Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 143 1e-28 >seq1 Length=2053059 Score = 143 bits (158), Expect = 1e-28 Identities = 385/583 (66%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 || ||||||||||| ||||| || || || || |||||||||||| |||||| | | Sbjct 532515 ATCGATGAAATTGTCCTTGTCGGCGGGTCAACTCGAATTCCTAAAGTTCAAGCGCTACTA 532574 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 ||||||| || ||| ||| | ||| | || || || || ||||| |||||| Sbjct 532575 AGAGAATATTTTGACGGTAAAGAACCAAACAAGGGAGTCAACCCCGACGAAGCAGTTGCA 532634 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071 ||||| || || || |||| || || || | || || || || || | ||| Sbjct 532635 TATGGCGCAGCTGTGCAAGGAGGAATCCTCTCTGGGGAAGGTGGAGATGAAACAAAAGAC 532694 Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131 || || | | ||||| | || || ||| ||| | ||||| | || ||| | ||| Sbjct 532695 ATCTTGCTTCTTGATGTTGCTCCCCTCACTCAGGGAATCGAAACCGTCGGAGGAGTTATG 532754 Query 452132 ACTAATTTAATTAAACGAGGAACT-TCT-ATTCCTTGTAAAAAGAGTCAAACATTTAGTA 452189 || || | ||| | |||||| | | || || ||||| || ||||||| | Sbjct 532755 ACAAAGCTGATTC--CTAGGAACACTGTGATCCCGACCAAAAAATCACAGACATTTACCA 532812 Query 452190 C--AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247 | | |||| | || |||| ||| | ||||||||||| || || || || || || Sbjct 532813 CTTACCAAG--ACAATCAACAGACTGTGATGATTCAAGTGTTCGAGGGGGAGCGAGCCAT 532870 Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAG 452307 ||| ||| ||| || ||| ||| | || || | |||||| ||| || | Sbjct 532871 GACGAAAGACAATCATCTACTCGGAAAGTTCGAGCTCACGTCCATTCCCCCTGCTCCGCG 532930 Query 452308 GGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAG 452367 || ||||||||| || | || | ||| |||| |||||||| || | ||||| | Sbjct 532931 CGGTGTTCCTCAAATCGAGGTAACTTTTGAAATTGACGCAAATGGCATATTGAATGTCGG 532990 Query 452368 TGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCG 452427 ||| | || || | | || |||||||| ||||| || || || ||||||||| ||| Sbjct 532991 TGCTGAAGACAAGGGAACAGGGAAATCAGAGAAAATCACCATCACAAATGATAAAGGCCG 533050 Query 452428 TTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAA 452470 | ||| ||||||| || || | ||||| || ||||| ||| Sbjct 533051 GCTTTCTCAAGAAGAGATAGAGAGGATGGTCGAAGAAGCTGAA 533093 Score = 120 bits (132), Expect = 1e-21 Identities = 179/254 (70%), Gaps = 9/254 (4%) Strand=Plus/Plus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || ||||||||||| || || ||||||| || |||||||| || || ||||||| Sbjct 531902 GCATATTTCAATGACGCCCAGAGGCAAGCCACAAAAGATGCCGGTACCATCTCTGGTTTG 531961 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| |||||||| ||||| || ||||||||||| | |||||||| || ||| | Sbjct 531962 AATGTCGCGCGAATTATCAATGAGCCAACAGCAGCTGCAATTGCATATGG-CTTGGACA- 532019 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519 ||| || ||||| ||||| | || |||||| |||| || ||||| || Sbjct 532020 -------AAAAAGGCGAAAAGAATATACTCGTTTTTGATCTTGGAGGTGGAACATTCGAC 532072 Query 451520 ACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACT 451579 || |||| | || || | || || |||||||| |||| ||||| || ||| Sbjct 532073 GTATCCATACTGACTATAGACAACGGTGTTTTTGAAGTCGTATCAACAAATGGAGACACT 532132 Query 451580 CATCTAGGAGGTGA 451593 ||||| |||||||| Sbjct 532133 CATCTCGGAGGTGA 532146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717919036052