Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-21 >seq1 Length=2053059 Score = 120 bits (132), Expect = 2e-21 Identities = 413/639 (65%), Gaps = 14/639 (2%) Strand=Plus/Minus Query 517152 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 517211 |||| |||| ||||||| | ||| ||||| || | |||| ||| | | || || Sbjct 533100 CAAACTCTTCAGCTTCTTCGACCATCCTCTCTATCTCTTCTTGAGAAAGCCGGCCTTTAT 533041 Query 517212 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 517271 ||| || || || || |||| ||||| |||| || || | ||| ||||| | Sbjct 533040 CATTTGTGATGGTGATTTTCTCTGATTTCCCTGTTCCCTTGTCTTCAGCACCGACATTCA 532981 Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 517331 || ||||| || || | ||||| || || || |||||||| || || | | |||||| Sbjct 532980 ATATGCCATTTGCGTCAATTTCAAAAGTTACCTCGATTTGAGGAACACCGCGCGGAGCAG 532921 Query 517332 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391 | || || | | || |||| || || ||| ||||| || | ||| | Sbjct 532920 GGGGAATGGACGTGAGCTCGAACTTTCCGAGTAGATGATTGTCTTTCGTCATGGCTCGCT 532861 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGT---TTGATTATCTGAATAAGTTGTAAATA 517448 | |||||||| | ||| || | || ||| |||||| ||| ||||| |||||| Sbjct 532860 CCCCCTCGAACACTTGAATCATCAC---AGTCTGTTGATTGTCTTGGTAAGTGGTAAATG 532804 Query 517449 CTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507 |||| |||||||| || || ||||| ||| ||| | || ||||||| || Sbjct 532803 -TCTGTGATTTTTTGGTCGGGATCACAGTGTTCCTAGGAATCAGCTTTGTCATAACTCCT 532745 Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567 || | ||||| | || ||| || |||| ||||||| || | || | || | Sbjct 532744 CCGACGGTTTCGATTCCCTGAGTGAGGGGAGCAACATCAAGAAGCAAGATGTCTTT---T 532688 Query 517568 TTTTCATC---AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 ||||||| | || ||| || || || |||| | ||| || ||||||||||| Sbjct 532687 GTTTCATCTCCACCTTCCCCAGAGAGGATTCCTCCTTGCACAGCTGCGCCATATGCAACT 532628 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 ||||| || || || || | ||| ||| |||||| | ||| | | | || || Sbjct 532627 GCTTCGTCGGGGTTGACTCCCTTGTTTGGTTCTTTACCGTCAAAATATTCTCTTAGTAGC 532568 Query 517685 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 | || |||||||| |||| ||| || || || | |||||||||| | |||||| Sbjct 532567 GCTTGAACTTTAGGAATTCGAGTTGACCCGCCGACAAGGACAATTTCATCGATCTGTGAC 532508 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGT 517783 || | || | || |||| | |||||| |||||| Sbjct 532507 TTTTTCATTCCTGCATCCTCCATGGCTTTTTTGACGGGT 532469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821457157414