Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq1 89.7 4e-13 >seq6 Length=1431126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/279 (69%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 37826 CACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCA 37885 |||| |||| |||| |||||||||| || | |||| || | ||| | ||||| Sbjct 799408 CACG-ACGAGCTCT---GGAACGCGGCGCAGAAGGAGCTGACGCACCTGGGCACCATGCA 799463 Query 37886 TCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTC---A 37942 || |||||||||| ||| |||||| || |||| ||| | | || | | | Sbjct 799464 CGGGTTCCTGCGCATGTACTGGGCCAAGAAGATCCTGGAGTGGACCGGCGAGGGACCGGA 799523 Query 37943 GACCGCGCT-CAACTACGCCATTTATCTCAATGATAAGTA-CAGCTTGGACGGGCGTGAT 38000 | ||||| | || || ||||||||||| || | ||| |||| ||||||| || ||| Sbjct 799524 GGAGGCGCTGCGACGG-GCGATTTATCTCAACGACAGGTACCAGC-TGGACGGTCGCGAT 799581 Query 38001 CCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGC 38060 || || ||||||||||| || ||||| | || |||||| | ||||| | |||| Sbjct 799582 CCGAATGGTTACGTCGGGTGCATGTGGGCCATCTGCGGGGTTCACGACCAGGGCTGGAAA 799641 Query 38061 GAGATTCCCATTTACGGCAAGATTCGGTACATGAACTAC 38099 ||| | | | ||| ||| ||||||||||||||||| Sbjct 799642 GAGCGCGACGTGTTCGGAAAGGTTCGGTACATGAACTAC 799680 >seq1 Length=2053059 Score = 89.7 bits (98), Expect = 4e-13 Identities = 226/339 (67%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 37790 ATACGTTTATTCGCTTAAGGTGTTTGAAAACGCCGACACGCACGATCTCTTGTGGAACGC 37849 |||| | |||||||| || |||||||| | || || || ||| | |||||||| Sbjct 927561 ATACCTGTATTCGCTGCAGCAATTTGAAAATGGAGAGACTCATGATGATCTATGGAACGC 927620 Query 37850 GGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCATGTATTGGTG 37909 || || | | | |||| || || |||||||| | |||||||||||||||| Sbjct 927621 AGCACAGTTGGAAATGGTGCACGGCGGCAAGATGCACGGTTTTATGCGCATGTATTGGGC 927680 Query 37910 CAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTACGCCATTTAT 37967 ||||| || |||||||| | || || |||| | || ||| | | ||||||| || Sbjct 927681 AAAGAAGATCATGGAATGGACAGA--ATCTCCAGATCAAGCTCTCGAGTTCGCCATTCAT 927738 Query 37968 CTCAATGATAAGTA-CAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCTGTTTGTG 38026 ||||| || || || |||| |||| || ||||| || || || || || || |||| Sbjct 927739 CTCAACGACAAATATCAGC-TGGATGGTCGTGACCCTTCAGGATATGTGGGTTGCATGTG 927797 Query 38027 GTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCAAGATTCG 38086 ||| || || | || || || |||| ||| || || | || ||||| || Sbjct 927798 GTCGATCGTGGGAGTCCATGACCAAGGCTGGTCAGAGCGCCCAATATTTGGAAAGATACG 927857 Query 38087 GTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGT 38125 || ||| |||| ||||| || | ||||| || || Sbjct 927858 TTATATGGCTTACAGTGGATGCGTAAAAAAGTTCAAGGT 927896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062308055238