Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 1e-27
seq8 134 1e-26
seq4 104 2e-17
seq1 96.9 3e-15
seq10 95.1 1e-14
seq15 91.5 1e-13
>seq6
Length=1431126
Score = 138 bits (152), Expect = 1e-27
Identities = 304/448 (68%), Gaps = 7/448 (2%)
Strand=Plus/Minus
Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGC 47191
||||| || ||||||| ||||| | |||||||| |||||||||| ||| ||| |||
Sbjct 1273504 GCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC 1273445
Query 47192 GGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCT 47251
| || | | |||| | || | |||||||||||||| || |||||||||
Sbjct 1273444 TCC-ATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCT 1273386
Query 47252 AATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGT 47311
||| | ||||| ||||| ||| | ||||||| || ||| |||| || | |
Sbjct 1273385 CATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCG--TACA-T 1273329
Query 47312 CGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371
| | | ||| ||| | || |||||| | || | || || |||| || ||
Sbjct 1273328 CAACAAGAAGCCCAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGATCGA 1273269
Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431
|| ||||||| || ||| || || ||| | | || || ||||||||||| | ||
Sbjct 1273268 GAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCGGATCTCAT 1273209
Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTAT-CCCAAGA 47490
| |||||||||| || |||||||| | ||| |||| ||||| | || | |||
Sbjct 1273208 GTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCT-CGGCATGTCGAAGG 1273150
Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550
||| || | | || || ||||| | ||| | ||| || ||| |||| |||||||
Sbjct 1273149 AGTACAACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAAGACCA 1273090
Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| |||||||||||||| ||||| ||
Sbjct 1273089 ACTTCTTCGAGAAGCGCGTGGGCGAGTA 1273062
>seq8
Length=1276107
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 455415 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455474
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || |||||| |||||| |||||||| || || ||
Sbjct 455475 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455534
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||||||
Sbjct 455535 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCGAC 455593
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||| ||||| || || || ||||||||
Sbjct 455594 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 455643 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455702
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || |||||| |||||| |||||||| || || ||
Sbjct 455703 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455762
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||||||
Sbjct 455763 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCGAC 455821
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||| ||||| || || || ||||||||
Sbjct 455822 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455869
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 455871 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 455930
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || |||||| |||||| |||||||| || || ||
Sbjct 455931 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 455990
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||||||
Sbjct 455991 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCGAC 456049
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||| ||||| || || || ||||||||
Sbjct 456050 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456097
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 456099 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 456158
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| |||||| |||||||| || || ||
Sbjct 456159 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 456218
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||||||
Sbjct 456219 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCGAC 456277
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||| ||||| || || || ||||||||
Sbjct 456278 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 456325
>seq4
Length=1584431
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 22772 CCACCGCGGAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22713
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| |||||| |||||||| ||||| ||
Sbjct 22712 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 22653
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||| ||
Sbjct 22652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 22594
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|||| ||| | || || |||||
Sbjct 22593 CTCGAGGGTGATGGTCTTACCGGT 22570
>seq1
Length=2053059
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 146052 GATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTT 146111
|| ||| | |||||| || || |||||||||| ||| ||||| | || | |||
Sbjct 2015794 GAGGAGGTGCTGGTTCACGACGGTGAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTT 2015735
Query 146112 GCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGG 146171
| |||| |||||||||| |||||||||| || | ||||| | ||| | ||||| ||
Sbjct 2015734 GGAGGTGTACGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGG 2015675
Query 146172 CATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207
|||| ||||||||||| ||||| | ||||||||
Sbjct 2015674 CATGGGCGCCACCAGCAGGGAGTTGCGGACGCCGTG 2015639
>seq10
Length=1160640
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 50662 GTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCCAA 50721
|||||| || ||||| ||||||||| || || |||| |||||||||| |||
Sbjct 191282 GTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGTCCTTGCCGTG 191223
Query 50722 CGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCGTGCAC 50781
||| || ||||| |||| ||| ||||||||||| | ||||||||||| ||||| |
Sbjct 191222 CGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGAACTCGTGGAT 191163
Query 50782 GTGGAACCCGTG 50793
|||||| |||||
Sbjct 191162 GTGGAAGCCGTG 191151
>seq15
Length=739136
Score = 91.5 bits (100), Expect = 1e-13
Identities = 126/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | | ||||| || || ||||| || ||
Sbjct 297702 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 297761
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 297762 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 297821
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| |||| |||| |||||| | ||| || |||| ||| | || ||||||||
Sbjct 297822 ACGTTG-TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 297874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500687068560
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