Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-22 seq6 122 2e-22 seq2 114 3e-20 seq7 111 3e-19 seq5 104 5e-17 seq15 91.5 3e-13 >seq16 Length=608929 Score = 122 bits (134), Expect = 2e-22 Identities = 136/179 (76%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| || || |||||||| ||||| ||||| ||| || |||||| || || Sbjct 66608 GGCCCCAACGGCGCCGGTAAGTCCACCCTCATCAAGTGCCTCACCGGCGAGGTTGAGCCC 66667 Query 280239 ACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | || ||| |||| |||||||| ||||||||||| || |||||||| |||||||| Sbjct 66668 -CAGATGGGCACCGTGTGGAAGCACCCCAACATGCGTTATGCGTACGTCGCGCAGCACGC 66726 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 ||||||||| ||||| | ||||| || | ||| || ||| | ||||| | ||||||| Sbjct 66727 CTTCCACCACGTCGAGCAGCACCTCGAGAAGACGCCCAACGAGTACATCCGCTGGCGCT 66785 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || || || |||||||||||||| || ||| | |||||||| || || || || Sbjct 66134 CTCTCCGGCGGCTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCTCATGAAGGCTGAC 66193 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| || || || ||||| || |||||| | ||| | ||||| || ||||| | | Sbjct 66194 ATCCTCCTCCTCGACGAGCCCACGAACCACCTCGACGTGAAGAACGTCGCGTGGCTCGAG 66253 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 ||||| | | ||| | || || ||| | |||||||| ||||| || || ||| Sbjct 66254 GAGTACCTCTGCTCCCAGAACACCGTCTCCTCCATGATTGTCTCGCACGATTCCGGTTTC 66313 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 || || ||||||| | |||||| ||||| ||| Sbjct 66314 CTCGACCGCGTGTGCACGCACATCATCCACTACGAG 66349 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || || ||| |||||||| || ||| ||||| || || || || ||||||||| Sbjct 67136 GGCCTCGACGCCGAGTTTGGCACCCACAACCGCATCAAGGGCCTCTCCGGCGGCCAGAAG 67195 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| || ||| ||| || || ||||||| || || ||| | |||| | |||||| Sbjct 67196 GTCAAGCTCGTCCTCGCCGCCGCCATGTGGCAGCAGCCCCACATCGTCGTGATGGACGAG 67255 Query 280800 CCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 || |||||||| || |||||||| ||| ||||| || Sbjct 67256 CCCACCAACTACCTCGACCGCGACGCCCTCGGCGCCCT 67293 >seq6 Length=1431126 Score = 122 bits (134), Expect = 2e-22 Identities = 291/434 (67%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| || ||||| |||||||| ||||||| ||||| | Sbjct 1273080 TCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCATCCAGTCGAAAGGGTTGGCT 1273139 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||||| ||| | ||| || ||| || | | || || || ||||| | Sbjct 1273140 GCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAGGTGATCGGCGACGAACTCGATG 1273199 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 |||| ||| || || | ||||||||| | | || || | || || |||| Sbjct 1273200 TACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGCAGGGGAGCGCGTCGCAGACA 1273259 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT-TGCCTTCACCTGTGCCAGAGACA- 251800 || ||||| ||| | | || ||||||| || || ||||| || | | || | Sbjct 1273260 AACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCTG-AC----GACGGACTCGT 1273314 Query 251801 ---GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCG 251856 |||| || | | | ||||| ||||| | ||| ||| | |||| || |||||| Sbjct 1273315 TGGGCTTCTTGTTGATGTACGAGTAGAGGAGGCACGC-AAAGTCGCGGTGAAGGCCCTCG 1273373 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||||| ||||||| ||||||||| | ||||| ||||| | || || ||| | ||| Sbjct 1273374 TCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAGC 1273433 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||| |||| | ||| ||||| || ||||| | | ||||||| ||| | | || | Sbjct 1273434 CAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGATGCACGCGAACGCGATC 1273493 Query 251977 AGGCGCTCAGCAAA 251990 |||||||| || || Sbjct 1273494 AGGCGCTCGGCGAA 1273507 >seq2 Length=1914325 Score = 114 bits (126), Expect = 3e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 |||||||| |||| || ||||| ||| | ||||| |||| || || ||| | || Sbjct 1538815 GGACCCAACGGTGTCGGCAAGTCCACCATGATCAAGCTCCTCACCGGAGAGGTCGTCCCC 1538756 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 ||||| |||| |||||||| |||||| ||| | |||||||| || |||||||| Sbjct 1538755 CAGGAGGGTACCGTGTGGAAGCACCCCAACGCGCGCGTCGCTTACGTTGCGCAGCACGCC 1538696 Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 |||||||||||||| | ||||| || | ||| || ||| | ||||| | ||||||| Sbjct 1538695 TTCCACCACATCGAACAGCACCTCGAGAAGACCCCCAACGAGTACATCCGCTGGCGCT 1538638 >seq7 Length=1394110 Score = 111 bits (122), Expect = 3e-19 Identities = 289/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 251554 ACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAG 251613 || ||| | |||||||| || | |||||||| || || || | |||||| | ||||| Sbjct 900725 ACCCGGTGCTCGAAGAAGTTCGCCTTGCCCTGGAGCGATATCATCTCCATCCACTCGAAC 900666 Query 251614 GGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAG-TGCTACGAAGATGCGGTCTGCCAC 251672 ||||| | || || || ||| ||| || ||| | | | |||||| || || Sbjct 900665 GGGTTGGGGGTGTTCCACACCTTCTCCACGCCGAGCTGCGTC-ATCAGGCGGTCCGCGAC 900607 Query 251673 AAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGC 251732 |||||| | |||| ||| || || | ||||||||| | | || | | || Sbjct 900606 AAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGCGCGCACGACAGAGC 900547 Query 251733 CTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGC 251792 || || | || ||||| ||| || | || || |||| || || ||| || | | || Sbjct 900546 ATCGCACACAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATCTCCTGCAGCCGCGC 900487 Query 251793 CAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACC 251852 || || || || ||| | ||||| ||||| | | || | ||| || || Sbjct 900486 GGGATCGAGAGGGTGCTTGAGCATGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCC 900427 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| | ||||| ||||||||| | || || |||| | ||| || ||| | Sbjct 900426 CTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCGCATGAGCCCGCGCTTCTT 900367 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGC 251972 ||||||||||||||||||||| ||||| ||||| | | ||||| || ||| | | || Sbjct 900366 GAGCCAGAAGATTGCGCAAAACGATCCGGAGAAGAAGATGCCCTCCACGCACGCGAACGC 900307 Query 251973 AACAAGGCGCTCAGCAAA 251990 || || ||||| || || Sbjct 900306 CACCAGTCGCTCGGCGAA 900289 >seq5 Length=1518631 Score = 104 bits (114), Expect = 5e-17 Identities = 649/1032 (63%), Gaps = 50/1032 (5%) Strand=Plus/Plus Query 217825 AACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACC 217884 ||||| | | |||||| |||||||| || || || ||||| || | || || Sbjct 239068 AACTCCGAGCACTGCACCCTCATCCTTACCGAAGGTGACTCGGCGAAGGCACTTGCGGTG 239127 Query 217885 GCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTG 217944 | || || |||| || ||||| || | || || ||||||| ||||| |||||||| Sbjct 239128 TCCGGCCTCTCCGTCGTCGGTCGCGATCGATACGGCGTCTTCCCGCTCCGCGGTAAGCTT 239187 Query 217945 CTCAACGTGCGCGATGC----CTCGGTTTCA-AGCATTGCTGCA-AATGCAGAGATTGCC 217998 |||||||| || || || | || | || | ||| | | || || |||||| | Sbjct 239188 CTCAACGTTCGTGACGCGAGCCACGAT--CAGATCAT----GAACAACGCCGAGATTAAC 239241 Query 217999 GCCATCAAGCAAATCCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATGCGTCATCT--C 218056 ||||||||| ||||| || || | || | || ||| || | || || | Sbjct 239242 