Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 167 4e-36 seq7 123 4e-23 seq6 107 3e-18 >seq1 Length=2053059 Score = 167 bits (184), Expect = 4e-36 Identities = 336/489 (69%), Gaps = 7/489 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || ||||||| | |||| |||| | |||| || || |||||||||||||| Sbjct 2016123 TCGACGGTGAACTTGACCGCGTCGGCGGCGGCCCTGGACCTGAGGTAGTACATGCCGGTT 2016064 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || |||||||||| |||| |||| | ||||| || | ||| || | ||||| |||| Sbjct 2016063 TTAAGGCCCTTCTTCCACGCGTAAAAGTGCAGCGACGTCAGCTTACCGCTGTTGGCGTCG 2016004 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | |||||| | ||| | ||||| ||||||||| |||||||| || || |||||||| Sbjct 2016003 GACATGTGCACGTTGAACGACTGCGACTGGTCGATG-AAGGCGCCGCGGTCGGCGGCCAT 2015945 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081 | | | | | |||| |||||||| ||||||||| | | || || | | |||| Sbjct 2015944 GTCCACGAGGATGCGCTGCTTGATCTCCCAGACCGTCTTGTAGATCTC-CTTGAG-GTTG 2015887 Query 204082 AGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTC 204141 | || ||| || | || |||||||||| ||| || || ||| | || | | Sbjct 2015886 TCGGGGAT-GTCCAGCGACTGGACGGAGCCGTTGTTGGCGATGAG-CTCGTTCTTGAGGC 2015829 Query 204142 -CTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 |||| | ||||| | | | || || | ||||| |||| | || | Sbjct 2015828 TGGGGTCCCAGAGGCCCATCTCGGTGAGGTCGGAGAGGAGGTGCTGGTTCACGACGGTGA 2015769 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | || ||||| ||||| | |||| | | | |||| |||| | || ||||| ||||| Sbjct 2015768 ACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGTGTACGGCTCGAAGCACTCGT 2015709 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 ||||||| |||||||| | ||| || ||||||||||| |||| ||||||||||||| Sbjct 2015708 TGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGGCGCCACCAGCAGGGAGTTGC 2015649 Query 204321 GCACACCGT 204329 | || |||| Sbjct 2015648 GGACGCCGT 2015640 Score = 114 bits (126), Expect = 2e-20 Identities = 282/425 (66%), Gaps = 2/425 (0%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| ||||| ||| || ||||||||||||| ||||| || | ||| | | || Sbjct 2014813 CTTCATGAACAGATCGTTGGTCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTC 2014754 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| ||||| | || | ||||| |||||||||||||| | Sbjct 2014753 CTTGCCGTGGTTCTTGCGGAGGTCGAGCCA-GTCGAAGATGTCCGCGTGCCACGGCTCGA 2014695 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||||| ||||||| || |||||||| || | | | Sbjct 2014694 GGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGT 2014635 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| || || || ||||| || | | ||||||| ||| ||||| |||| | |||| Sbjct 2014634 CGTTAAAGACGCGAAGCATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGT 2014575 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 || || | | || | ||||| | || || ||||| | |||||| || Sbjct 2014574 AGGAAGAGGTGGCGCGGATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGA 2014515 Query 205464 TCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 | |||||||| | || || ||||||||| |||||||||| ||| || | | Sbjct 2014514 TGCACGCGCACTCCTTGAGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGA 2014455 Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583 || | ||||| | ||||| || | ||| |||| || ||||||||||||| | Sbjct 2014454 TGAGGAAACACGACGACAGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACG 2014395 Query 205584 CGTGG 205588 ||||| Sbjct 2014394 CGTGG 2014390 >seq7 Length=1394110 Score = 123 bits (136), Expect = 4e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||||| ||||||| ||||||||| | | Sbjct 900455 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAG 900396 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAA-GCACCGCT 160035 |||| || |||||| ||| ||| |||||||| || || | ||||||| | ||| Sbjct 900395 GTGAGCCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATTG-CGCAAAACGATCCGGA 900337 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || ||||| ||||||||| ||| |||||||| || | ||| Sbjct 900336 GAAGAAGATGCCCTCCACGCACGCGAACGCCACCAGTCGCTC 900295 >seq6 Length=1431126 Score = 107 bits (118), Expect = 3e-18 Identities = 180/256 (70%), Gaps = 11/256 (4%) Strand=Plus/Plus Query 159814 GGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA 159873 ||||||||| || | | |||||||||||| |||||||| || || | || |||||| Sbjct 1273241 GGGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCT 1273300 Query 159874 GAC-ACGT--TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAA 159930 ||| ||| |||| | |||| || || | | |||||||||||||| Sbjct 1273301 GACGACGGACTCGTTGGGCTTCTTGT------TGATGTACGAGTAGAGGAGGCACGCAAA 1273354 Query 159931 GTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCAT 159990 ||||| ||| || |||||||| || ||||| ||||||||| | | ||||||| ||||| Sbjct 1273355 GTCGCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 1273414 Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCT 160049 || || ||| || ||||| | |||| ||| ||| | ||| || ||||| |||| Sbjct 1273415 GAGGCCGCGCTTCTTCAGCCAGTAGATGG-AGCAGAAGGAGCCGGAGAAGAAGATGCCCT 1273473 Query 160050 CCACGGCCGCAAACGC 160065 | | | ||| ||||| Sbjct 1273474 CGATGCACGCGAACGC 1273489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155011150640