Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 347 2e-90 seq6 259 9e-64 seq7 250 5e-61 seq2 98.7 2e-15 >seq1 Length=2053059 Score = 347 bits (384), Expect = 2e-90 Identities = 528/748 (71%), Gaps = 4/748 (1%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || |||||||| || || |||||||| |||||||| ||||||||||||||||||| Sbjct 2015133 GCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCGGTGCAGAGG 2015074 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || | | ||||||||| |||| ||| || ||||||||| |||||| || |||||| Sbjct 2015073 TTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCACGCATCCTTG 2015014 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||| | || || ||||| | ||||| |||||| | | |||||| | | Sbjct 2015013 AAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAACCAGAGCTGC 2014954 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||||||||| | | |||||||||| |||||||| |||||| |||||| Sbjct 2014953 TGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTCGTACAGAGCCTCG 2014894 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCA-CGACGCCGGGCACATGAGACTCC 244985 ||||| ||||||| || | || || ||||| || | ||||| | ||| ||| Sbjct 2014893 AACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTG--GGGCAGAAGAGGGTCC 2014836 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 |||||||| ||| ||| | || |||||| || ||| | |||| ||| | | ||| | Sbjct 2014835 ACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGCCGTAGAACA 2014776 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 ||||||||| | | ||| ||| ||| |||||| | || || | |||| |||| Sbjct 2014775 GGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAGTCGAAGA 2014716 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 ||| ||||||| ||||| | ||||| |||| ||||| || |||| ||| |||| Sbjct 2014715 TGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCCGCCCT 2014656 Query 245166 GGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 |||| || |||| || |||| |||| ||| || | || | |||||||| ||| Sbjct 2014655 GGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCGTTGGAGG 2014596 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 ||||||||||| |||||||| || | | || || | |||||||| || | Sbjct 2014595 TTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGACAGACCGA 2014536 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 ||||||||| |||||||||| ||||| ||||| ||| || |||||||| | Sbjct 2014535 TGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATGCCCTCGA 2014476 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 || ||| ||||||| || || || || || ||||||||||| |||| | | || Sbjct 2014475 TGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGGGTACCCG 2014416 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 ||||||| || |||||| |||||||| Sbjct 2014415 AGTTGAAGAGCGTGGGGGACGCGTGGGT 2014388 Score = 289 bits (320), Expect = 5e-73 Identities = 613/896 (68%), Gaps = 29/896 (3%) Strand=Plus/Minus Query 243730 GGGAGCCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCC 243789 |||| | ||| |||||| ||| | || |||||||| ||| ||| |||||||||||||| Sbjct 2016127 GGGATCGACGGTGAACTTGACCGCGTCGGCGGCGGCCCTGGACCTGAGGTAGTACATGCC 2016068 Query 243790 GGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAG 243849 ||| || || || | ||| |||| | ||||| | ||||||||| | | | Sbjct 2016067 GGTTTTAAGGCCCTTCTTCCACGCGTAAAAGTGCAGCGACGTCAGCTT----ACC----G 2016016 Query 243850 CTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGC 243909 || | || | ||| ||| | ||||| ||||| |||||||| ||||| ||| Sbjct 2016015 CTGTTGG----CGTCGGACATGTGCACGTTGAACGACTGCGACTGGTCGATGAAGG-CGC 2015961 Query 243910 C-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGA 243968 | || || ||||||||| | |||| ||| ||||| | |||||||||||| Sbjct 2015960 CGCGGTCGGCGGCCATGTCCACGAGGATGCGCTGCTTGATCTCCCAGACCGTCTTGTAGA 2015901 Query 243969 TGGGCTTGAGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATG 244027 | |||||||| ||||||| || ||| ||| || ||||| |||| | ||||| Sbjct 2015900 TCTCCTTGAGGTTGTCGGGGATGTCCAGCGA----CTGGACGGAGCCGTTGTTGGCGATG 2015845 Query 244028 AGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTCGACCAGGTG 244086 |||| | | | | | || ||| ||||||| || | || | || ||||| Sbjct 2015844 AGCTCGTTCTTGAGGCTGGGGTCCCAGAGGCCCATCTCGGTG-AGGTCGGAGAGGAGGTG 2015786 Query 244087 CCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAG 244146 | |||||| || ||||| || || ||||||||||| ||||| |||| | || Sbjct 2015785 CTGGTTCACGACGGTGAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGTGTA 2015726 Query 244147 CGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGA 244206 |||||||| || ||| ||||||||| ||||| | |||| ||| || |||||||||| Sbjct 2015725 CGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGGCGC 2015666 Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCTG-AGCTCGTTCCAG 244264 ||||||||| ||| | |||||||| ||| | ||| | ||| | ||| || ||||| Sbjct 2015665 CACCAGCAGGGAGTTGCGGACGCCGTG-CTCGGAGAT-CTTCGTCCGAAGCCCGGTCCAG 2015608 Query 244265 TCCCACATG-CCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCC 244323 || | || | | || | || || | |||||||||||||| || || | || Sbjct 2015607 TCGTGCCTGTCGCCGCCGGGCATCTCG-GTCAGGCCCCACATGTCGGGTTGGAGGACGCC 2015549 Query 244324 CTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACA 244383 ||| ||||||| ||| ||||| | ||||| |||||||||| ||| | | Sbjct 2015548 GTTGGAGACGGGGGAGCCTGGGTAGGACTCGTAGGTTCCGTCGCGCTTGGCGATGTCGTT 2015489 Query 244384 GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443 | |||| ||| |||||| |||||||||||||||||||| ||| | | || Sbjct 2015488 GGACTCGGTGAGCGCGGCGAAGTAGATGGTCTCGAAGATCTCGGCGTTGAGCTTCTTCGC 2015429 Query 244444 CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | | || |||||| ||||| | | |||||||||||||| || ||||| ||||| Sbjct 2015428 TTCGGGAGAGTCGAAGGGCATGCCGAGGAGGATGAAGACGTCGGCGAGGCCCTGAACGCC 2015369 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC-TTCGGGCACGGGGTAAAAGT 244562 || ||| ||||| ||||| | ||||| |||| |||| || | |||||||| ||| Sbjct 2015368 GAGGCCAATGGGCCTGTGCTTCATGTTGCTGCGCCTGGCGGTCTCG-ACGGGGTAGTAGT 2015310 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGC 244618 || ||||||| | ||||||||||||||| | | ||||| || ||||| ||| Sbjct 2015309 TGACGTCGATGATGCGGTTGAGGTTGCGGGTCACCTTGCGGGTGATCTCGGCGAGC 2015254 >seq6 Length=1431126 Score = 259 bits (286), Expect = 9e-64 Identities = 338/461 (73%), Gaps = 19/461 (4%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| |||| | ||| | || || | | ||||||||||||||||||| ||| ||||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 |||||||| |||||| ||| || || || |||||||| ||||||||||| ||||| Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGA 1273389 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||||||||| | |||||||| || || | |||||||| |||||||| | |||| | Sbjct 1273388 GCTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCG---TA 1273332 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAG--CG-GGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 | ||| | |||||| || ||| || ||| || ||| ||| |||||| || || Sbjct 1273331 CATCAACAAGAAGCCC---AACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGA 1273275 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 ||||||||||||||| || | |||| ||| |||| |||||||||||| || Sbjct 1273274 GATCGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGA 1273215 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGG----GTC 43044 ||||||| | |||||||| ||| ||||||||| || ||||| ||||| | | ||| Sbjct 1273214 TCTCATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTC 1273155 Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 || | |||||| | | ||| ||||||| |||||| |||||| | ||| Sbjct 1273154 GAAGGAG----TACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGG 1273099 Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | ||||||||||| |||||||||||||| | ||| |||||| Sbjct 1273098 GTAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACCAG 1273058 >seq7 Length=1394110 Score = 250 bits (276), Expect = 5e-61 Identities = 572/846 (68%), Gaps = 24/846 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||| ||||| || || ||||| ||| |||||||| ||||| ||| |||| Sbjct 899908 ATGTACAAGCAGGCGGAGGCGTCATTCTGGAGCGCGGAGGAGATCGACCTCTCCATGGAC 899967 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | ||||| | | ||| || ||||| || ||| || || | || || Sbjct 899968 TACAAGGACTGGGTGACGCTGAACGACAACGAGCAGCACTTCATCTCGCACGTCCTCGCG 900027 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT-GGCCACCAGGTTCATGAAAGA 42487 |||||||| || |||||||| || || |||||||| |||| || |||||||||| || Sbjct 900028 TTCTTCGCGGCGTCTGACGGGATCGTGCTCGAGAACCTAGGCCTCC-GGTTCATGAAGGA 