Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq7 215 5e-51
seq6 174 2e-38
seq8 134 1e-26
seq15 125 7e-24
seq4 120 3e-22
seq10 113 5e-20
>seq7
Length=1394110
Score = 215 bits (238), Expect = 5e-51
Identities = 396/562 (70%), Gaps = 19/562 (3%)
Strand=Plus/Minus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| || |||||||| || | ||||||||||||||| ||||| |||||| ||| || |
Sbjct 900450 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAG 900391
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA-AAGA 133012
||| ||||||| ||||| || |||||||| || || ||| | |||| ||| | ||||
Sbjct 900390 CCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATTGCG-CAAAACGATCCGGAGAAGA 900332
Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG-CTG 133071
||| |||||| ||| |||||| |||||||| |||||| |||| || | | |||
Sbjct 900331 AGATGCCCTCCACGCACGCGAACGCCACCAGTCGCTCGGCGAAACA--CTCCGAGGACTG 900274
Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA-TGGC 133130
| ||||| || ||||| | ||||| || |||| |||| || ||||
Sbjct 900273 G--ATCCACTTGAGGGCCCACTGCGCCTTGCGCGCCACCGTGGGCA-CGTTGTGAATGGC 900217
Query 133131 GTTCAACAAACGGAGTTTCT-CTTC-CGAGGAACGC-ACGTAGGTGTCGATGAGGGTCGA 133187
| |||| || | ||| |||| || | | ||||||||||||||||| |
Sbjct 900216 CCTGAACA---GGTGCCTCTTCTTCACGCTGTCCTTGACGTAGGTGTCGATGAGCAACCC 900160
Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247
||| | |||||||| | |||||| ||||||| ||||| |||| || ||| |||||
Sbjct 900159 GTACGTCTCCGAGTGGATGTTCTCGATGGCGAGCTGAAACGCGTAGAACGCCCGAGCCTC 900100
Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307
|| ||| || || | ||| || | | || || ||| ||||| |||||
Sbjct 900099 CGGCAGCTGGACGTCCTTCATGAACCGGAGGCCTAGGTTCTCGAGCACGATCCCGTCAGA 900040
Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CT 133366
|| ||||| || || || |||||| |||||| || |||||||||||||| |||| |
Sbjct 900039 CGCCGCGAAGAACGCGAGGACGTGCGAGATGAAGTGCTGCTCGTTGTCGTTC-AGCGTCA 899981
Query 133367 CCCAGTCGCGCGT-GTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425
||||||| | || |||| |||| ||||| | |||||| || |||| || ||||||||
Sbjct 899980 CCCAGTC-CTTGTAGTCCATGGAGAGGTCGATCTCCTCCGCGCTCCAGAATGACGCCTCC 899922
Query 133426 GCTTTTTTGTACATACTCCACA 133447
|| | |||||||| ||||||
Sbjct 899921 GCCTGCTTGTACATCTTCCACA 899900
>seq6
Length=1431126
Score = 174 bits (192), Expect = 2e-38
Identities = 325/473 (69%), Gaps = 16/473 (3%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||||||||| || || || |||||||| ||||| || || || || || ||||
Sbjct 1273043 CATCACGCCGCTCTTCTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTG 1273102
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
| ||| |||||| ||| | || || |||||||||| |||||| | ||| | ||||
Sbjct 1273103 GAGGGAGATGAGCTCCATCCAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCC 1273162
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766
|| | || ||| ||| | ||||| |||||||||||||| | |||||| | | |||
Sbjct 1273163 GAGCTGGCCGAGGAGGTGA---TCGGCGACGAACTCGATGTACTCGGACATGAGATCCGC 1273219
Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
| | | | | | |||| || ||||| ||| || ||| | |||||| |||
Sbjct 1273220 GTTCATGCCGACGAGGGCGCAGGGG-AGCGCGTCGCAGACAAACTCCTTCTCGATCTCGA 1273278
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCC----GTTGCACCAAATGC 132882
| || || ||||||| | ||| ||| | | || | ||| |||| | | |
Sbjct 1273279 CAGCCTCCTTGACGATCTGCCTGACGACGGACTCGTTGGGCTTCTTGTTG----ATGTAC 1273334
Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942
| | | | ||| |||||||||| || | ||||||||| | | ||||| ||||||
Sbjct 1273335 GAGTAGAGGAGGCACGCAAAGTCGCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTG 1273394
Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002
||| || | |||||||||||||||||| || || ||||| | |||| | ||| |
Sbjct 1273395 GAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAG 1273454
Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055
|| || ||||||| |||||||| | |||||| || | |||||||||| ||||
Sbjct 1273455 CCGGAGAAGAAGATGCCCTCGATGCACGCGAACGCGATCAGGCGCTCGGCGAA 1273507
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|| || ||| | ||||| ||||| ||||| | ||||||||| ||||| || |||| |||
Sbjct 1414277 GGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGC 1414336
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA 38434
|||||| |||||||||||||| |||||
Sbjct 1414337 ACCCTCGCGGACTACAACATCCAGAAGGA 1414365
>seq8
Length=1276107
Score = 134 bits (148), Expect = 1e-26
Identities = 161/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 456265 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 456207
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||
Sbjct 456206 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAA 456147
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 456146 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 456111
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 455581 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455523
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 455522 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455463
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 455462 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 455427
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 455809 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455751
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 455750 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455691
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 455690 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 455655
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 456037 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455979
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 455978 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455919
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 455918 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 455883
>seq15
Length=739136
Score = 125 bits (138), Expect = 7e-24
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| || ||| | |||||| | | | |||| | ||
Sbjct 297876 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACG-TCAAG 297818
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
| || |||| ||||| ||||| || ||| | ||||| ||||| || || | |||||||
Sbjct 297817 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGC 297758
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| ||||| ||| |||||||||||||| ||||| | || ||
Sbjct 297757 AAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 297698
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|| | ||||| ||| | | |||||||
Sbjct 297697 CACCTCGTGCTCCGTCTCCGCGGCGGCC 297670
>seq4
Length=1584431
Score = 120 bits (132), Expect = 3e-22
Identities = 145/195 (74%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| || || ||||||||| |||| || ||| | |||||| | | | |||| | ||
Sbjct 22568 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAG 22626
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
| || |||| ||||| ||||| || ||| ||||||| ||||| || || | |||||||
Sbjct 22627 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGC 22686
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || || | ||||||||| |||||||||||||| ||||| | || ||
Sbjct 22687 AAGCAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 22746
Query 38445 CATTTGGTGCTGCGT 38459
|| | ||||| |||
Sbjct 22747 CACCTCGTGCTCCGT 22761
>seq10
Length=1160640
Score = 113 bits (124), Expect = 5e-20
Identities = 118/151 (78%), Gaps = 7/151 (5%)
Strand=Plus/Minus
Query 107666 GAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTT 107725
|| |||||| |||||||| |||| | | ||||| || ||| ||||||||||| |||
Sbjct 191285 GACGTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGTC---CTT 191229
Query 107726 --CGT-CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTC 107782
||| ||||||||| || |||| ||| ||||||||||| | | ||||||||||||
Sbjct 191228 GCCGTGCGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGAACTC 191169
Query 107783 GTGCACGTGGAAGCCGTGCAGGCCGCGCGGC 107813
||| | ||||||||||||| ||| ||||||
Sbjct 191168 GTGGATGTGGAAGCCGTGCTTGCC-CGCGGC 191139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172681208960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |