Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 430 2e-115 seq1 145 1e-29 seq13 136 5e-27 >seq5 Length=1518631 Score = 430 bits (476), Expect = 2e-115 Identities = 981/1476 (66%), Gaps = 9/1476 (1%) Strand=Plus/Plus Query 6523 GTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTT 6582 |||||| ||||| || ||||| ||||||||||| ||| || || || || ||| | || Sbjct 1290393 GTAGTTCTCGAGCCCGTTCTTGGCCTCGACCTTCTTCTTGTGCTCCTCGTCCTCAGCCTT 1290452 Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 ||||| || || || |||||||| ||||| || || || || | | ||||| || Sbjct 1290453 GTACTTCTCAGCCTCCTGGACCATGCGCTCAATCTCCTCCTTGGAGAGGCGGCCCTTGTC 1290512 Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702 || || || || ||||| | | || | || ||| || || || || || | Sbjct 1290513 GTTGGTGATGGTGATCTTGTTCTTCTGGCCGGTGGACTTGTCCTCGGCGGAGACGTTGAG 1290572 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 ||||| || || |||| ||||| | || || || || || || | || |||| Sbjct 1290573 GATACCGTTGGCGTCAATGTCGAAGCACACGTTGATCTGGGGCACGCCGCGGGGCGCGGG 1290632 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 || || || | | || || | || || | |||| ||| | | | | || || Sbjct 1290633 GGGGATGCCGGAGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCTTGGTCCTGGAGCGCTC 1290692 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882 || || |||| | || ||| | || || || || || ||||||| || Sbjct 1290693 GCCCTCGAAGACCTGGATAAGCACACCGGGCTGGTTGTCGGAGTAAGTGGAGAAGACCTG 1290752 Query 6883 TTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCAT 6942 || ||||| | || || || || || | || || | | ||||| | || || | Sbjct 1290753 CTCCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCACAGTCATCACGCCGCCGAC 1290812 Query 6943 AGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC 7002 ||| ||||| || | ||||| || | ||||| | ||| | || || ||||| || Sbjct 1290813 AGTCTCGAGACCCATGGACAGGGGGGAGACGTCGAGGAGGAGGAGATCCTGAACCTTCTC 1290872 Query 7003 GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 ||| || || || | | |||||| || ||||| | || ||||| ||||| ||||| || Sbjct 1290873 GTTGCCCTCGCCGGAGAGGATGGCAGCCTGGACGGCGGCGCCGTAGGCGACAGCCTCGTC 1290932 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122 |||||| || | || || || || ||||| || | || || | | || | Sbjct 1290933 GGGGTTGATGGACTTGCAGAGCTCCTTGCCGTTGAAGAAGTCGGAGAGAAGGGACTGCAC 1290992 Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182 || ||||| || || || |||||||| | || || || | || || || || || Sbjct 1290993 CTTGGGGATACGGGTGGAACCACCGACGAGGACAATCTCGTGGACGGCGGACTTGTCAAT 1291052 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242 ||| ||||| || || || ||||| || ||||| || || ||||| | |||||| Sbjct 1291053 CTTGGAGTCGCGGAGGCACTTCTCGACGGGCTCCATGCACTTGCGGAAGAGGTCCATGTT 1291112 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 || ||||| || | || ||||| ||||| || ||||| ||||| || ||| | | || Sbjct 1291113 GAGCTCCTCGAACCTGGCGCGGGTGATGGAGGTGTAGAAGTCAACACCCTCGAAGAGGGA 1291172 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||| || || |||| || || || || || || | || ||||| |||||||| || | Sbjct 1291173 ATCGATCTCGATGGAGGTCTGCGCGGTGGAGGAGAGGGTGCGCTTGGCGCGCTCGCAGGA 1291232 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | || || ||||| || | ||| |||| || || ||||| || || || || Sbjct 1291233 GGTGCGGAGGCGGCGGAGGGCGCGGGCGTTGCCGGTGATGTCCTTCTTGTGCTTGCGCTT 1291292 Query 7423 AAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 ||||| | |||||| | ||| | | ||||| || || || || | ||| || Sbjct 1291293 GAACTCCTGGACGAAGTGGTTCATGAGGCGCTGGTCGAAGTCCTCGCCTCCGAGGTGGGT 1291352 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || ||||| || || || || ||||| || | |||||| | | | || ||||| Sbjct 1291353 GTCACCTGCGGTGGCCTTCACCTCGAAGATGCCCTCCTCAATGGTGAGGAGGGACACATC 1291412 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTT------CGTATCGTCGTCTTTGT- 7595 || || || || || ||||| || ||||| ||||| || || ||| | || Sbjct 1291413 GAAGGTGCCGCCGCCGAGGTCGAAGATGAGCACGTTGCGCTCCGCGCCGCCGTTCTGGTC 