Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq8 138 1e-27
seq15 131 2e-25
seq4 118 1e-21
>seq8
Length=1276107
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | |||||||| |||| |||||||||||||| |||||
Sbjct 456134 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 456193
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 456194 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 456252
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || || || || |
Sbjct 456253 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 456312
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 456313 CGAAGATCTGCAT 456325
Score = 134 bits (148), Expect = 2e-26
Identities = 173/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418
|||| ||||| || | | || | ||| || || | || |||||| ||||| ||||
Sbjct 455407 ATTAGTTGCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 455466
Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478
|||| | |||||||| | || |||||||||||||| ||||| |||| |||||||||||
Sbjct 455467 AGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 455526
Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTC 46537
| | || | || |||||||||| |||||| ||||| ||| | | | ||||||
Sbjct 455527 CAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAA 455585
Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || | |||||||| ||||| || || || || || ||||| |||||
Sbjct 455586 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 455641
Score = 134 bits (148), Expect = 2e-26
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | |||||||| | || |||||||||||||| |||||
Sbjct 455678 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455737
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 455738 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 455796
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || || || || |
Sbjct 455797 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 455856
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 455857 CGAAGATCTGCAT 455869
Score = 134 bits (148), Expect = 2e-26
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | |||||||| | || |||||||||||||| |||||
Sbjct 455906 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 455965
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 455966 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 456024
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || || || || |
Sbjct 456025 TGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 456084
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 456085 CGAAGATCTGCAT 456097
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | |||||||| |||| |||||||||||||| |||||
Sbjct 456362 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 456421
Query 46462 TATCAAGCGCTGCTGGTC 46479
|||| ||||||||||||
Sbjct 456422 GATCAGGCGCTGCTGGTC 456439
>seq15
Length=739136
Score = 131 bits (144), Expect = 2e-25
Identities = 132/169 (78%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | |||||||| |||| |||||||||||||| |||||
Sbjct 297707 CTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 297766
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 297767 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 297825
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| ||| ||||| || | |||||||| ||||| ||
Sbjct 297826 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 297874
>seq4
Length=1584431
Score = 118 bits (130), Expect = 1e-21
Identities = 129/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | || ||||| | || |||||||||||||| |||||
Sbjct 22737 CTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 22678
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 22677 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22619
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| || ||||| || | |||||||| || || ||
Sbjct 22618 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 22570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238265755880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |