Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 149 1e-30 seq5 141 2e-28 seq15 120 7e-22 seq4 109 1e-18 >seq8 Length=1276107 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | ||| || || ||||| || ||||| ||| Sbjct 456099 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456158 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||| ||||| || | ||| Sbjct 456159 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 456218 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| || || || Sbjct 456219 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 456278 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 456279 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | ||| || || ||||| || ||||| ||| Sbjct 455415 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455474 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || | ||| Sbjct 455475 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455534 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| || || || Sbjct 455535 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455594 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 455595 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | ||| || || ||||| || ||||| ||| Sbjct 455643 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455702 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || | ||| Sbjct 455703 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455762 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| || || || Sbjct 455763 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 455822 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 455823 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | ||| || || ||||| || ||||| ||| Sbjct 455871 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455930 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || | ||| Sbjct 455931 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455990 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| || || || Sbjct 455991 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 456050 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 456051 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097 >seq5 Length=1518631 Score = 141 bits (156), Expect = 2e-28 Identities = 659/1028 (64%), Gaps = 55/1028 (5%) Strand=Plus/Minus Query 325336 CGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTT 325395 |||||| |||||||| ||||||| | | |||||||||||| |||| || | ||| Sbjct 240087 CGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGGCCGGAGGGCACCAGCAGGTT 240028 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 | ||| ||||| |||||| |||| || || ||| ||||||| | | | || || Sbjct 240027 CACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACGATGG----TGGACGCGAGGC 239972 Query 325456 T----TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511 | ||||| ||||| || ||| ||||| | ||||| || || ||| ||||| | Sbjct 239971 TGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTAGCCCGAGAGCTGCGCAACTT 239912 Query 325512 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 325571 | | ||||| | | | || |||||||| || | | ||| |||| || || || | Sbjct 239911 TGATGTCGGACTTGAGCTTACGCTTGAAGCACGAGAAGAGCACCTTCCTCTGCGAGGGCT 239852 Query 325572 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAA 325631 |||| || || ||||| || || || ||| ||||| || ||||| | || | Sbjct 239851 TGAACCCGTCGACGACGGAAGGGATCGATCGCATGAGATCCGCGCGGGAGAAGAGGATGA 239792 Query 325632 GTTCCTTGTCGATGAAGTCG-GGAACGGGA--ACCTCGGGCTTCTTGTGGTCAAGTTGAT 325688 | ||||||| |||||| ||| | || || | ||| | || | ||| || | Sbjct 239791 GCTCCTTGTTGATGAAATCGTCGTACCTGACGTCATCGCCCGTCAT---GTCCAGGTACG 239735 Query 325689 TTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAAG 325748 |||| || ||||| || ||| |||| |||||||||||||| | || |||| |||| | Sbjct 239734 TTCCCGGCTCGTAGGCGTTCAACCACGCCTTGCGATCCTCGACGCGCTTCTTGCTGAAGG 239675 Query 325749 AACGGTCAATGAGCT---CTCCGGAATCGGAAGTCCACATAAACGTCTTCATGAGAGACT 325805 ||| ||||| | | || |||| |||||| || |||||| || | | Sbjct 239674 CCATGTCGATGAGGTTACCGTCGCCGTCGGTGGTCCACGCGAAGGTCTTCTTGTG-GTGG 239616 Query 325806 TCAGATTGCTG--AAGTATTTTTTGGCATC---TGCACTGGAACTCGTACCAAGCCCCTT 325860 || || || | ||||| | ||||| || || | || |||||| || ||||| Sbjct 239615 TC-GAGCGCGGCAAAGTACTCCTTGGCTTCCTTGGCGGTTGA---CGTACCGAGACCCTT 239560 Query 325861 AAAATACTTGGT----------CGTCCATTTCTTCATATCTT----GTG-TCTTCACGAA 325905 | |||||| | || || ||| | | || | ||| |||| | | Sbjct 239559 GTAGTACTTGATGTTCCAGCCGCGGCCGGTTC-CCGTCTCCTCGGCGTGCTCTTTCC--A 239503 Query 325906 GTCTTCGAAGTCAGGAAGACTGAAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTAC 325965 || ||| | || ||||| || | || | || | || ||||| | || | Sbjct 239502 GTTGTCGTACTCGGGAAGGGTGTAGAAAACCTTGCTCTGCTTGCCCTTGGTCGCCTTGAT 239443 Query 325966 GATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAGCT 326025 ||| || |||||||||| | ||| || ||||| | || || |||||| Sbjct 239442 GATCGGGGTGATGAACTCGACGAGGAAACCGGGAATCTTGAGCAGCGATGGGAAATGCGC 239383 Query 326026 ATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCAT 326085 |||| |||||| || | |||||| ||||| | ||||| ||| |||||||| Sbjct 239382 GTGGAGAAAGTTAATCAGGAGACCCTTGATGTGGGAGCCGTCGTGGTCCTGATCGGTCAT 239323 Query 326086 GATCATCACATGACCGTAACGAAGCGAGGACGTGTC---TTTGTACACTTTACCGGTTTG 326142 |||||| | |||||||| || || | | || | | |||| | ||| | Sbjct 239322 GATCATGATGTGACCGTAGCGGAG---GCTCTTGGCGGACTCGTACGTGGTGCCGTGGCG 239266 Query 326143 AAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGG 326201 |||||||| || || |||| | | | | || || |||| ||| |||| || | || Sbjct 239265 GAGGCCGAGGATCTGCTTGATGTGGT-TAATCTCGGCGTTGTTCATGAT-CTGATCGTGG 239208 Query 326202 AT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGA 326260 | || || || ||||| | || || || || || ||||| || || |||| |||||| Sbjct 239207 CTCGCGTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGAAGACGCCGTATCGATCGCGA 239148 Query 326261 CCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATG 326320 ||||| ||||| || || | | ||||||| | || || || || || || || ||| Sbjct 239147 CCGACGACGGAGAGGCCGGACACCGCAAGTGCCTTCGCCGAGTCACCTTCGGTAAGGATG 239088 Query 326321 AGAGTGCA 326328 || ||||| Sbjct 239087 AGGGTGCA 239080 >seq15 Length=739136 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || |||||||| | || ||||| || | ||| || || ||||| || ||||| Sbjct 297669 TGGCCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 297728 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||| ||||| ||||| || | || || || ||||||||||| ||||| || | Sbjct 297729 GCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGG 297788 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || || || ||||| || || | ||| ||| || Sbjct 297789 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCC 297848 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449 || ||||| ||||| ||||| ||||| Sbjct 297849 ACCTCGAGGGTGATGGTCTTGCCGGT 297874 >seq4 Length=1584431 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | ||| || || ||||| || ||||| ||| Sbjct 22772 CCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22713 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || ||| Sbjct 22712 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 22653 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| || || || Sbjct 22652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 22593 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| ||||| ||||| Sbjct 22592 TCGAGGGTGATGGTCTTACCGGT 22570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654112827882