Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq8 149 1e-30
seq5 141 2e-28
seq15 120 7e-22
seq4 109 1e-18
>seq8
Length=1276107
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || || || || | ||| || || ||||| || ||||| |||
Sbjct 456099 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456158
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || ||||||||||| ||||| || | |||
Sbjct 456159 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 456218
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | ||| || || ||
Sbjct 456219 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 456278
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 456279 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || || || || | ||| || || ||||| || ||||| |||
Sbjct 455415 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455474
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || | |||
Sbjct 455475 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455534
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | ||| || || ||
Sbjct 455535 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455594
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 455595 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || || || || | ||| || || ||||| || ||||| |||
Sbjct 455643 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455702
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || | |||
Sbjct 455703 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455762
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | ||| || || ||
Sbjct 455763 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455822
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 455823 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || || || || | ||| || || ||||| || ||||| |||
Sbjct 455871 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455930
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || | |||
Sbjct 455931 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455990
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | ||| || || ||
Sbjct 455991 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 456050
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 456051 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
>seq5
Length=1518631
Score = 141 bits (156), Expect = 2e-28
Identities = 659/1028 (64%), Gaps = 55/1028 (5%)
Strand=Plus/Minus
Query 325336 CGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTT 325395
|||||| |||||||| ||||||| | | |||||||||||| |||| || | |||
Sbjct 240087 CGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGGCCGGAGGGCACCAGCAGGTT 240028
Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455
| ||| ||||| |||||| |||| || || ||| ||||||| | | | || ||
Sbjct 240027 CACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACGATGG----TGGACGCGAGGC 239972
Query 325456 T----TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511
| ||||| ||||| || ||| ||||| | ||||| || || ||| ||||| |
Sbjct 239971 TGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTAGCCCGAGAGCTGCGCAACTT 239912
Query 325512 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 325571
| | ||||| | | | || |||||||| || | | ||| |||| || || || |
Sbjct 239911 TGATGTCGGACTTGAGCTTACGCTTGAAGCACGAGAAGAGCACCTTCCTCTGCGAGGGCT 239852
Query 325572 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAA 325631
|||| || || ||||| || || || ||| ||||| || ||||| | || |
Sbjct 239851 TGAACCCGTCGACGACGGAAGGGATCGATCGCATGAGATCCGCGCGGGAGAAGAGGATGA 239792
Query 325632 GTTCCTTGTCGATGAAGTCG-GGAACGGGA--ACCTCGGGCTTCTTGTGGTCAAGTTGAT 325688
| ||||||| |||||| ||| | || || | ||| | || | ||| || |
Sbjct 239791 GCTCCTTGTTGATGAAATCGTCGTACCTGACGTCATCGCCCGTCAT---GTCCAGGTACG 239735
Query 325689 TTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAAG 325748
|||| || ||||| || ||| |||| |||||||||||||| | || |||| |||| |
Sbjct 239734 TTCCCGGCTCGTAGGCGTTCAACCACGCCTTGCGATCCTCGACGCGCTTCTTGCTGAAGG 239675
Query 325749 AACGGTCAATGAGCT---CTCCGGAATCGGAAGTCCACATAAACGTCTTCATGAGAGACT 325805
||| ||||| | | || |||| |||||| || |||||| || | |
Sbjct 239674 CCATGTCGATGAGGTTACCGTCGCCGTCGGTGGTCCACGCGAAGGTCTTCTTGTG-GTGG 239616
Query 325806 TCAGATTGCTG--AAGTATTTTTTGGCATC---TGCACTGGAACTCGTACCAAGCCCCTT 325860
|| || || | ||||| | ||||| || || | || |||||| || |||||
Sbjct 239615 TC-GAGCGCGGCAAAGTACTCCTTGGCTTCCTTGGCGGTTGA---CGTACCGAGACCCTT 239560
Query 325861 AAAATACTTGGT----------CGTCCATTTCTTCATATCTT----GTG-TCTTCACGAA 325905
| |||||| | || || ||| | | || | ||| |||| | |
Sbjct 239559 GTAGTACTTGATGTTCCAGCCGCGGCCGGTTC-CCGTCTCCTCGGCGTGCTCTTTCC--A 239503
Query 325906 GTCTTCGAAGTCAGGAAGACTGAAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTAC 325965
|| ||| | || ||||| || | || | || | || ||||| | || |
Sbjct 239502 GTTGTCGTACTCGGGAAGGGTGTAGAAAACCTTGCTCTGCTTGCCCTTGGTCGCCTTGAT 239443
Query 325966 GATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAGCT 326025
||| || |||||||||| | ||| || ||||| | || || ||||||
Sbjct 239442 GATCGGGGTGATGAACTCGACGAGGAAACCGGGAATCTTGAGCAGCGATGGGAAATGCGC 239383
Query 326026 ATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCAT 326085
|||| |||||| || | |||||| ||||| | ||||| ||| ||||||||
Sbjct 239382 GTGGAGAAAGTTAATCAGGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCGGTCAT 239323
Query 326086 GATCATCACATGACCGTAACGAAGCGAGGACGTGTC---TTTGTACACTTTACCGGTTTG 326142
|||||| | |||||||| || || | | || | | |||| | ||| |
Sbjct 239322 GATCATGATGTGACCGTAGCGGAG---GCTCTTGGCGGACTCGTACGTGGTGCCGTGGCG 239266
Query 326143 AAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGG 326201
|||||||| || || |||| | | | | || || |||| ||| |||| || | ||
Sbjct 239265 GAGGCCGAGGATCTGCTTGATGTGGT-TAATCTCGGCGTTGTTCATGAT-CTGATCGTGG 239208
Query 326202 AT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGA 326260
| || || || ||||| | || || || || || ||||| || || |||| ||||||
Sbjct 239207 CTCGCGTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGAAGACGCCGTATCGATCGCGA 239148
Query 326261 CCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATG 326320
||||| ||||| || || | | ||||||| | || || || || || || || |||
Sbjct 239147 CCGACGACGGAGAGGCCGGACACCGCAAGTGCCTTCGCCGAGTCACCTTCGGTAAGGATG 239088
Query 326321 AGAGTGCA 326328
|| |||||
Sbjct 239087 AGGGTGCA 239080
>seq15
Length=739136
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || |||||||| | || ||||| || | ||| || || ||||| || |||||
Sbjct 297669 TGGCCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 297728
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
||||| ||||| ||||| || | || || || ||||||||||| ||||| || |
Sbjct 297729 GCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGG 297788
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || |||||||| || || || ||||| || || | ||| ||| ||
Sbjct 297789 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCC 297848
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449
|| ||||| ||||| ||||| |||||
Sbjct 297849 ACCTCGAGGGTGATGGTCTTGCCGGT 297874
>seq4
Length=1584431
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || ||||| || | ||| || || ||||| || ||||| |||
Sbjct 22772 CCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22713
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || |||
Sbjct 22712 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 22653
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || || || ||||| || || | ||| || || ||
Sbjct 22652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 22593
Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449
||||| ||||| ||||| |||||
Sbjct 22592 TCGAGGGTGATGGTCTTACCGGT 22570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654112827882
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