1291472 Query 7596 --TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 |||| ||||| ||||||||||| |||||||| || || || || || || || | || Sbjct 1291473 CTTCTTGTCGAGGCCGTACGCGATCGCCGCCGCGGTGGGCTCGTTGATGATGCGCATGCA 1291532 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| | ||| || || || ||||| || ||||| || || || || ||||| ||||| Sbjct 1291533 GTTGATGCCCGCGATGACGGCGGCATCCTTGGTCGCCTGGCGCTGGGAGTCGTTGAAGTA 1291592 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| ||||| || ||||| |||| | ||| | ||| ||||| |||| || || || || Sbjct 1291593 GGCGGGGACGGTGACGACGGCGTTCTTGATCTCCTTGCCGAGGTACGCCTCGGCAATCTC 1291652 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 ||||| ||| || | ||| || || ||||| || || | |||| ||| || || Sbjct 1291653 CTTCATCTTGACGAGGATCATGGAGGAGATCTCCTCGGCGGAGAACTTCTTCTCCTCGCC 1291712 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 || || || || | |||||||| || ||||| | ||| | || | || ||||| Sbjct 1291713 GTGGAACTCGACCTGGATCATGGGCTTCTCCGCCTCGCCGCACACCACGGTGTAGGACCA 1291772 Query 7894 ATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGC 7953 || || || || | |||| ||| ||||||| ||||| | || || | ||||| || Sbjct 1291773 GTCCTTGATGTCAGCCTGGATCTGGGGGTCCGAGAACTTGCGGCCAATCATGCGCTTGGC 1291832 Query 7954 ATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 || || || ||||| ||||||||||| || || || Sbjct 1291833 GTCGAACACGGTGTTCTTGGGGTTCATCGCGGTCTG 1291868 >seq1 Length=2053059 Score = 145 bits (160), Expect = 1e-29 Identities = 429/656 (65%), Gaps = 8/656 (1%) Strand=Plus/Minus Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644 ||| ||| || |||| ||||||| | || || ||||||| || | | || ||||||| Sbjct 533097 ACTCTTCAGCTTCTTCGACCATCCTCTCTATCTCTTCTTGAGAAAGCCGGCCTTTATCAT 533038 Query 6645 TCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAA 6704 | || || || || || || ||||| || | |||| |||||||||| |||||||| | Sbjct 533037 TTGTGATGGTGATTTTCTCTGATTTCCCTGTTCCCTTGTCTTCAGCACCGACATTCAATA 532978 Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 | |||||||| |||| || || |||| | ||||| || ||| | ||| || | | Sbjct 532977 TGCCATTTGCGTCAATTTCAAAAGTTACCTCGATTTGAGGAACACCGCGCGGAGCAGGGG 532918 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 |||| ||| | || || | || |||| | || || ||| | | || || | Sbjct 532917 GAATGGACGTGAGCTCGAACTTTCCGAGTAGATGATTGTCTTTCGTCATGGCTCGCTCCC 532858 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTT 6884 | || | |||| ||| |||| | ||||||| ||||| || | || | ||| Sbjct 532857 CCTCGAACACTTGAATCATCACAGTCTGTTGATTGTCTTGGTAAGTGGTAAATGTCTGTG 532798 Query 6885 CTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAG 6944 ||| || | || ||| || || || ||||| | | ||||||| || || | | Sbjct 532797 ATTTTTTGGTCGGGATCACAGTGTTCCTAGGAATCAGCTTTGTCATAACTCCTCCGACGG 532738 Query 6945 TTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGT 7004 |||||| ||| ||| || || | || || | || || | ||||| | ||| | Sbjct 532737 TTTCGATTCCCTGAGTGAGGGGAGCAACATCAAGAAGCAAGATGTCTTTT---GTTTCAT 532681 Query 7005 -TCC--CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 ||| |||| || | | ||| | |||| || | || || ||||| || || || | Sbjct 532680 CTCCACCTTCCCCAGAGAGGATTCCTCCTTGCACAGCTGCGCCATATGCAACTGCTTCGT 532621 Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAA 7121 ||||||| | || || |||||||||||| |||||| || || | ||||| Sbjct 532620 CGGGGTTGACTCCCTTGTTTGGTTCTTTACCGTCAAAATATTCTCTTAGTAGCGCTTGAA 532561 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA-CTTTCGATTTATCG 7180 ||| || ||||| || || || ||||| | || ||||||| | || | ||| || Sbjct 532560 CTTTAGGAATTCGAGTTGACCCGCCGACAAGGACAATTTCATCGATCTGTGACTTTTTCA 532501 Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTC 7236 || | | ||| | | | ||||| ||| ||| |||| ||| ||||||| ||| Sbjct 532500 TTCCTGCATCCTCCATG-GCTTTTTTGACGGGTCCCATCGTTTTCCGGAACAGGTC 532446 Score = 102 bits (112), Expect = 1e-16 Identities = 282/426 (66%), Gaps = 11/426 (3%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATC--TGGAATCCACATGGCTGAAAAGAGGTCTC-GACAC 