Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 172 5e-38 seq6 147 2e-30 seq7 141 9e-29 seq10 100 3e-16 seq8 89.7 5e-13 seq15 82.4 8e-11 >seq1 Length=2053059 Score = 172 bits (190), Expect = 5e-38 Identities = 567/866 (65%), Gaps = 24/866 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 || || ||||| || || || || || ||||| || |||| | |||||| || ||||| Sbjct 2015142 GCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGG-TGTACTCGACAATCTC 2015084 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 || |||||||||| | || ||| ||| | || ||||| ||| ||||| ||||| Sbjct 2015083 GGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCA 2015024 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 ||| || ||||||||||||||||| || ||||| || || | |||| ||| || Sbjct 2015023 CGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAA 2014964 Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 || || | ||| || ||| || | | |||||| |||||| || Sbjct 2014963 CC---AGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTC 2014907 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAG-GCCGGGACACTGATGCGGAC 153891 |||||| ||| ||||| ||||| |||| || ||||| ||||| | | || || | Sbjct 2014906 GTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTG-GGGC 2014848 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 | | || | |||| ||| || | |||||| |||||||||||| ||| | Sbjct 2014847 AGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACA 2014788 Query 153952 GCGCGTACATGAGGTCGCGCGC-CTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGAT 154008 | |||| | ||||| | || | || |||||| ||| ||| || | || | Sbjct 2014787 GGCCGTAGAACAGGTCCCTGGCACGCGC-CTCCTCCTTGCCGTGGTT--CTTGCGGAGGT 2014731 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 |||| | ||||||| |||||||| || || | ||||| ||| | || ||||| | Sbjct 2014730 CGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCC 2014671 Query 154069 GCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 ||| |||||||| ||||||| | | | | | ||| |||||||| | |||||| Sbjct 2014670 TCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGA 2014611 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGAT 154185 | |||| | | ||| |||||||| ||| | | | |||||| | | | Sbjct 2014610 TGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGT 2014551 Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCC 154245 | | | | || ||||||||| || |||| || ||| ||||| || || || Sbjct 2014550 GGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTAT 2014491 Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 ||||||||| |||||| ||| || | | ||| | ||||||||| ||| || | Sbjct 2014490 CGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGG 2014431 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCTC 154364 | | | || |||| ||||| ||||| |||||| || | ||| | || Sbjct 2014430 GGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGG-AG 2014372 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 | |||| |||| || |||||||| | || | |||| ||| ||||||| |||||| Sbjct 2014371 AGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATGGCGACG 2014315 Query 154425 CGCATGAGCATGTGCTGCGGACGTTC 154450 |||||||||| |||||| || || || Sbjct 2014314 CGCATGAGCAGGTGCTGGGGGCGCTC 2014289 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 ||| | ||||||| || || | ||| ||||||| || ||||| | |||| ||| ||| Sbjct 2015418 TCGAAGGGCATGCCGAGGAGGATGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAATG 2015359 Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATA 153503 || | |||||| |||||||||||| ||| || | | ||| |||| ||| ||||| Sbjct 2015358 GGCCTGTGCTTCATGTTGCTGCGCCTGGCGGTCTCGACGGGGTAGTAGTTGACGTCGATG 2015299 Query 153504 ATTTTGTTGAGGTTGCG 153520 || |||||||||||| Sbjct 2015298 ATGCGGTTGAGGTTGCG 2015282 >seq6 Length=1431126 Score = 147 bits (162), Expect = 2e-30 Identities = 303/449 (67%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 ||||||||| || | || ||||| |||||||| | || || |||||| ||| | Sbjct 1273504 GCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC 1273445 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||| | | || | | ||| | ||||||||||| || ||| ||||||| | Sbjct 1273444 TCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 1273385 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || |||||||| || || ||| ||||||||||||||| |||| || | | Sbjct 1273384 ATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACT---CGTACATC 1273328 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGC---ATGTTCAAGGAGGCGGTGGCTATC 52628 | | | || | || | || | || || |||||||||| || | ||| Sbjct 1273327 AACAAGAAGCCCAAC---GAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGATC 1273271 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || ||||||||| | | |||||| || || || | |||||||||||| | | Sbjct 1273270 GAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCTC 1273211 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748 |||| ||||||||||||||| || || |||| || | | |||||||| | | ||| Sbjct 1273210 ATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGAAG 1273151 Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 | | |||||| ||| || || || | ||| | ||| || || |||| |||||| Sbjct 1273150 GAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGACC 1273091 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| ||||||||||| || |||||||| Sbjct 1273090 AACTTCTTCGAGAAGCGCGTGGGCGAGTA 1273062 >seq7 Length=1394110 Score = 141 bits (156), Expect = 9e-29 Identities = 303/451 (67%), Gaps = 5/451 (1%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| ||||||| ||||| || |||||| | || || ||||| ||| | Sbjct 900292 GCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTTTGC 900351 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 || ||||| | | || | | || | |||| ||| || || ||| ||||||| | Sbjct 900352 GCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGCTC 900411 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || || | ||||| || || ||| ||||| || |||||| |||| | || | | Sbjct 900412 ATCTCCAGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCATGCTCAAG 900471 Query 52572 -ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 ||| | ||| | | | | | | || ||||||| ||||||| ||||| Sbjct 900472 CACCCTC----TCGATCCCGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACATCGA 900527 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 ||||||||| | | || ||| || || ||| |||||||||||||| | ||| Sbjct 900528 GAAGGAGTTTGTGTGCGATGCTCTGTCGTGCGCGCTCGTGGGCATGAACGCGGATCTCAT 900587 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTA 52750 || |||||||||||||||||| ||||| || ||| || ||||||||| | ||| Sbjct 900588 GTCCGAGTACATCGAGTTTGTCGCGGACCGCCTGATGACGCAGCTCGGCGTGGAGAAGGT 900647 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 | ||| | | ||| ||||| |||| ||| | | || ||||| |||||||| | || Sbjct 900648 GTGGAACACCCCCAACCCGTTCGAGTGGATGGAGATGATATCGCTCCAGGGCAAGGCGAA 900707 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 ||| |||||| | || || | | ||||| || Sbjct 900708 CTTCTTCGAGCACCGGGTGGACCAGTATCAG 900738 >seq10 Length=1160640 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358 |||| |||||||||| | |||||| |||| || | || |||| |||||||| | Sbjct 191292 TGGCGACGACGTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGT 191233 Query 57359 CGCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGA 57418 | ||||| ||||| ||||| || | ||| ||||||||||| |||||||||||| Sbjct 191232 CCTTGCCGTGCGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGA 191173 Query 57419 ACTCGTGAACGTGAAATCCGTGCAGGCCCCTCGGC-AGATTCATGATGTAGCCG 57471 ||||||| | ||| || |||||| | ||| |||| ||| | ||| || |||| Sbjct 191172 ACTCGTGGATGTGGAAGCCGTGCTTG-CCCGCGGCGAGACCCTTGAGGTCGCCG 191120 >seq8 Length=1276107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || ||||||||| || || || | Sbjct 456132 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 456191 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 456192 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 456251 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || || || ||||| || Sbjct 456252 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 456311 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 456312 ACGAAGATCTGCAT 456325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||||| || || || | Sbjct 455448 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 455507 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 455508 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 455567 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || || || ||||| || Sbjct 455568 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 455627 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 455628 ACGAAGATCTGCAT 455641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||||| || || || | Sbjct 455676 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 455735 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 455736 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 455795 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || || || ||||| || Sbjct 455796 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 455855 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 455856 ACGAAGATCTGCAT 455869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||||| || || || | Sbjct 455904 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 455963 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 455964 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 456023 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || || || ||||| || Sbjct 456024 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 456083 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 456084 ACGAAGATCTGCAT 456097 >seq15 Length=739136 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | || | | | |||||||| || ||||||||||| Sbjct 297671 GCCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 297730 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||||||| || || || | |||| || ||||| ||||| || || Sbjct 297731 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGG 297790 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 297791 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCAC 297850 Query 138567 CTCGA 138571 ||||| Sbjct 297851 CTCGA 297855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262282137680