Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 1e-28
>seq1
Length=2053059
Score = 143 bits (158), Expect = 1e-28
Identities = 385/583 (66%), Gaps = 8/583 (1%)
Strand=Plus/Plus
Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951
|| ||||||||||| ||||| || || || || |||||||||||| |||||| | |
Sbjct 532515 ATCGATGAAATTGTCCTTGTCGGCGGGTCAACTCGAATTCCTAAAGTTCAAGCGCTACTA 532574
Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011
||||||| || ||| ||| | ||| | || || || || ||||| ||||||
Sbjct 532575 AGAGAATATTTTGACGGTAAAGAACCAAACAAGGGAGTCAACCCCGACGAAGCAGTTGCA 532634
Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071
||||| || || || |||| || || || | || || || || || | |||
Sbjct 532635 TATGGCGCAGCTGTGCAAGGAGGAATCCTCTCTGGGGAAGGTGGAGATGAAACAAAAGAC 532694
Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131
|| || | | ||||| | || || ||| ||| | ||||| | || ||| | |||
Sbjct 532695 ATCTTGCTTCTTGATGTTGCTCCCCTCACTCAGGGAATCGAAACCGTCGGAGGAGTTATG 532754
Query 452132 ACTAATTTAATTAAACGAGGAACT-TCT-ATTCCTTGTAAAAAGAGTCAAACATTTAGTA 452189
|| || | ||| | |||||| | | || || ||||| || ||||||| |
Sbjct 532755 ACAAAGCTGATTC--CTAGGAACACTGTGATCCCGACCAAAAAATCACAGACATTTACCA 532812
Query 452190 C--AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247
| | |||| | || |||| ||| | ||||||||||| || || || || || ||
Sbjct 532813 CTTACCAAG--ACAATCAACAGACTGTGATGATTCAAGTGTTCGAGGGGGAGCGAGCCAT 532870
Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAG 452307
||| ||| ||| || ||| ||| | || || | |||||| ||| || |
Sbjct 532871 GACGAAAGACAATCATCTACTCGGAAAGTTCGAGCTCACGTCCATTCCCCCTGCTCCGCG 532930
Query 452308 GGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAG 452367
|| ||||||||| || | || | ||| |||| |||||||| || | ||||| |
Sbjct 532931 CGGTGTTCCTCAAATCGAGGTAACTTTTGAAATTGACGCAAATGGCATATTGAATGTCGG 532990
Query 452368 TGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCG 452427
||| | || || | | || |||||||| ||||| || || || ||||||||| |||
Sbjct 532991 TGCTGAAGACAAGGGAACAGGGAAATCAGAGAAAATCACCATCACAAATGATAAAGGCCG 533050
Query 452428 TTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAA 452470
| ||| ||||||| || || | ||||| || ||||| |||
Sbjct 533051 GCTTTCTCAAGAAGAGATAGAGAGGATGGTCGAAGAAGCTGAA 533093
Score = 120 bits (132), Expect = 1e-21
Identities = 179/254 (70%), Gaps = 9/254 (4%)
Strand=Plus/Plus
Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399
|| ||||||||||| || || ||||||| || |||||||| || || |||||||
Sbjct 531902 GCATATTTCAATGACGCCCAGAGGCAAGCCACAAAAGATGCCGGTACCATCTCTGGTTTG 531961
Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459
||||| |||||||| ||||| || ||||||||||| | |||||||| || ||| |
Sbjct 531962 AATGTCGCGCGAATTATCAATGAGCCAACAGCAGCTGCAATTGCATATGG-CTTGGACA- 532019
Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519
||| || ||||| ||||| | || |||||| |||| || ||||| ||
Sbjct 532020 -------AAAAAGGCGAAAAGAATATACTCGTTTTTGATCTTGGAGGTGGAACATTCGAC 532072
Query 451520 ACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACT 451579
|| |||| | || || | || || |||||||| |||| ||||| || |||
Sbjct 532073 GTATCCATACTGACTATAGACAACGGTGTTTTTGAAGTCGTATCAACAAATGGAGACACT 532132
Query 451580 CATCTAGGAGGTGA 451593
||||| ||||||||
Sbjct 532133 CATCTCGGAGGTGA 532146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975717919036052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |