Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq19 857 0.0
>seq19
Length=72585
Score = 857 bits (950), Expect = 0.0
Identities = 790/995 (79%), Gaps = 6/995 (1%)
Strand=Plus/Minus
Query 7538 GCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCA 7597
||||||||||| |||||||||||||| |||||||||||||| |||||||| || || |
Sbjct 11157 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGGTTA 11098
Query 7598 GCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACC--TTGACCATCAATGATGG 7655
|||||||| | | || ||||| ||||| | ||||| || |||| ||| | | |
Sbjct 11097 GCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGA--ATCTACTACAG 11040
Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715
|||||||||||||||| ||||| |||||||| ||||| || || ||| | ||| ||||
Sbjct 11039 ACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTGA 10980
Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775
||||||| || | |||||||| ||||||||||||||| || ||||| ||||||||||
Sbjct 10979 ACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTGA 10920
Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835
| ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| |
Sbjct 10919 ATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAAG 10860
Query 7836 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895
||||||||||||| |||||||| || || ||| ||||| |||||| || ||||
Sbjct 10859 TCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCTCAC 10800
Query 7896 GAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955
| | ||||| || ||||| || ||||| ||||| ||| ||| || |||||||| || |
Sbjct 10799 GGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGAATA 10740
Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015
||||||| || || ||||||||||| |||||||| |||||||||||||| || ||||| |
Sbjct 10739 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 10680
Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075
| | |||| ||||||| || ||||| || ||||||||||| | |||||||||||||| |
Sbjct 10679 CGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAACCCT 10620
Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135
|||||| || || |||| ||||||||| | |||||| || || ||||||||||| ||||
Sbjct 10619 GACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAGCTA 10560
Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195
|| ||||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||
Sbjct 10559 CAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGTATG 10500
Query 8196 CATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255
| | || ||||| | |||||| | | | || ||| |||||||||||||||| ||||
Sbjct 10499 AACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAAGCC 10440
Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315
|||||||||||||||||||||||||||| || |||||||| || || ||||||||||| |
Sbjct 10439 ACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAGATG 10380
Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375
||| | ||||||||||||||||||||||| || ||||| || || |||| || || |
Sbjct 10379 TAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTGGCT 10320
Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATA 8434
||||||| || || || || |||||||||||||| | || || |||||||| || | |
Sbjct 10319 CACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTGA-A 10261
Query 8435 GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTG 8494
| || | || | ||||| ||||| | || ||||||||||||| || ||||| ||
Sbjct 10260 GTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGTTC 10201
Query 8495 TTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCA 8529
| || || || | ||| ||| || || ||||
Sbjct 10200 TCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 10166
Score = 857 bits (950), Expect = 0.0
Identities = 790/995 (79%), Gaps = 6/995 (1%)
Strand=Plus/Plus
Query 7538 GCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCA 7597
||||||||||| |||||||||||||| |||||||||||||| |||||||| || || |
Sbjct 35986 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGGTTA 36045
Query 7598 GCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACC--TTGACCATCAATGATGG 7655
|||||||| | | || ||||| ||||| | ||||| || |||| ||| | | |
Sbjct 36046 GCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGA--ATCTACTACAG 36103
Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715
|||||||||||||||| ||||| |||||||| ||||| || || ||| | ||| ||||
Sbjct 36104 ACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTGA 36163
Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775
||||||| || | |||||||| ||||||||||||||| || ||||| ||||||||||
Sbjct 36164 ACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTGA 36223
Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835
| ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| |
Sbjct 36224 ATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAAG 36283
Query 7836 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895
||||||||||||| |||||||| || || ||| ||||| |||||| || ||||
Sbjct 36284 TCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCTCAC 36343
Query 7896 GAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955
| | ||||| || ||||| || ||||| ||||| ||| ||| || |||||||| || |
Sbjct 36344 GGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGAATA 36403
Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015
||||||| || || ||||||||||| |||||||| |||||||||||||| || ||||| |
Sbjct 36404 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 36463
Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075
| | |||| ||||||| || ||||| || ||||||||||| | |||||||||||||| |
