Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1 167 4e-36
seq7 123 4e-23
seq6 107 3e-18
>seq1
Length=2053059
Score = 167 bits (184), Expect = 4e-36
Identities = 336/489 (69%), Gaps = 7/489 (1%)
Strand=Plus/Minus
Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902
|| || ||||||| | |||| |||| | |||| || || ||||||||||||||
Sbjct 2016123 TCGACGGTGAACTTGACCGCGTCGGCGGCGGCCCTGGACCTGAGGTAGTACATGCCGGTT 2016064
Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962
|| |||||||||| |||| |||| | ||||| || | ||| || | ||||| ||||
Sbjct 2016063 TTAAGGCCCTTCTTCCACGCGTAAAAGTGCAGCGACGTCAGCTTACCGCTGTTGGCGTCG 2016004
Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021
| |||||| | ||| | ||||| ||||||||| |||||||| || || ||||||||
Sbjct 2016003 GACATGTGCACGTTGAACGACTGCGACTGGTCGATG-AAGGCGCCGCGGTCGGCGGCCAT 2015945
Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081
| | | | | |||| |||||||| ||||||||| | | || || | | ||||
Sbjct 2015944 GTCCACGAGGATGCGCTGCTTGATCTCCCAGACCGTCTTGTAGATCTC-CTTGAG-GTTG 2015887
Query 204082 AGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTC 204141
| || ||| || | || |||||||||| ||| || || ||| | || | |
Sbjct 2015886 TCGGGGAT-GTCCAGCGACTGGACGGAGCCGTTGTTGGCGATGAG-CTCGTTCTTGAGGC 2015829
Query 204142 -CTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200
|||| | ||||| | | | || || | ||||| |||| | || |
Sbjct 2015828 TGGGGTCCCAGAGGCCCATCTCGGTGAGGTCGGAGAGGAGGTGCTGGTTCACGACGGTGA 2015769
Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260
| || ||||| ||||| | |||| | | | |||| |||| | || ||||| |||||
Sbjct 2015768 ACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGTGTACGGCTCGAAGCACTCGT 2015709
Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320
||||||| |||||||| | ||| || ||||||||||| |||| |||||||||||||
Sbjct 2015708 TGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGGCGCCACCAGCAGGGAGTTGC 2015649
Query 204321 GCACACCGT 204329
| || ||||
Sbjct 2015648 GGACGCCGT 2015640
Score = 114 bits (126), Expect = 2e-20
Identities = 282/425 (66%), Gaps = 2/425 (0%)
Strand=Plus/Minus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| ||||| ||| || ||||||||||||| ||||| || | ||| | | ||
Sbjct 2014813 CTTCATGAACAGATCGTTGGTCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTC 2014754
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283
| || ||||||| | ||| ||||| | || | ||||| |||||||||||||| |
Sbjct 2014753 CTTGCCGTGGTTCTTGCGGAGGTCGAGCCA-GTCGAAGATGTCCGCGTGCCACGGCTCGA 2014695
Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343
| | ||| | ||||||| ||||||| || |||||||| || | | |
Sbjct 2014694 GGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGT 2014635
Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403
|||| || || || ||||| || | | ||||||| ||| ||||| |||| | ||||
Sbjct 2014634 CGTTAAAGACGCGAAGCATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGT 2014575
Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463
|| || | | || | ||||| | || || ||||| | |||||| ||
Sbjct 2014574 AGGAAGAGGTGGCGCGGATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGA 2014515
Query 205464 TCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523
| |||||||| | || || ||||||||| |||||||||| ||| || | |
Sbjct 2014514 TGCACGCGCACTCCTTGAGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGA 2014455
Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583
|| | ||||| | ||||| || | ||| |||| || ||||||||||||| |
Sbjct 2014454 TGAGGAAACACGACGACAGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACG 2014395
Query 205584 CGTGG 205588
|||||
Sbjct 2014394 CGTGG 2014390
>seq7
Length=1394110
Score = 123 bits (136), Expect = 4e-23
Identities = 126/162 (78%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976
|||||||| || ||||||||||| || |||||||||| ||||||| ||||||||| | |
Sbjct 900455 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAG 900396
Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAA-GCACCGCT 160035
|||| || |||||| ||| ||| |||||||| || || | ||||||| | |||
Sbjct 900395 GTGAGCCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATTG-CGCAAAACGATCCGGA 900337
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077
|| ||||| ||||||||| ||| |||||||| || | |||
Sbjct 900336 GAAGAAGATGCCCTCCACGCACGCGAACGCCACCAGTCGCTC 900295
>seq6
Length=1431126
Score = 107 bits (118), Expect = 3e-18
Identities = 180/256 (70%), Gaps = 11/256 (4%)
Strand=Plus/Plus
Query 159814 GGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA 159873
||||||||| || | | |||||||||||| |||||||| || || | || ||||||
Sbjct 1273241 GGGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCT 1273300
Query 159874 GAC-ACGT--TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAA 159930
||| ||| |||| | |||| || || | | ||||||||||||||
Sbjct 1273301 GACGACGGACTCGTTGGGCTTCTTGT------TGATGTACGAGTAGAGGAGGCACGCAAA 1273354
Query 159931 GTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCAT 159990
||||| ||| || |||||||| || ||||| ||||||||| | | ||||||| |||||
Sbjct 1273355 GTCGCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 1273414
Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCT 160049
|| || ||| || ||||| | |||| ||| ||| | ||| || ||||| ||||
Sbjct 1273415 GAGGCCGCGCTTCTTCAGCCAGTAGATGG-AGCAGAAGGAGCCGGAGAAGAAGATGCCCT 1273473
Query 160050 CCACGGCCGCAAACGC 160065
| | | ||| |||||
Sbjct 1273474 CGATGCACGCGAACGC 1273489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795155011150640
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