Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq19 857 0.0 >seq19 Length=72585 Score = 857 bits (950), Expect = 0.0 Identities = 790/995 (79%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 7538 GCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCA 7597 ||||||||||| |||||||||||||| |||||||||||||| |||||||| || || | Sbjct 11157 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGGTTA 11098 Query 7598 GCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACC--TTGACCATCAATGATGG 7655 |||||||| | | || ||||| ||||| | ||||| || |||| ||| | | | Sbjct 11097 GCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGA--ATCTACTACAG 11040 Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715 |||||||||||||||| ||||| |||||||| ||||| || || ||| | ||| |||| Sbjct 11039 ACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTGA 10980 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 ||||||| || | |||||||| ||||||||||||||| || ||||| |||||||||| Sbjct 10979 ACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTGA 10920 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835 | ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| | Sbjct 10919 ATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAAG 10860 Query 7836 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895 ||||||||||||| |||||||| || || ||| ||||| |||||| || |||| Sbjct 10859 TCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCTCAC 10800 Query 7896 GAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955 | | ||||| || ||||| || ||||| ||||| ||| ||| || |||||||| || | Sbjct 10799 GGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGAATA 10740 Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015 ||||||| || || ||||||||||| |||||||| |||||||||||||| || ||||| | Sbjct 10739 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 10680 Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075 | | |||| ||||||| || ||||| || ||||||||||| | |||||||||||||| | Sbjct 10679 CGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAACCCT 10620 Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135 |||||| || || |||| ||||||||| | |||||| || || ||||||||||| |||| Sbjct 10619 GACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAGCTA 10560 Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195 || ||||| |||||||| |||| |||| ||||||| |||||||||||||||||||||| Sbjct 10559 CAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGTATG 10500 Query 8196 CATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255 | | || ||||| | |||||| | | | || ||| |||||||||||||||| |||| Sbjct 10499 AACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAAGCC 10440 Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||| | Sbjct 10439 ACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAGATG 10380 Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375 ||| | ||||||||||||||||||||||| || ||||| || || |||| || || | Sbjct 10379 TAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTGGCT 10320 Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATA 8434 ||||||| || || || || |||||||||||||| | || || |||||||| || | | Sbjct 10319 CACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTGA-A 10261 Query 8435 GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTG 8494 | || | || | ||||| ||||| | || ||||||||||||| || ||||| || Sbjct 10260 GTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGTTC 10201 Query 8495 TTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCA 8529 | || || || | ||| ||| || || |||| Sbjct 10200 TCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 10166 Score = 857 bits (950), Expect = 0.0 Identities = 790/995 (79%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 7538 GCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCA 7597 ||||||||||| |||||||||||||| |||||||||||||| |||||||| || || | Sbjct 35986 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGGTTA 36045 Query 7598 GCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACC--TTGACCATCAATGATGG 7655 |||||||| | | || ||||| ||||| | ||||| || |||| ||| | | | Sbjct 36046 GCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGA--ATCTACTACAG 36103 Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715 |||||||||||||||| ||||| |||||||| ||||| || || ||| | ||| |||| Sbjct 36104 ACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTGA 36163 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 ||||||| || | |||||||| ||||||||||||||| || ||||| |||||||||| Sbjct 36164 ACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTGA 36223 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835 | ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| | Sbjct 36224 ATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAAG 36283 Query 7836 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895 ||||||||||||| |||||||| || || ||| ||||| |||||| || |||| Sbjct 36284 TCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCTCAC 36343 Query 7896 GAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955 | | ||||| || ||||| || ||||| ||||| ||| ||| || |||||||| || | Sbjct 36344 GGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGAATA 36403 Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015 ||||||| || || ||||||||||| |||||||| |||||||||||||| || ||||| | Sbjct 36404 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 36463 Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075 | | |||| ||||||| || ||||| || ||||||||||| | |||||||||||||| | Sbjct 36464 CGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAACCCT 36523 Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135 |||||| || || |||| ||||||||| | |||||| || || ||||||||||| |||| Sbjct 36524 GACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAGCTA 36583 Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195 || ||||| |||||||| |||| |||| ||||||| |||||||||||||||||||||| Sbjct 36584 CAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGTATG 36643 Query 8196 CATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255 | | || ||||| | |||||| | | | || ||| |||||||||||||||| |||| Sbjct 36644 AACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAAGCC 36703 Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||| | Sbjct 36704 ACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAGATG 36763 Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375 ||| | ||||||||||||||||||||||| || ||||| || || |||| || || | Sbjct 36764 TAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTGGCT 36823 Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATA 8434 ||||||| || || || || |||||||||||||| | || || |||||||| || | | Sbjct 36824 CACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTGA-A 36882 Query 8435 GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTG 8494 | || | || | ||||| ||||| | || ||||||||||||| || ||||| || Sbjct 36883 GTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGTTC 36942 Query 8495 TTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCA 8529 | || || || | ||| ||| || || |||| Sbjct 36943 TCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 36977 Score = 616 bits (682), Expect = 2e-171 Identities = 750/1020 (74%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | ||| || ||||| ||||||| ||||||||| || ||||| Sbjct 3007 AGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGAGGCTGATCT 2948 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | |||||| || | || || ||||| || ||||| || Sbjct 2947 TGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTAGTGTAGAATGTT 2888 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || ||||| ||||| || ||||| | |||||||||||| || ||||| || || | ||| Sbjct 2887 TCAAACTCAGGATCTTCAGCTGCACGGATCTCTTGTGATACGAAGTCGTATGCACGGAGG 2828 Query 6443 TTAAGTGCAAGACCAATAATACCAA-TGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||||||| | || | || ||||| |||| || |||| | || | ||||| || || Sbjct 2827 TTAAGTGCTAATCCTACAACACCAAGTGCT-GACATCCATAACCCTGTTACAGGTACGAA 2769 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 ||||||||||| || ||||||||||| || ||| || | ||| || ||||| ||||| Sbjct 2768 AAGCATAAAGAAGTGAAGCCAACGCTTGTTAGAGAAAGCTACACCGAAAATCTGTGACCA 2709 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||| || || || ||||| || || ||||| || |||| || || | ||| || Sbjct 2708 GAAACGGTTTGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGAGTTGGGTTAAATGCACG 2649 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 |||||| ||||| ||||||||||| || | || ||||||||||| || |||||||| Sbjct 2648 GAAAGTGTTTGAACCATCACCATCTTCGAAAAGTGTGTTCTCTACAGTTGCTCCGTGAAT 2589 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||||| || | |||| | || | | ||| ||||| |||||||| || || ||||| || Sbjct 2588 CGCACAAAGAAGTGCTGCTCCAAGTACACCAGCTACTCCCATCATGTGGAATGGGTTAAG 2529 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||||||||||| || || | ||| || | ||| ||||| || | || |||||||| Sbjct 2528 TGTCCAGTTGTGGAACCCTTGGAAGAAAAGAATGAAACGGAAAATTCCCGCTACACCAAA 2469 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || || ||||||||||| | || ||||| || || || || || || ||||| ||||| Sbjct 2468 TGAAGGTGCAAAGAACCATCCTGATTGTCCAAGTGGGTAAATAAGGAATACAGATACAAA 2409 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921 ||||| || || | || || || || || ||||| |||||||| ||| |||||| Sbjct 2408 TACAGCGATAGGTGCTGAGAATGCAATCGCGTTGTACGGACGAATTTGTACTGCACGTGC 2349 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 || ||||| || || ||||| || || || | | || || ||||| || || || || Sbjct 2348 AATTTCAAATTGACGGAGCATAAATCCGATTAATCCGAATGCACCGTGAAGTGCTACGAA 2289 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 | ||||| ||| ||||| || ||| || ||| || || || |||||||| ||||| Sbjct 2288 TGTCCATAATCCACCAAGCTGACACCAACGTGTGAACTCACCTTGTGCTTCTGGTCCCCA 2229 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || ||||| || || || | | | || || || |||||||| || | |||||||| Sbjct 2228 AAGGAGAAGAAGTGAGTGAGCCATACTGTTAGATGGTGTTGATACTGCCGATGTAAGGAA 2169 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 |||||||||||||| || ||| || | ||||| |||||||| || ||||| || Sbjct 2168 GTTACATCCCTCAAGGTATGAACTTGCTAAACCGTGTGTGTACCATGAAGTTACGAATGT 2109 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || || | ||| || || | ||| | ||| ||| ||||| | | || ||||| Sbjct 2108 TGTTCCAGTAAACCATCCACCAACTGCAAAGTATGCACATGGGAATAATAAAATTCCTGA 2049 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCC 7281 |||||| || || ||||| | |||||||||||||||||| || | |||||||| || Sbjct 2048 CCAACCTACGAATACGAAACGATCACGCTTAAGCCAGTCGTCTACGTTGTCAAACCATCC 1989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 27534 GGATTTGAACCAGTGTAGGCA-AGCCAGCGGATTTACAGTCCGCCCCCATTAACCACTCG 27592 Query 176193 GACACCTACCC 176203 | || | |||| Sbjct 27593 GGCATCGACCC 27603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124652245360