900086 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 || ||| ||||| || ||||||| || ||| | ||||| |||||| | || Sbjct 900087 CGTCCAGCTGCCGGAGGCTCGGGCGTTCTACGCGTTTCAGCTCGCCATCGAGAACATCCA 900146 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGG 42607 ||| ||| ||||| || || |||| ||| || ||| ||| || || | Sbjct 900147 CTCGGAGACGTACGGGTTGCTCATCGACACCTACGTCAAGGACAGCGTGAAG---AAGAG 900203 Query 42608 GC---TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 || |||||| |||||| | | ||||| | | |||||| | ||||| || Sbjct 900204 GCACCTGTTCAGGGCCATTCACAACGTGCCCACGGTGGCGCGCAAGGCGCAGTGGGCCCT 900263 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTT-CGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 ||| |||||| || ||| || | ||| || |||| | ||||| || || | || Sbjct 900264 CAAGTGGATCCAG--TCCT--CGGAGTGTTTCGCCGAGCGACTGGTGGCGTTCGCGTGCG 900319 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 | ||||||||||||||||| || | || | | ||||||||||||||| || | | Sbjct 900320 TGGAGGGCATCTTCTTCTCCGGATCGTTTTGCGCAATCTTCTGGCTCAAGAAGCGCGGGC 900379 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 |||| ||| ||||||||||| ||||| |||||| |||||||||||| || || | | Sbjct 900380 TCATGCGCGGGCTCACCTTCTCCAACGAGCTCATCTCCAGGGACGAGGGCCTCCACTGCG 900439 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | ||| | |||| |||| | ||||| | |||| | Sbjct 900440 ACTTCGCCTGCCTCCTCTACTC---CATGCTCAAGCAC--CCTCTCGATCCCGCGCGGCT 900494 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | || ||| ||| ||| || ||||| |||||||||||||| | | | ||| Sbjct 900495 GCAGGAGATCGTCAAGGATGCGGTGGACATCGAGAAGGAGTTTGTGTGCGATGCTCTG-T 900553 Query 42962 CGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 |||| | || || ||||||||| || ||||||| | |||||||| ||| ||||| | Sbjct 900554 CGTGCGCGCTCGTGGGCATGAACGCGGATCTCATGTCCGAGTACATCGAGTTTGTCGCGG 900613 Query 43021 ACCATCTCCTGTGCCAGATGGGTCT-CAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 ||| || || ||| | || | || | | | ||||| || ||| ||||| Sbjct 900614 ACCGCCTGATGACGCAGCTCGGCGTGGAGAAG-GTGTGGAACACCCCCAACCCGTTCGAG 900672 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 | ||||||| || ||| | |||||||| | ||||| |||||| | || || | | | Sbjct 900673 TGGATGGAGATGATATCGCTCCAGGGCAAGGCGAACTTCTTCGAGCACCGGGTGGACCAG 900732 Query 43140 TACCAG 43145 || ||| Sbjct 900733 TATCAG 900738 >seq2 Length=1914325 Score = 98.7 bits (108), Expect = 2e-15 Identities = 302/457 (66%), Gaps = 20/457 (4%) Strand=Plus/Plus Query 242838 CGGGGCGCCCTGATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGC 242897 || |||||| | ||| || | || |||||||| || | |||||| | || |||| | Sbjct 662193 CGAGGCGCCTTCATCCTCTTCGAGGGCGTCGACCGCTGCGGTAAGACCACCCAGTCCACC 662252 Query 242898 ATGCTGGTCAAGGCCCTGCTGGAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGAC 242957 | |||||| || |||| || || ||| | ||||||||| | ||| ||| ||| Sbjct 662253 AAACTGGTCGAGTCCCTCAAGGCTGCCGGCGTCAACGCCGAGCTGTGGCGGTACCCCGAC 662312 Query 242958 AGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTGGAC 243017 |||||||| ||| || ||||||||||| ||||||| | | || ||||| Sbjct 662313 AGGACCACGGAGATGGGCAAGATGATCAACGCGTACCTCCAATCCTCCCTGGACATGGAC 662372 Query 243018 GATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA-AGCCGCCTCCGACCTGAA 243076 || | | | ||||| |||||| |||||||| ||||| | || | ||| | || Sbjct 662373 GACGGAGCCATCCACCTGCTGTTCAGCGCCAACCGCTGGGAGAAACG-CGCCGCCATG-- 662429 Query 243077 GCGCAAG--CTGATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGTTCTCCGGCGTA 243134 | | ||| ||| | || ||| |||| | ||| | ||| | | | |||||| Sbjct 662430 GAGAAAGCCCTGGGCGACGGCGTCACACTCGTCGTGGACAGGTACTCCTACAGCGGCGTG 662489 Query 243135 GCCTTCACGGCGGCGAAG-----CCCGGG-TTCGAGCTCGAGTGGTGTAAGCGAACCGA- 243187 || ||||| || |||||| |||||| |||| ||||||||||| ||| |||| Sbjct 662490 GCGTTCACCGCCGCGAAGGAGGTCCCGGGCCTCGACCTCGAGTGGTGCAAGGCTCCCGAG 662549 Query 243188 CGTGGGTCTGCCCAAGCCCGACCTGGTGGTGTTCCTGGCCATCGAGGCCTCCGCCGTGG- 243246 || ||| |||| | ||| ||| ||| | | ||| | ||| | || || || || Sbjct 662550 CGAGGG-CTGCTCCGGCCAGACGCCGTGCTCTACCTCGACAT---GCCCGTCGACGCGGC 662605 Query 243247 --AGAGCAGAGGCGGCTTCGGCGACGAGCGGTACGAG 243281 | | ||| || || ||||| || || || |||||| Sbjct 662606 CAAAACCAGGGGGGGGTTCGGGGAGGAACGATACGAG 662642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338975719440