Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 215 5e-51 seq6 174 2e-38 seq8 134 1e-26 seq15 125 7e-24 seq4 120 3e-22 seq10 113 5e-20 >seq7 Length=1394110 Score = 215 bits (238), Expect = 5e-51 Identities = 396/562 (70%), Gaps = 19/562 (3%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || |||||||| || | ||||||||||||||| ||||| |||||| ||| || | Sbjct 900450 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAG 900391 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA-AAGA 133012 ||| ||||||| ||||| || |||||||| || || ||| | |||| ||| | |||| Sbjct 900390 CCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATTGCG-CAAAACGATCCGGAGAAGA 900332 Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG-CTG 133071 ||| |||||| ||| |||||| |||||||| |||||| |||| || | | ||| Sbjct 900331 AGATGCCCTCCACGCACGCGAACGCCACCAGTCGCTCGGCGAAACA--CTCCGAGGACTG 900274 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA-TGGC 133130 | ||||| || ||||| | ||||| || |||| |||| || |||| Sbjct 900273 G--ATCCACTTGAGGGCCCACTGCGCCTTGCGCGCCACCGTGGGCA-CGTTGTGAATGGC 900217 Query 133131 GTTCAACAAACGGAGTTTCT-CTTC-CGAGGAACGC-ACGTAGGTGTCGATGAGGGTCGA 133187 | |||| || | ||| |||| || | | ||||||||||||||||| | Sbjct 900216 CCTGAACA---GGTGCCTCTTCTTCACGCTGTCCTTGACGTAGGTGTCGATGAGCAACCC 900160 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 ||| | |||||||| | |||||| ||||||| ||||| |||| || ||| ||||| Sbjct 900159 GTACGTCTCCGAGTGGATGTTCTCGATGGCGAGCTGAAACGCGTAGAACGCCCGAGCCTC 900100 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 || ||| || || | ||| || | | || || ||| ||||| ||||| Sbjct 900099 CGGCAGCTGGACGTCCTTCATGAACCGGAGGCCTAGGTTCTCGAGCACGATCCCGTCAGA 900040 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CT 133366 || ||||| || || || |||||| |||||| || |||||||||||||| |||| | Sbjct 900039 CGCCGCGAAGAACGCGAGGACGTGCGAGATGAAGTGCTGCTCGTTGTCGTTC-AGCGTCA 899981 Query 133367 CCCAGTCGCGCGT-GTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||| | || |||| |||| ||||| | |||||| || |||| || |||||||| Sbjct 899980 CCCAGTC-CTTGTAGTCCATGGAGAGGTCGATCTCCTCCGCGCTCCAGAATGACGCCTCC 899922 Query 133426 GCTTTTTTGTACATACTCCACA 133447 || | |||||||| |||||| Sbjct 899921 GCCTGCTTGTACATCTTCCACA 899900 >seq6 Length=1431126 Score = 174 bits (192), Expect = 2e-38 Identities = 325/473 (69%), Gaps = 16/473 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || |||||||| ||||| || || || || || |||| Sbjct 1273043 CATCACGCCGCTCTTCTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTG 1273102 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 | ||| |||||| ||| | || || |||||||||| |||||| | ||| | |||| Sbjct 1273103 GAGGGAGATGAGCTCCATCCAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCC 1273162 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || | || ||| ||| | ||||| |||||||||||||| | |||||| | | ||| Sbjct 1273163 GAGCTGGCCGAGGAGGTGA---TCGGCGACGAACTCGATGTACTCGGACATGAGATCCGC 1273219 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | | | | | | |||| || ||||| ||| || ||| | |||||| ||| Sbjct 1273220 GTTCATGCCGACGAGGGCGCAGGGG-AGCGCGTCGCAGACAAACTCCTTCTCGATCTCGA 1273278 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCC----GTTGCACCAAATGC 132882 | || || ||||||| | ||| ||| | | || | ||| |||| | | | Sbjct 1273279 CAGCCTCCTTGACGATCTGCCTGACGACGGACTCGTTGGGCTTCTTGTTG----ATGTAC 1273334 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 | | | | ||| |||||||||| || | ||||||||| | | ||||| |||||| Sbjct 1273335 GAGTAGAGGAGGCACGCAAAGTCGCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTG 1273394 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| || | |||||||||||||||||| || || ||||| | |||| | ||| | Sbjct 1273395 GAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAG 1273454 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || || ||||||| |||||||| | |||||| || | |||||||||| |||| Sbjct 1273455 CCGGAGAAGAAGATGCCCTCGATGCACGCGAACGCGATCAGGCGCTCGGCGAA 1273507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| ||||| | ||||||||| ||||| || |||| ||| Sbjct 1414277 GGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGC 1414336 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA 38434 |||||| |||||||||||||| ||||| Sbjct 1414337 ACCCTCGCGGACTACAACATCCAGAAGGA 1414365 >seq8 Length=1276107 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 456325 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456266 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 456265 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 456207 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 456206 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAA 456147 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 456146 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 456111 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 455641 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455582 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 455581 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455523 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 455522 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455463 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 455462 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 455427 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 455869 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 455810 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 455809 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455751 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 455750 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455691 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 455690 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 455655 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 456097 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 456038 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 456037 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 455979 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 455978 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAA 455919 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 455918 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 455883 >seq15 Length=739136 Score = 125 bits (138), Expect = 7e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| || ||| | |||||| | | | |||| | || Sbjct 297876 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACG-TCAAG 297818 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| ||||| || ||| | ||||| ||||| || || | ||||||| Sbjct 297817 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGC 297758 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| ||||| ||| |||||||||||||| ||||| | || || Sbjct 297757 AAGCAGCTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 297698 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || | ||||| ||| | | ||||||| Sbjct 297697 CACCTCGTGCTCCGTCTCCGCGGCGGCC 297670 >seq4 Length=1584431 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| || || ||||||||| |||| || ||| | |||||| | | | |||| | || Sbjct 22568 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAG 22626 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| ||||| || ||| ||||||| ||||| || || | ||||||| Sbjct 22627 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGC 22686 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | ||||||||| |||||||||||||| ||||| | || || Sbjct 22687 AAGCAGCTCGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTC 22746 Query 38445 CATTTGGTGCTGCGT 38459 || | ||||| ||| Sbjct 22747 CACCTCGTGCTCCGT 22761 >seq10 Length=1160640 Score = 113 bits (124), Expect = 5e-20 Identities = 118/151 (78%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 107666 GAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTT 107725 || |||||| |||||||| |||| | | ||||| || ||| ||||||||||| ||| Sbjct 191285 GACGTTGCCGAGGTCGCCCGCGTGGCGGTTCTCGTCGGTGGGGGCGCCGTGGTC---CTT 191229 Query 107726 --CGT-CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTC 107782 ||| ||||||||| || |||| ||| ||||||||||| | | |||||||||||| Sbjct 191228 GCCGTGCGGGTTGAAGTGGGGTCCGGTGGACATGCAGCCGTTGGTGGTGTCGCCGAACTC 191169 Query 107783 GTGCACGTGGAAGCCGTGCAGGCCGCGCGGC 107813 ||| | ||||||||||||| ||| |||||| Sbjct 191168 GTGGATGTGGAAGCCGTGCTTGCC-CGCGGC 191139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172681208960