CACATCAAGCAGATCCTCGGCCTCCGCCACGGCACCACGTACGAG--TCCGCCAAGAGCC 239299 Query 218057 TGCGTTATGGCTCTGTCATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCG 218116 | || || || ||||| | ||||| ||| || ||||| |||||||| | Sbjct 239300 TCCGCTACGGTCACATCATGATCATGACCGATCAGGACCACGACGGCTCCCACATCAAGG 239359 Query 218117 CCCTCGTTATGAACTTCTTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCC 218176 ||| | || ||||| ||||||| || ||||| || ||| | || || |||| Sbjct 239360 GTCTCCTGATTAACTTTCTCCACGCGCATTTCCCATCGCTGCTCAAGATTCCCGGTTTCC 239419 Query 218177 TGAAGAAGTTTTCCACTCCCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAGTTTT 218236 | |||| ||| || ||| | ||| | || ||| | | ||| | || | Sbjct 239420 TCGTCGAGTTCATCACCCCGATCATCAAGGCGACCAAGGGCAAGCAGAGCAAGGTTTTCT 239479 Query 218237 ACAGTCTTCCTGACTATGAGAGTTGGAAGCAGAACACTG------------CCGACTGTG 218284 ||| ||||| || || || | ||||| || || | | ||| | | | Sbjct 239480 ACACCCTTCCCGAGTACGACAACTGGAAAGAGCACGCCGAGGAGACGGGAACCGGCCGCG 239539 Query 218285 CCAAATGGTCTATCAAGTATTTCAAGGGTCTCGGAACAAGCACATCCGAAGATGCCAAGA 218344 | ||| |||||||| | |||||||||||| || || || | || |||||| Sbjct 239540 GC---TGGAACATCAAGTACTACAAGGGTCTCGGTACGTCAACCGCCAAGGAAGCCAAGG 239596 Query 218345 AGTACTTCAAGAACCTCAAGTCGCTCGTGAAGATCTTTGGGTGGACCGAAGACTCTGGCG 218404 ||||||| ||| | | | ||||| ||| | ||||||| ||| | || Sbjct 239597 AGTACTTTGCCGCGCTCGACCACCACAAGAAGACCTTCGCGTGGACCACCGACGGCGACG 239656 Query 218405 ---AGCTCATCGACCGATCTTTCAACAAGT--CTCGTCCTGATGAGCGCAAGACCTGGCT 218459 | ||||||||| | |||| |||| | |||| || || |||||| | ||| | Sbjct 239657 GTAACCTCATCGACATGGCCTTCAGCAAGAAGCGCGTC--GAGGATCGCAAGGCGTGGTT 239714 Query 218460 GCTCGACTTCCAGCCCGGAAACCAGTTGGAC----CAGTCGAAGACCAACATCCCCGTCC 218515 | || || | |||| |||| | ||||| | | ||| ||| || || | Sbjct 239715 GAACGCCTACGAGCCGGGAACGTACCTGGACATGACGGGCGATGACGT-CAGGTACGAC- 239772 Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTC 218575 || |||||| ||||||||||||| || ||||| || ||| | ||| || || | Sbjct 239773 --GATTTCATCAACAAGGAGCTCATCCTCTTCTCCCGCGCGGATCTCATGCGATCGATCC 239830 Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635 | ||| || || || ||||||| |||||| | ||| | ||||| | ||||||| Sbjct 239831 CTTCCGTCGTCGACGGGTTCAAGCCCTCGCAGAGGAAGGTGCTCTTCTCGTGCTTCAAGC 239890 Query 218636 GGAACCT--GGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | || || || | || || || || || ||| | || || || || || || || Sbjct 239891 GTAAGCTCAAGTCC--GACATCAAAGTTGCGCAGCTCTCGGGCTACGTCTCTGAGCACTC 239948 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||| ||||| ||| || || | |||| || ||| | || || || | Sbjct 239949 CGCGTACCACCACGGCGAGGCCAGCCTCGCGTCCACCATCGTCGGCCTCGCGCAAGATTT 240008 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 ||| || || |||||| ||||| ||||| | ||| ||| ||||| ||| | || || Sbjct 240009 TGTCGGGAGCAACAACGTGAACCTGCTGGTGCCCTCCGGCCAGTTCGGTACCCGCCTGCA 240068 Query 218814 GGGTGGAAAGGA 218825 ||| || ||||| Sbjct 240069 GGGCGGTAAGGA 240080 >seq15 Length=739136 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| | ||||||||||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 398063 GCCTGATTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCATGGGTTCGAGC 398122 Query 142564 CCCACATCGGGCA 142576 |||| ||| |||| Sbjct 398123 CCCATATCAGGCA 398135 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| | ||||||||||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 535506 GCCTGATTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCATGGGTTCGAGC 535447 Query 142564 CCCACATCGGGCA 142576 |||| ||| |||| Sbjct 535446 CCCATATCAGGCA 535434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836549785979