Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1 356 2e-93
>seq1
Length=2053059
Score = 356 bits (394), Expect = 2e-93
Identities = 646/932 (69%), Gaps = 25/932 (3%)
Strand=Plus/Plus
Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777
||||||||||| | || ||| ||||||||| |||||||||||| | || |||| |
Sbjct 2014223 TACGATTACTTCGGCTACAAGACTCTGGAGCGATCGTACCTCCTCCGCGTCGACGGCAAG 2014282
Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837
| ||||| || || || ||||| ||||||||||||||||| || ||| | ||
Sbjct 2014283 ATCGTGGAGCGCCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCACA---AGGAT 2014339
Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGT--AT-ACCATGGCC 93894
|| ||| | | | | | |||||| | || | | || ||| ||
Sbjct 2014340 GTGGAGAAGGCCATCGACACCTACC---ACATGCTCTCCGAGCGCTGGATGACCCACGCG 2014396
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954
|||| || || |||||| |||| ||||| || ||| |||| ||||||||||| ||
Sbjct 2014397 TCCCCCACGCTCTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTCCTCATC 2014456
Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014
| | |||| || |||||| || || | ||| | ||||||||| || ||| ||||
Sbjct 2014457 GCCATGAAGGAGGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCGTGCATC 2014516
Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGT--GTCCACGACGTACGTGCCAGGGGTTCCT 94072
|| || | ||| || || ||||| || || |||||||| | || |||| |||||
Sbjct 2014517 TCCAAGTCCGCCGGCGGCATCGG--TCTGTCCATCCACGACATCCGCGCCACCTCTTCCT 2014574
Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132
|||||||||| ||||| || |||||||||||| || |||| ||||| || ||||| |||
Sbjct 2014575 ACATCCGCGGCACCAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTTAACG 2014634
Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192
|| | ||| | ||||| |||||||| || || | |||||| || | ||||| |||| |
Sbjct 2014635 ACACCGCGAGGTACGTCGACCAGGGCGGCGGCAAGAGGAAAGGCGCATTCGCCATCTACC 2014694
Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252
||||||| |||||||||||| | | | ||||||| || |||||||||||||| |
Sbjct 2014695 TCGAGCCGTGGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGGCAAGG 2014754
Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCA--GACCTTTTTATGAA 94310
| || | | ||||| ||||| ||||||| || ||| ||| || || || |||||
Sbjct 2014755 AGGAGGCGCGTGCCAGGGACCTGTTCTACGGCCTGTGG--ACCAACGATCTGTTCATGAA 2014812
Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370
||||||||| ||| || |||| || || || ||||| ||| | ||||| |||
Sbjct 2014813 GCGCGTCGAGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAA-GCCCCGG---GTC 2014868
Query 94371 -CGACGTTTG-TGGATCGCG--TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCA 94426
|| | ||| ||| || | || || | |||| | ||||| || ||||||
Sbjct 2014869 TCGCGGATTGCTGGGGCGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGGAGGGCA 2014928
Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486
||| | |||| | | || | |||| ||| ||| | || ||||| |
Sbjct 2014929 AGGGTAAGAAGACGGTCAAGGCCCAGCAGCTCTGGTTCGCCATCCTCGAGTCCCAGGTTG 2014988
Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546
|||| |||| || ||||| | |||||||| | |||| ||||||||||||||||
Sbjct 2014989 AGACTGGTAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCAGCAGA 2015048
Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606
||||||| ||| ||| || || |||||||||||||||||||| || || ||||
Sbjct 2015049 ACCTCGGCACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTCGCCGG 2015108
Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638
| |||| || ||||| ||||| | ||||||
Sbjct 2015109 AGGAGACCGCGGTGTGCAACCTCGCGTCCATC 2015140
Score = 174 bits (192), Expect = 2e-38
Identities = 238/331 (72%), Gaps = 5/331 (2%)
Strand=Plus/Plus
Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148
||| | ||||| ||||| ||||||||||| || |||||| | ||||| | |||||||||
Sbjct 2015651 AACTCCCTGCTGGTGGCGCCCATGCCCACCGCGTCCACGTCCCAGATTTTGGGCAACAAC 2015710
Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208
|||| ||||| || | |||||||||| | ||| | | || |||||| |||| || |||
Sbjct 2015711 GAGTGCTTCGAGCCGTACACCTCCAACATCTACGCCCGCCGCGTGCTCTCCGGCGAGTTC 2015770
Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAG 95268
||||| | ||| |||||||||| ||||| || |||| | |||| ||
Sbjct 2015771 ACCGTCGTGAACCAGCACCTCCTCTCCGACCTCACCGAGATGGGCCTCTGGGACCCCAGC 2015830
Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATC-CCGCAAATACCGGA 95327
|||||||| | || | | |||||||||||||||| || | | | || || ||
Sbjct 2015831 CTCAAGAACGAGCTCATCGCCAACAACGGCTCCGTCCAG----TCGCTGGACATCCCCGA 2015886
Query 95328 GGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCA 95387
|| |||||| | |||||||||| || ||||||||| ||||||| | | | |||
Sbjct 2015887 CAACCTCAAGGAGATCTACAAGACGGTCTGGGAGATCAAGCAGCGCATCCTCGTGGACAT 2015946
Query 95388 CGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418
|| |||| |||||| |||||||| ||||
Sbjct 2015947 GGCCGCCGACCGCGGCGCCTTCATCGACCAG 2015977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494723082503240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |