Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1 172 5e-38
seq6 147 2e-30
seq7 141 9e-29
seq10 100 3e-16
seq8 89.7 5e-13
seq15 82.4 8e-11
>seq1
Length=2053059
Score = 172 bits (190), Expect = 5e-38
Identities = 567/866 (65%), Gaps = 24/866 (3%)
Strand=Plus/Minus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655
|| || ||||| || || || || || ||||| || |||| | |||||| || |||||
Sbjct 2015142 GCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGG-TGTACTCGACAATCTC 2015084
Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715
|| |||||||||| | || ||| ||| | || ||||| ||| ||||| |||||
Sbjct 2015083 GGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCA 2015024
Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772
||| || ||||||||||||||||| || ||||| || || | |||| ||| ||
Sbjct 2015023 CGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAA 2014964
Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832
|| || | ||| || ||| || | | |||||| |||||| ||
Sbjct 2014963 CC---AGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTC 2014907
Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAG-GCCGGGACACTGATGCGGAC 153891
|||||| ||| ||||| ||||| |||| || ||||| ||||| | | || || |
Sbjct 2014906 GTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTG-GGGC 2014848
Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951
| | || | |||| ||| || | |||||| |||||||||||| ||| |
Sbjct 2014847 AGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACA 2014788
Query 153952 GCGCGTACATGAGGTCGCGCGC-CTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGAT 154008
| |||| | ||||| | || | || |||||| ||| ||| || | || |
Sbjct 2014787 GGCCGTAGAACAGGTCCCTGGCACGCGC-CTCCTCCTTGCCGTGGTT--CTTGCGGAGGT 2014731
Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068
|||| | ||||||| |||||||| || || | ||||| ||| | || ||||| |
Sbjct 2014730 CGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCC 2014671
Query 154069 GCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125
||| |||||||| ||||||| | | | | | ||| |||||||| | ||||||
Sbjct 2014670 TCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGA 2014611
Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGAT 154185
| |||| | | ||| |||||||| ||| | | | |||||| | | |
Sbjct 2014610 TGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGT 2014551
Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCC 154245
| | | | || ||||||||| || |||| || ||| ||||| || || ||
Sbjct 2014550 GGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTAT 2014491
Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305
||||||||| |||||| ||| || | | ||| | ||||||||| ||| || |
Sbjct 2014490 CGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGG 2014431
Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCTC 154364
| | | || |||| ||||| ||||| |||||| || | ||| | ||
Sbjct 2014430 GGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGG-AG 2014372
Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424
| |||| |||| || |||||||| | || | |||| ||| ||||||| ||||||
Sbjct 2014371 AGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATGGCGACG 2014315
Query 154425 CGCATGAGCATGTGCTGCGGACGTTC 154450
|||||||||| |||||| || || ||
Sbjct 2014314 CGCATGAGCAGGTGCTGGGGGCGCTC 2014289
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443
||| | ||||||| || || | ||| ||||||| || ||||| | |||| ||| |||
Sbjct 2015418 TCGAAGGGCATGCCGAGGAGGATGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAATG 2015359
Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATA 153503
|| | |||||| |||||||||||| ||| || | | ||| |||| ||| |||||
Sbjct 2015358 GGCCTGTGCTTCATGTTGCTGCGCCTGGCGGTCTCGACGGGGTAGTAGTTGACGTCGATG 2015299
Query 153504 ATTTTGTTGAGGTTGCG 153520
|| ||||||||||||
Sbjct 2015298 ATGCGGTTGAGGTTGCG 2015282
>seq6
Length=1431126
Score = 147 bits (162), Expect = 2e-30
Identities = 303/449 (67%), Gaps = 9/449 (2%)
Strand=Plus/Minus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
||||||||| || | || ||||| |||||||| | || || |||||| ||| |
Sbjct 1273504 GCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC 1273445
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
|||||| | | || | | ||| | ||||||||||| || ||| ||||||| |
Sbjct 1273444 TCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 1273385
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571
|| |||||||| || || ||| ||||||||||||||| |||| || | |
Sbjct 1273384 ATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACT---CGTACATC 1273328
Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGC---ATGTTCAAGGAGGCGGTGGCTATC 52628
| | | || | || | || | || || |||||||||| || | |||
Sbjct 1273327 AACAAGAAGCCCAAC---GAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGATC 1273271
Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688
|| ||||||||| | | |||||| || || || | |||||||||||| | |
Sbjct 1273270 GAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCTC 1273211
Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748
|||| ||||||||||||||| || || |||| || | | |||||||| | | |||
Sbjct 1273210 ATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGAAG 1273151
Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808
| | |||||| ||| || || || | ||| | ||| || || |||| ||||||
Sbjct 1273150 GAGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGACC 1273091
Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||| ||||||||||| || ||||||||
Sbjct 1273090 AACTTCTTCGAGAAGCGCGTGGGCGAGTA 1273062
>seq7
Length=1394110
Score = 141 bits (156), Expect = 9e-29
Identities = 303/451 (67%), Gaps = 5/451 (1%)
Strand=Plus/Plus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
|||||||| ||||||| ||||| || |||||| | || || ||||| ||| |
Sbjct 900292 GCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTTTGC 900351
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
|| ||||| | | || | | || | |||| ||| || || ||| ||||||| |
Sbjct 900352 GCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGCTC 900411
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571
|| || | ||||| || || ||| ||||| || |||||| |||| | || | |
Sbjct 900412 ATCTCCAGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCATGCTCAAG 900471
Query 52572 -ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630
||| | ||| | | | | | | || ||||||| ||||||| |||||
Sbjct 900472 CACCCTC----TCGATCCCGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACATCGA 900527
Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690
||||||||| | | || ||| || || ||| |||||||||||||| | |||
Sbjct 900528 GAAGGAGTTTGTGTGCGATGCTCTGTCGTGCGCGCTCGTGGGCATGAACGCGGATCTCAT 900587
Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTA 52750
|| |||||||||||||||||| ||||| || ||| || ||||||||| | |||
Sbjct 900588 GTCCGAGTACATCGAGTTTGTCGCGGACCGCCTGATGACGCAGCTCGGCGTGGAGAAGGT 900647
Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810
| ||| | | ||| ||||| |||| ||| | | || ||||| |||||||| | ||
Sbjct 900648 GTGGAACACCCCCAACCCGTTCGAGTGGATGGAGATGATATCGCTCCAGGGCAAGGCGAA 900707
Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
||| |||||| | || || | | ||||| ||
Sbjct 900708 CTTCTTCGAGCACCGGGTGGACCAGTATCAG 900738
>seq10
Length=1160640
Score = 100 bits (110), Expect = 3e-16
Identities = 128/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358
|||| |||||||||| | |||||| |||| || | || |||| |||||||| |
Sbjct 191292 TGGCGACGACGTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGT 191233
Query 57359 CGCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGA 57418
| ||||| ||||| ||||| || | ||| ||||||||||| ||||||||||||
Sbjct 191232 CCTTGCCGTGCGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGA 191173
Query 57419 ACTCGTGAACGTGAAATCCGTGCAGGCCCCTCGGC-AGATTCATGATGTAGCCG 57471
||||||| | ||| || |||||| | ||| |||| ||| | ||| || ||||
Sbjct 191172 ACTCGTGGATGTGGAAGCCGTGCTTG-CCCGCGGCGAGACCCTTGAGGTCGCCG 191120
>seq8
Length=1276107
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| || ||||||||| || || || |
Sbjct 456132 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 456191
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| || || |
Sbjct 456192 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 456251
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||| ||||||| || | || || || || ||||| ||
Sbjct 456252 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 456311
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 456312 ACGAAGATCTGCAT 456325
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| || |||||||| || || || |
Sbjct 455448 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 455507
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| || || |
Sbjct 455508 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 455567
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||| ||||||| || | || || || || ||||| ||
Sbjct 455568 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 455627
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 455628 ACGAAGATCTGCAT 455641
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| || |||||||| || || || |
Sbjct 455676 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 455735
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| || || |
Sbjct 455736 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 455795
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||| ||||||| || | || || || || ||||| ||
Sbjct 455796 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 455855
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 455856 ACGAAGATCTGCAT 455869
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| || |||||||| || || || |
Sbjct 455904 GACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 455963
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| || || |
Sbjct 455964 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 456023
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||| ||||||| || | || || || || ||||| ||
Sbjct 456024 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 456083
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 456084 ACGAAGATCTGCAT 456097
>seq15
Length=739136
Score = 82.4 bits (90), Expect = 8e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||| | || | || | | | |||||||| || |||||||||||
Sbjct 297671 GCCGCCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 297730
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||||||| || || || | |||| || ||||| ||||| || ||
Sbjct 297731 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGG 297790
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | |||||||| |||||||||
Sbjct 297791 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCAC 297850
Query 138567 CTCGA 138571
|||||
Sbjct 297851 CTCGA 297855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262282137680
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