCA-GCCCTGGTCGTGAACCCCGCAGATGGCCCACATGCACCCGACGTAACCATT 799585
Query 51105 AGGATCGCGACCATCCACGCT-GTAATGATCGTTTAGAAATATGGCATAACCCAATGCCA 51163
||||||||||| |||| ||| ||| ||||| ||| | || || | || |||
Sbjct 799584 CGGATCGCGACCGTCCA-GCTGGTACCTGTCGTTGAGATAAATCGCCCGTCGCAGCGCCT 799526
Query 51164 TGTCTG--CACTAGGC-GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220
|| | | || | | ||||| |||| || |||||||||||||||||||||| | | |
Sbjct 799525 CCTCCGGTCCCTCGCCGGTCCACTCCAGGATCTTCTTGGCCCAGTACATGCGCAGGAACC 799466
Query 51221 CGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAG 51280
||||||| ||||| | |||| | || |||| |||||| | |||||||| |
Sbjct 799465 CGTGCATGGTGCCCAGGTGCGTCAGCTCCTTCTGCGCCGCGTTCCAGAGCTCGTCGTGCG 799406
Query 51281 TT 51282
||
Sbjct 799405 TT 799404
>seq1
Length=2053059
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/223 (71%), Gaps = 8/223 (4%)
Strand=Plus/Minus
Query 51015 CATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGCCT--GTCGTGCACACCG 51072
|||||| | || | ||||| ||| ||| ||| || | |||| ||| || || ||
Sbjct 927864 CATATAACGTATCTTTCCAAATATTGGGCGCTCT--GACCAGCCTTGGTCATGGACTCCC 927807
Query 51073 CAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTG-TAATG 51131
|| |||||||| ||||||||||| ||| || |||||||||| |||| || |
Sbjct 927806 ACGATCGACCACATGCAACCCACATATCCTGAAGGGTCACGACCATCCA-GCTGATATTT 927748
Query 51132 ATCGTTTAGAAATATGGCATAACCCAATGCCATG-TCTGCACTAGGCGTCCATTCCATAA 51190
||||| ||| ||||| ||| | | | || |||| | ||||||||||| |
Sbjct 927747 GTCGTTGAGATGAATGGCG-AACTCGAGAGCTTGATCTGGAGATTCTGTCCATTCCATGA 927689
Query 51191 TTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCC 51233
| ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 927688 TCTTCTTTGCCCAATACATGCGCATAAAACCGTGCATCTTGCC 927646
>seq15
Length=739136
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||| || ||||||| |||| ||||||||||| ||||| ||||| | |||
Sbjct 297874 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGGCC 297815
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| ||||| || || || || |||||||| ||||| | || || || |||||
Sbjct 297814 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAG 297755
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
|| | || || | |||||| | | || ||||| || || || || ||||| || ||
Sbjct 297754 CAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 297695
Query 25203 TTAGTGCT 25210
| |||||
Sbjct 297694 CTCGTGCT 297687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327899657485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |