Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq16 122 2e-22
seq6 122 2e-22
seq2 114 3e-20
seq7 111 3e-19
seq5 104 5e-17
seq15 91.5 3e-13
>seq16
Length=608929
Score = 122 bits (134), Expect = 2e-22
Identities = 136/179 (76%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| ||||| || || |||||||| ||||| ||||| ||| || |||||| || ||
Sbjct 66608 GGCCCCAACGGCGCCGGTAAGTCCACCCTCATCAAGTGCCTCACCGGCGAGGTTGAGCCC 66667
Query 280239 ACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297
| || ||| |||| |||||||| ||||||||||| || |||||||| ||||||||
Sbjct 66668 -CAGATGGGCACCGTGTGGAAGCACCCCAACATGCGTTATGCGTACGTCGCGCAGCACGC 66726
Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356
||||||||| ||||| | ||||| || | ||| || ||| | ||||| | |||||||
Sbjct 66727 CTTCCACCACGTCGAGCAGCACCTCGAGAAGACGCCCAACGAGTACATCCGCTGGCGCT 66785
Score = 96.9 bits (106), Expect = 7e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764
|| || || || |||||||||||||| || ||| | |||||||| || || || ||
Sbjct 66134 CTCTCCGGCGGCTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCTCATGAAGGCTGAC 66193
Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824
|||| || || || ||||| || |||||| | ||| | ||||| || ||||| | |
Sbjct 66194 ATCCTCCTCCTCGACGAGCCCACGAACCACCTCGACGTGAAGAACGTCGCGTGGCTCGAG 66253
Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884
||||| | | ||| | || || ||| | |||||||| ||||| || || |||
Sbjct 66254 GAGTACCTCTGCTCCCAGAACACCGTCTCCTCCATGATTGTCTCGCACGATTCCGGTTTC 66313
Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920
|| || ||||||| | |||||| ||||| |||
Sbjct 66314 CTCGACCGCGTGTGCACGCACATCATCCACTACGAG 66349
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739
|| || ||| |||||||| || ||| ||||| || || || || |||||||||
Sbjct 67136 GGCCTCGACGCCGAGTTTGGCACCCACAACCGCATCAAGGGCCTCTCCGGCGGCCAGAAG 67195
Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799
||||| || ||| ||| || || ||||||| || || ||| | |||| | ||||||
Sbjct 67196 GTCAAGCTCGTCCTCGCCGCCGCCATGTGGCAGCAGCCCCACATCGTCGTGATGGACGAG 67255
Query 280800 CCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837
|| |||||||| || |||||||| ||| ||||| ||
Sbjct 67256 CCCACCAACTACCTCGACCGCGACGCCCTCGGCGCCCT 67293
>seq6
Length=1431126
Score = 122 bits (134), Expect = 2e-22
Identities = 291/434 (67%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | ||| |||| || ||||| |||||||| ||||||| ||||| |
Sbjct 1273080 TCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCATCCAGTCGAAAGGGTTGGCT 1273139
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||||| ||| | ||| || ||| || | | || || || ||||| |
Sbjct 1273140 GCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAGGTGATCGGCGACGAACTCGATG 1273199
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
|||| ||| || || | ||||||||| | | || || | || || ||||
Sbjct 1273200 TACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGCAGGGGAGCGCGTCGCAGACA 1273259
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT-TGCCTTCACCTGTGCCAGAGACA- 251800
|| ||||| ||| | | || ||||||| || || ||||| || | | || |
Sbjct 1273260 AACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCTG-AC----GACGGACTCGT 1273314
Query 251801 ---GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCG 251856
|||| || | | | ||||| ||||| | ||| ||| | |||| || ||||||
Sbjct 1273315 TGGGCTTCTTGTTGATGTACGAGTAGAGGAGGCACGC-AAAGTCGCGGTGAAGGCCCTCG 1273373
Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916
||||| ||||||| ||||||||| | ||||| ||||| | || || ||| | |||
Sbjct 1273374 TCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAGC 1273433
Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976
||| |||| | ||| ||||| || ||||| | | ||||||| ||| | | || |