105615 || ||||| |||||||||| ||| ||| |||||| | | | || ||||| | | ||| Sbjct 2014821 TCGACGCGCTTCATGAACAGATCGTTGG--TCCACAGGCCGTAGAACAGGTCCCTGGCAC 2014764 Query 105616 CTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGC 105675 |||||| || | || || ||| || | ||||| | |||| || || |||||| Sbjct 2014763 G-CGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAGTCGAAGATGTCCGCGTGC 2014705 Query 105676 CATGGTTCTAAATAGACTGCAATAGACCCTTTAC----GACGCCCCGCTTGATTGACATA 105731 || || || | |||| || | | ||||| | | |||| | || | | ||| || Sbjct 2014704 CACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCCGCCCTGG-TCGACGTA 2014646 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 || ||||| |||| | || || | ||| || || || || | ||| ||||| || || Sbjct 2014645 CCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCGTTGGAGGTTCCGTTGGT 2014586 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 || || || | || | || || | ||||| | | | || || || || || Sbjct 2014585 GCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGACAGACCGATGCCGCCGGC 2014526 Query 105852 CCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC 105911 |||| ||| | ||| ||||| || | |||||||| || || ||||| ||| || Sbjct 2014525 GGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATGCCCTCGATGGAATCCTC 2014466 Query 105912 CTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 ||| | || || ||||||||||| |||| || || | ||| ||||| | ||||| || Sbjct 2014465 CTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGGGTACCCGAGTTGAAGAG 2014406 Query 105972 AGTTGG 105977 || || Sbjct 2014405 CGTGGG 2014400 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 ||||||| || || || ||||| || |||||||| ||| | | || ||| | | | Sbjct 531540 ACTTTCTGCCAATCAGGCGCTTGGCGTCAAAAACCGTGCGTGTTGGATTCGCAGTGGCCT 531481 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 | ||||| || || || ||||| |||||||| | |||| ||||| |||||||| | Sbjct 531480 GATTCTTAGCAGCATCGCCGATGAGACGTTCGCCGT---CCGTGAACGCAACGTACGAAG 531424 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 |||| | || ||||||||||| || ||||| || || || | | || |||| | Sbjct 531423 GGGTAATACGGTTCCCTTGGTCATTAGCAATGATCTCGACCTTGCCATTGACGTAGACAC 531364 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || ||||| || || | || ||||| || Sbjct 531363 CAACGCATGAGTACGTCGTGCCGAGGTCGATACCAAT 531327 >seq13 Length=1011177 Score = 136 bits (150), Expect = 5e-27 Identities = 269/398 (68%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || ||||| || || || ||||||||||| || || | | | || || |||| Sbjct 859806 TTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGATGAG 859865 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 | || || || ||||| || || || || | || || || |||||| || ||||| Sbjct 859866 GACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTGGGCC 859925 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 || || || | || || |||| |||| || ||||| || || | ||||||||| Sbjct 859926 GTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAACCAC 859985 Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683 || || || | || ||||| | |||||||| || || || || || | || || || Sbjct 859986 GAGTCCCCCCGCCGCGGTGAGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGGCGAAC 860045 Query 22684 ATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGG 22743 |||| || || || || | || | ||||| || ||| | || || || || || ||| Sbjct 860046 ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCGCGACTGG 860105 Query 22744 GGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAA 22803 || || || ||||| ||||| | || ||||||| || | || || || || || || Sbjct 860106 GGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAAGCCCGAG 860165 Query 22804 GATTTTGTTATTGCAACAGGCGTAACAACAACCGTGAG 22841 || ||||| | || || |||| || | |||||||| Sbjct 860166 GACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAG 860203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132649155960