Sbjct 36464 CGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAACCCT 36523
Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135
|||||| || || |||| ||||||||| | |||||| || || ||||||||||| ||||
Sbjct 36524 GACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAGCTA 36583
Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195
|| ||||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||
Sbjct 36584 CAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGTATG 36643
Query 8196 CATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255
| | || ||||| | |||||| | | | || ||| |||||||||||||||| ||||
Sbjct 36644 AACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAAGCC 36703
Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315
|||||||||||||||||||||||||||| || |||||||| || || ||||||||||| |
Sbjct 36704 ACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAGATG 36763
Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375
||| | ||||||||||||||||||||||| || ||||| || || |||| || || |
Sbjct 36764 TAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTGGCT 36823
Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATA 8434
||||||| || || || || |||||||||||||| | || || |||||||| || | |
Sbjct 36824 CACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTGA-A 36882
Query 8435 GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTG 8494
| || | || | ||||| ||||| | || ||||||||||||| || ||||| ||
Sbjct 36883 GTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGTTC 36942
Query 8495 TTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCA 8529
| || || || | ||| ||| || || ||||
Sbjct 36943 TCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 36977
Score = 616 bits (682), Expect = 2e-171
Identities = 750/1020 (74%), Gaps = 2/1020 (0%)
Strand=Plus/Minus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | ||| | ||| || ||||| ||||||| ||||||||| || |||||
Sbjct 3007 AGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGAGGCTGATCT 2948
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| ||||||||| ||||| | |||||| || | || || ||||| || ||||| ||
Sbjct 2947 TGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTAGTGTAGAATGTT 2888
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442
|| ||||| ||||| || ||||| | |||||||||||| || ||||| || || | |||
Sbjct 2887 TCAAACTCAGGATCTTCAGCTGCACGGATCTCTTGTGATACGAAGTCGTATGCACGGAGG 2828
Query 6443 TTAAGTGCAAGACCAATAATACCAA-TGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501
|||||||| | || | || ||||| |||| || |||| | || | ||||| || ||
Sbjct 2827 TTAAGTGCTAATCCTACAACACCAAGTGCT-GACATCCATAACCCTGTTACAGGTACGAA 2769
Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561
||||||||||| || ||||||||||| || ||| || | ||| || ||||| |||||
Sbjct 2768 AAGCATAAAGAAGTGAAGCCAACGCTTGTTAGAGAAAGCTACACCGAAAATCTGTGACCA 2709
Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621
|||||| || || || ||||| || || ||||| || |||| || || | ||| ||
Sbjct 2708 GAAACGGTTTGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGAGTTGGGTTAAATGCACG 2649
Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681
|||||| ||||| ||||||||||| || | || ||||||||||| || ||||||||
Sbjct 2648 GAAAGTGTTTGAACCATCACCATCTTCGAAAAGTGTGTTCTCTACAGTTGCTCCGTGAAT 2589
Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741
||||| || | |||| | || | | ||| ||||| |||||||| || || ||||| ||
Sbjct 2588 CGCACAAAGAAGTGCTGCTCCAAGTACACCAGCTACTCCCATCATGTGGAATGGGTTAAG 2529
Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801
|||||||||||||| || || | ||| || | ||| ||||| || | || ||||||||
Sbjct 2528 TGTCCAGTTGTGGAACCCTTGGAAGAAAAGAATGAAACGGAAAATTCCCGCTACACCAAA 2469
Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861
|| || ||||||||||| | || ||||| || || || || || || ||||| |||||
Sbjct 2468 TGAAGGTGCAAAGAACCATCCTGATTGTCCAAGTGGGTAAATAAGGAATACAGATACAAA 2409
Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921
||||| || || | || || || || || ||||| |||||||| ||| ||||||
Sbjct 2408 TACAGCGATAGGTGCTGAGAATGCAATCGCGTTGTACGGACGAATTTGTACTGCACGTGC 2349
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
|| ||||| || || ||||| || || || | | || || ||||| || || || ||
Sbjct 2348 AATTTCAAATTGACGGAGCATAAATCCGATTAATCCGAATGCACCGTGAAGTGCTACGAA 2289
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
| ||||| ||| ||||| || ||| || ||| || || || |||||||| |||||
Sbjct 2288 TGTCCATAATCCACCAAGCTGACACCAACGTGTGAACTCACCTTGTGCTTCTGGTCCCCA 2229
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|| ||||| || || || | | | || || || |||||||| || | ||||||||
Sbjct 2228 AAGGAGAAGAAGTGAGTGAGCCATACTGTTAGATGGTGTTGATACTGCCGATGTAAGGAA 2169
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
|||||||||||||| || ||| || | ||||| |||||||| || ||||| ||
Sbjct 2168 GTTACATCCCTCAAGGTATGAACTTGCTAAACCGTGTGTGTACCATGAAGTTACGAATGT 2109
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
||| || || | ||| || || | ||| | ||| ||| ||||| | | || |||||
Sbjct 2108 TGTTCCAGTAAACCATCCACCAACTGCAAAGTATGCACATGGGAATAATAAAATTCCTGA 2049
Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCC 7281
|||||| || || ||||| | |||||||||||||||||| || | |||||||| ||
Sbjct 2048 CCAACCTACGAATACGAAACGATCACGCTTAAGCCAGTCGTCTACGTTGTCAAACCATCC 1989
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/71 (89%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 27534 GGATTTGAACCAGTGTAGGCA-AGCCAGCGGATTTACAGTCCGCCCCCATTAACCACTCG 27592
Query 176193 GACACCTACCC 176203
| || | ||||
Sbjct 27593 GGCATCGACCC 27603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622124652245360
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