Sbjct 1273434 CAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGATGCACGCGAACGCGATC 1273493
Query 251977 AGGCGCTCAGCAAA 251990
|||||||| || ||
Sbjct 1273494 AGGCGCTCGGCGAA 1273507
>seq2
Length=1914325
Score = 114 bits (126), Expect = 3e-20
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|||||||| |||| || ||||| ||| | ||||| |||| || || ||| | ||
Sbjct 1538815 GGACCCAACGGTGTCGGCAAGTCCACCATGATCAAGCTCCTCACCGGAGAGGTCGTCCCC 1538756
Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298
||||| |||| |||||||| |||||| ||| | |||||||| || ||||||||
Sbjct 1538755 CAGGAGGGTACCGTGTGGAAGCACCCCAACGCGCGCGTCGCTTACGTTGCGCAGCACGCC 1538696
Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356
|||||||||||||| | ||||| || | ||| || ||| | ||||| | |||||||
Sbjct 1538695 TTCCACCACATCGAACAGCACCTCGAGAAGACCCCCAACGAGTACATCCGCTGGCGCT 1538638
>seq7
Length=1394110
Score = 111 bits (122), Expect = 3e-19
Identities = 289/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Minus
Query 251554 ACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAG 251613
|| ||| | |||||||| || | |||||||| || || || | |||||| | |||||
Sbjct 900725 ACCCGGTGCTCGAAGAAGTTCGCCTTGCCCTGGAGCGATATCATCTCCATCCACTCGAAC 900666
Query 251614 GGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAG-TGCTACGAAGATGCGGTCTGCCAC 251672
||||| | || || || ||| ||| || ||| | | | |||||| || ||
Sbjct 900665 GGGTTGGGGGTGTTCCACACCTTCTCCACGCCGAGCTGCGTC-ATCAGGCGGTCCGCGAC 900607
Query 251673 AAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGC 251732
|||||| | |||| ||| || || | ||||||||| | | || | | ||
Sbjct 900606 AAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGCGCGCACGACAGAGC 900547
Query 251733 CTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGC 251792
|| || | || ||||| ||| || | || || |||| || || ||| || | | ||
Sbjct 900546 ATCGCACACAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATCTCCTGCAGCCGCGC 900487
Query 251793 CAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACC 251852
|| || || || ||| | ||||| ||||| | | || | ||| || ||
Sbjct 900486 GGGATCGAGAGGGTGCTTGAGCATGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCC 900427
Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912
|||||| | ||||| ||||||||| | || || |||| | ||| || ||| |
Sbjct 900426 CTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCGCATGAGCCCGCGCTTCTT 900367
Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGC 251972
||||||||||||||||||||| ||||| ||||| | | ||||| || ||| | | ||
Sbjct 900366 GAGCCAGAAGATTGCGCAAAACGATCCGGAGAAGAAGATGCCCTCCACGCACGCGAACGC 900307
Query 251973 AACAAGGCGCTCAGCAAA 251990
|| || ||||| || ||
Sbjct 900306 CACCAGTCGCTCGGCGAA 900289
>seq5
Length=1518631
Score = 104 bits (114), Expect = 5e-17
Identities = 649/1032 (63%), Gaps = 50/1032 (5%)
Strand=Plus/Plus
Query 217825 AACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACC 217884
||||| | | |||||| |||||||| || || || ||||| || | || ||
Sbjct 239068 AACTCCGAGCACTGCACCCTCATCCTTACCGAAGGTGACTCGGCGAAGGCACTTGCGGTG 239127
Query 217885 GCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTG 217944
| || || |||| || ||||| || | || || ||||||| ||||| ||||||||
Sbjct 239128 TCCGGCCTCTCCGTCGTCGGTCGCGATCGATACGGCGTCTTCCCGCTCCGCGGTAAGCTT 239187
Query 217945 CTCAACGTGCGCGATGC----CTCGGTTTCA-AGCATTGCTGCA-AATGCAGAGATTGCC 217998
|||||||| || || || | || | || | ||| | | || || |||||| |
Sbjct 239188 CTCAACGTTCGTGACGCGAGCCACGAT--CAGATCAT----GAACAACGCCGAGATTAAC 239241
Query 217999 GCCATCAAGCAAATCCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATGCGTCATCT--C 218056
||||||||| ||||| || || | || | || ||| || | || || |
