Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq5 141 2e-28
seq6 140 7e-28
>seq5
Length=1518631
Score = 141 bits (156), Expect = 2e-28
Identities = 671/1048 (64%), Gaps = 55/1048 (5%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
|||||||| || || | |||||| |||||||| ||||||| | | ||||||||||
Sbjct 240107 GTGAAAATGTAACGGGGGGACGCGTGGTCCTTACCGCCCTGCAGGCGGGTACCGAACTGG 240048
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| |||| || | ||| | ||| ||||| |||||| |||| || || ||| |||
Sbjct 240047 CCGGAGGGCACCAGCAGGTTCACGTTGTTGCTCCCGACAAAATCTTGCGCGAGGCCGACG 239988
Query 297557 ATGGTCCCTTGCAGAGATGCT----TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612
|||| | | | || ||| ||||| ||||| || ||| ||||| | |||||
Sbjct 239987 ATGG----TGGACGCGAGGCTGGCCTCGCCGTGGTGGTACGCGGAGTGCTCAGAGACGTA 239932
Query 297613 ACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATAT 297672
|| || ||| ||||| || | ||||| | | | || |||||||| || | |
Sbjct 239931 GCCCGAGAGCTGCGCAACTTTGATGTCGGACTTGAGCTTACGCTTGAAGCACGAGAAGAG 239872
Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATC 297732
||| |||| || || || ||||| || || ||||| || || || ||| |||||
Sbjct 239871 CACCTTCCTCTGCGAGGGCTTGAACCCGTCGACGACGGAAGGGATCGATCGCATGAGATC 239812
Query 297733 GTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG-GGAACGGGA--ACCTCGGG 297789
|| ||||| | || || ||||||| |||||| ||| | || || | |||
Sbjct 239811 CGCGCGGGAGAAGAGGATGAGCTCCTTGTTGATGAAATCGTCGTACCTGACGTCATCGCC 239752
Query 297790 CTTCTTGTGGTCAAGTTGATTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTC 297849
| || | ||| || | |||| || ||||| || ||| |||| |||||||||||||
Sbjct 239751 CGTCAT---GTCCAGGTACGTTCCCGGCTCGTAGGCGTTCAACCACGCCTTGCGATCCTC 239695
Query 297850 GGCTCGTGACTTGTTGAAAGAACGGTCAATGAGCT---CTCCGGAATCGGAAGTCCACAT 297906
| | || |||| |||| | ||| ||||| | | || |||| ||||||
Sbjct 239694 GACGCGCTTCTTGCTGAAGGCCATGTCGATGAGGTTACCGTCGCCGTCGGTGGTCCACGC 239635
Query 297907 AAACGTCTTCATGAGAGACTTCAGATTGCTG--AAGTATTTTTTGGCATC---TGCACTG 297961
|| |||||| || | | || || || | ||||| | ||||| || || |
Sbjct 239634 GAAGGTCTTCTTGTG-GTGGTC-GAGCGCGGCAAAGTACTCCTTGGCTTCCTTGGCGGTT 239577
Query 297962 GAACTCGTACCAAGCCCCTTAAAATACTTGGT----------CGTCCATTTCTTCATATC 298011
|| |||||| || ||||| | |||||| | || || ||| | | ||
Sbjct 239576 GA---CGTACCGAGACCCTTGTAGTACTTGATGTTCCAGCCGCGGCCGGTTC-CCGTCTC 239521
Query 298012 TT----GTG-TCTTCACGAAGTCTTCGAAGTCAGGAAGACTGAAAAATTCTCTGACTTCT 298066
| ||| |||| | ||| ||| | || ||||| || | || | || |
Sbjct 239520 CTCGGCGTGCTCTTTCC--AGTTGTCGTACTCGGGAAGGGTGTAGAAAACCTTGCTCTGC 239463
Query 298067 TTTCCCTTCCTGGCAACTACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCT 298126
|| ||||| | || | ||| || |||||||||| | ||| || ||||| |
Sbjct 239462 TTGCCCTTGGTCGCCTTGATGATCGGGGTGATGAACTCGACGAGGAAACCGGGAATCTTG 239403
Query 298127 AGAAGATTAGGGAAACAGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCG 298186
|| || |||||| |||| |||||| || | |||||| ||||| | |||
Sbjct 239402 AGCAGCGATGGGAAATGCGCGTGGAGAAAGTTAATCAGGAGACCCTTGATGTGGGAGCCG 239343
Query 298187 TCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTC---T 298243
|| ||| |||||||||||||| | |||||||| || || | | || |
Sbjct 239342 TCGTGGTCCTGATCGGTCATGATCATGATGTGACCGTAGCGGAG---GCTCTTGGCGGAC 239286
Query 298244 TTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTT 298302
| |||| | ||| | |||||||| || || |||| | | | | || || ||||
Sbjct 239285 TCGTACGTGGTGCCGTGGCGGAGGCCGAGGATCTGCTTGATGTGGT-TAATCTCGGCGTT 239227
Query 298303 CTTCGTGATGCTTGCCACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGA 298361
||| |||| || | || | || || || || || | || || || || || ||||
Sbjct 239226 GTTCATGAT-CTGATCGTGGCTCGCGTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 239168
Query 298362 ACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGG 298421
| || || |||| ||||||||||| ||||| || || | | ||||||| | || |
Sbjct 239167 AGACGCCGTATCGATCGCGACCGACGACGGAGAGGCCGGACACCGCAAGTGCCTTCGCCG 239108
Query 298422 AATCCCCCTCCGTCAGAATGAGAGTGCA 298449
| || || || || || ||||| |||||
Sbjct 239107 AGTCACCTTCGGTAAGGATGAGGGTGCA 239080
>seq6
Length=1431126
Score = 140 bits (154), Expect = 7e-28
Identities = 301/442 (68%), Gaps = 10/442 (2%)
Strand=Plus/Minus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
|| || ||||| || |||| | | |||| | || || || | || ||||| |||
Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||| |||||| |||||| ||| || | ||||| |||||| | || ||||||
Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467
||||||| ||||||||||||||||||| | || | ||| || | || || | |
Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGC-CTCCTCTACTCGTACAT 1273329
Query 243468 CCAGAACAAGCTACCATTCGAAACGGTC---AAACAAATCATCACAGAAGCAGTTGAAAA 243524
| | || |||| ||| ||| | ||| | || ||| ||| || || || || |
Sbjct 1273328 CAACAAGAAGC--CCAA-CGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGAT 1273272
Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584
||| ||||| || | |||||||| | || ||| || | ||||||||| | || ||
Sbjct 1273271 CGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCT 1273212
Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA-GA 243643
|||| |||||||||| ||||| ||||| | | | || | ||| || ||| ||
Sbjct 1273211 CATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGC-ATGTCGA 1273153
Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703
| | ||||||| | ||||| || | || ||||||||||| || || || || || |
Sbjct 1273152 AGGAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGA 1273093
Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725
| ||||||||||| ||||| ||
Sbjct 1273092 CCAACTTCTTCGAGAAGCGCGT 1273071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879731517650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |