Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 141 2e-28 seq6 140 7e-28 >seq5 Length=1518631 Score = 141 bits (156), Expect = 2e-28 Identities = 671/1048 (64%), Gaps = 55/1048 (5%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 |||||||| || || | |||||| |||||||| ||||||| | | |||||||||| Sbjct 240107 GTGAAAATGTAACGGGGGGACGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGG 240048 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || |||| || | ||| | ||| ||||| |||||| |||| || || ||| ||| Sbjct 240047 CCGGAGGGCACCAGCAGGTTCACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACG 239988 Query 297557 ATGGTCCCTTGCAGAGATGCT----TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612 |||| | | | || ||| ||||| ||||| || ||| ||||| | ||||| Sbjct 239987 ATGG----TGGACGCGAGGCTGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTA 239932 Query 297613 ACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATAT 297672 || || ||| ||||| || | ||||| | | | || |||||||| || | | Sbjct 239931 GCCCGAGAGCTGCGCAACTTTGATGTCGGACTTGAGCTTACGCTTGAAGCACGAGAAGAG 239872 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATC 297732 ||| |||| || || || ||||| || || ||||| || || || ||| ||||| Sbjct 239871 CACCTTCCTCTGCGAGGGCTTGAACCCGTCGACGACGGAAGGGATCGATCGCATGAGATC 239812 Query 297733 GTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG-GGAACGGGA--ACCTCGGG 297789 || ||||| | || || ||||||| |||||| ||| | || || | ||| Sbjct 239811 CGCGCGGGAGAAGAGGATGAGCTCCTTGTTGATGAAATCGTCGTACCTGACGTCATCGCC 239752 Query 297790 CTTCTTGTGGTCAAGTTGATTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTC 297849 | || | ||| || | |||| || ||||| || ||| |||| ||||||||||||| Sbjct 239751 CGTCAT---GTCCAGGTACGTTCCCGGCTCGTAGGCGTTCAACCACGCCTTGCGATCCTC 239695 Query 297850 GGCTCGTGACTTGTTGAAAGAACGGTCAATGAGCT---CTCCGGAATCGGAAGTCCACAT 297906 | | || |||| |||| | ||| ||||| | | || |||| |||||| Sbjct 239694 GACGCGCTTCTTGCTGAAGGCCATGTCGATGAGGTTACCGTCGCCGTCGGTGGTCCACGC 239635 Query 297907 AAACGTCTTCATGAGAGACTTCAGATTGCTG--AAGTATTTTTTGGCATC---TGCACTG 297961 || |||||| || | | || || || | ||||| | ||||| || || | Sbjct 239634 GAAGGTCTTCTTGTG-GTGGTC-GAGCGCGGCAAAGTACTCCTTGGCTTCCTTGGCGGTT 239577 Query 297962 GAACTCGTACCAAGCCCCTTAAAATACTTGGT----------CGTCCATTTCTTCATATC 298011 || |||||| || ||||| | |||||| | || || ||| | | || Sbjct 239576 GA---CGTACCGAGACCCTTGTAGTACTTGATGTTCCAGCCGCGGCCGGTTC-CCGTCTC 239521 Query 298012 TT----GTG-TCTTCACGAAGTCTTCGAAGTCAGGAAGACTGAAAAATTCTCTGACTTCT 298066 | ||| |||| | ||| ||| | || ||||| || | || | || | Sbjct 239520 CTCGGCGTGCTCTTTCC--AGTTGTCGTACTCGGGAAGGGTGTAGAAAACCTTGCTCTGC 239463 Query 298067 TTTCCCTTCCTGGCAACTACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCT 298126 || ||||| | || | ||| || |||||||||| | ||| || ||||| | Sbjct 239462 TTGCCCTTGGTCGCCTTGATGATCGGGGTGATGAACTCGACGAGGAAACCGGGAATCTTG 239403 Query 298127 AGAAGATTAGGGAAACAGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCG 298186 || || |||||| |||| |||||| || | |||||| ||||| | ||| Sbjct 239402 AGCAGCGATGGGAAATGCGCGTGGAGAAAGTTAATCAGGAGACCCTTGATGTGGGAGCCG 239343 Query 298187 TCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTC---T 298243 || ||| |||||||||||||| | |||||||| || || | | || | Sbjct 239342 TCGTGGTCCTGATCGGTCATGATCATGATGTGACCGTAGCGGAG---GCTCTTGGCGGAC 239286 Query 298244 TTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTT 298302 | |||| | ||| | |||||||| || || |||| | | | | || || |||| Sbjct 239285 TCGTACGTGGTGCCGTGGCGGAGGCCGAGGATCTGCTTGATGTGGT-TAATCTCGGCGTT 239227 Query 298303 CTTCGTGATGCTTGCCACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGA 298361 ||| |||| || | || | || || || || || | || || || || || |||| Sbjct 239226 GTTCATGAT-CTGATCGTGGCTCGCGTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 239168 Query 298362 ACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGG 298421 | || || |||| ||||||||||| ||||| || || | | ||||||| | || | Sbjct 239167 AGACGCCGTATCGATCGCGACCGACGACGGAGAGGCCGGACACCGCAAGTGCCTTCGCCG 239108 Query 298422 AATCCCCCTCCGTCAGAATGAGAGTGCA 298449 | || || || || || ||||| ||||| Sbjct 239107 AGTCACCTTCGGTAAGGATGAGGGTGCA 239080 >seq6 Length=1431126 Score = 140 bits (154), Expect = 7e-28 Identities = 301/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| || |||| | | |||| | || || || | || ||||| ||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||| |||||| |||||| ||| || | ||||| |||||| | || |||||| Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||||| ||||||||||||||||||| | || | ||| || | || || | | Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGC-CTCCTCTACTCGTACAT 1273329 Query 243468 CCAGAACAAGCTACCATTCGAAACGGTC---AAACAAATCATCACAGAAGCAGTTGAAAA 243524 | | || |||| ||| ||| | ||| | || ||| ||| || || || || | Sbjct 1273328 CAACAAGAAGC--CCAA-CGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGAT 1273272 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| ||||| || | |||||||| | || ||| || | ||||||||| | || || Sbjct 1273271 CGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCT 1273212 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA-GA 243643 |||| |||||||||| ||||| ||||| | | | || | ||| || ||| || Sbjct 1273211 CATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGC-ATGTCGA 1273153 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | | ||||||| | ||||| || | || ||||||||||| || || || || || | Sbjct 1273152 AGGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGA 1273093 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| ||||| || Sbjct 1273092 CCAACTTCTTCGAGAAGCGCGT 1273071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879731517650