Sbjct 239242 CACATCAAGCAGATCCTCGGCCTCCGCCACGGCACCACGTACGAG--TCCGCCAAGAGCC 239299
Query 218057 TGCGTTATGGCTCTGTCATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCG 218116
| || || || ||||| | ||||| ||| || ||||| |||||||| |
Sbjct 239300 TCCGCTACGGTCACATCATGATCATGACCGATCAGGACCACGACGGCTCCCACATCAAGG 239359
Query 218117 CCCTCGTTATGAACTTCTTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCC 218176
||| | || ||||| ||||||| || ||||| || ||| | || || ||||
Sbjct 239360 GTCTCCTGATTAACTTTCTCCACGCGCATTTCCCATCGCTGCTCAAGATTCCCGGTTTCC 239419
Query 218177 TGAAGAAGTTTTCCACTCCCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAGTTTT 218236
| |||| ||| || ||| | ||| | || ||| | | ||| | || |
Sbjct 239420 TCGTCGAGTTCATCACCCCGATCATCAAGGCGACCAAGGGCAAGCAGAGCAAGGTTTTCT 239479
Query 218237 ACAGTCTTCCTGACTATGAGAGTTGGAAGCAGAACACTG------------CCGACTGTG 218284
||| ||||| || || || | ||||| || || | | ||| | | |
Sbjct 239480 ACACCCTTCCCGAGTACGACAACTGGAAAGAGCACGCCGAGGAGACGGGAACCGGCCGCG 239539
Query 218285 CCAAATGGTCTATCAAGTATTTCAAGGGTCTCGGAACAAGCACATCCGAAGATGCCAAGA 218344
| ||| |||||||| | |||||||||||| || || || | || ||||||
Sbjct 239540 GC---TGGAACATCAAGTACTACAAGGGTCTCGGTACGTCAACCGCCAAGGAAGCCAAGG 239596
Query 218345 AGTACTTCAAGAACCTCAAGTCGCTCGTGAAGATCTTTGGGTGGACCGAAGACTCTGGCG 218404
||||||| ||| | | | ||||| ||| | ||||||| ||| | ||
Sbjct 239597 AGTACTTTGCCGCGCTCGACCACCACAAGAAGACCTTCGCGTGGACCACCGACGGCGACG 239656
Query 218405 ---AGCTCATCGACCGATCTTTCAACAAGT--CTCGTCCTGATGAGCGCAAGACCTGGCT 218459
| ||||||||| | |||| |||| | |||| || || |||||| | ||| |
Sbjct 239657 GTAACCTCATCGACATGGCCTTCAGCAAGAAGCGCGTC--GAGGATCGCAAGGCGTGGTT 239714
Query 218460 GCTCGACTTCCAGCCCGGAAACCAGTTGGAC----CAGTCGAAGACCAACATCCCCGTCC 218515
| || || | |||| |||| | ||||| | | ||| ||| || || |
Sbjct 239715 GAACGCCTACGAGCCGGGAACGTACCTGGACATGACGGGCGATGACGT-CAGGTACGAC- 239772
Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTC 218575
|| |||||| ||||||||||||| || ||||| || ||| | ||| || || |
Sbjct 239773 --GATTTCATCAACAAGGAGCTCATCCTCTTCTCCCGCGCGGATCTCATGCGATCGATCC 239830
Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635
| ||| || || || ||||||| |||||| | ||| | ||||| | |||||||
Sbjct 239831 CTTCCGTCGTCGACGGGTTCAAGCCCTCGCAGAGGAAGGTGCTCTTCTCGTGCTTCAAGC 239890
Query 218636 GGAACCT--GGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693
| || || || | || || || || || ||| | || || || || || || ||
Sbjct 239891 GTAAGCTCAAGTCC--GACATCAAAGTTGCGCAGCTCTCGGGCTACGTCTCTGAGCACTC 239948
Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753
| ||||| ||||| ||| || || | |||| || ||| | || || || |
Sbjct 239949 CGCGTACCACCACGGCGAGGCCAGCCTCGCGTCCACCATCGTCGGCCTCGCGCAAGATTT 240008
Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813
||| || || |||||| ||||| ||||| | ||| ||| ||||| ||| | || ||
Sbjct 240009 TGTCGGGAGCAACAACGTGAACCTGCTGGTGCCCTCCGGCCAGTTCGGTACCCGCCTGCA 240068
Query 218814 GGGTGGAAAGGA 218825
||| || |||||
Sbjct 240069 GGGCGGTAAGGA 240080
>seq15
Length=739136
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| | ||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 398063 GCCTGATTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCATGGGTTCGAGC 398122
Query 142564 CCCACATCGGGCA 142576
|||| ||| ||||
Sbjct 398123 CCCATATCAGGCA 398135
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| | ||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 535506 GCCTGATTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCATGGGTTCGAGC 535447
Query 142564 CCCACATCGGGCA 142576
|||| ||| ||||
Sbjct 535446 CCCATATCAGGCA 535434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836549785979
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