Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq5 430 2e-115
seq1 145 1e-29
seq13 136 5e-27
>seq5
Length=1518631
Score = 430 bits (476), Expect = 2e-115
Identities = 981/1476 (66%), Gaps = 9/1476 (1%)
Strand=Plus/Plus
Query 6523 GTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTT 6582
|||||| ||||| || ||||| ||||||||||| ||| || || || || ||| | ||
Sbjct 1290393 GTAGTTCTCGAGCCCGTTCTTGGCCTCGACCTTCTTCTTGTGCTCCTCGTCCTCAGCCTT 1290452
Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642
||||| || || || |||||||| ||||| || || || || | | ||||| ||
Sbjct 1290453 GTACTTCTCAGCCTCCTGGACCATGCGCTCAATCTCCTCCTTGGAGAGGCGGCCCTTGTC 1290512
Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702
|| || || || ||||| | | || | || ||| || || || || || |
Sbjct 1290513 GTTGGTGATGGTGATCTTGTTCTTCTGGCCGGTGGACTTGTCCTCGGCGGAGACGTTGAG 1290572
Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762
||||| || || |||| ||||| | || || || || || || | || ||||
Sbjct 1290573 GATACCGTTGGCGTCAATGTCGAAGCACACGTTGATCTGGGGCACGCCGCGGGGCGCGGG 1290632
Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822
|| || || | | || || | || || | |||| ||| | | | | || ||
Sbjct 1290633 GGGGATGCCGGAGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCTTGGTCCTGGAGCGCTC 1290692
Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882
|| || |||| | || ||| | || || || || || ||||||| ||
Sbjct 1290693 GCCCTCGAAGACCTGGATAAGCACACCGGGCTGGTTGTCGGAGTAAGTGGAGAAGACCTG 1290752
Query 6883 TTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCAT 6942
|| ||||| | || || || || || | || || | | ||||| | || || |
Sbjct 1290753 CTCCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCACAGTCATCACGCCGCCGAC 1290812
Query 6943 AGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC 7002
||| ||||| || | ||||| || | ||||| | ||| | || || ||||| ||
Sbjct 1290813 AGTCTCGAGACCCATGGACAGGGGGGAGACGTCGAGGAGGAGGAGATCCTGAACCTTCTC 1290872
Query 7003 GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062
||| || || || | | |||||| || ||||| | || ||||| ||||| ||||| ||
Sbjct 1290873 GTTGCCCTCGCCGGAGAGGATGGCAGCCTGGACGGCGGCGCCGTAGGCGACAGCCTCGTC 1290932
Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122
|||||| || | || || || || ||||| || | || || | | || |
Sbjct 1290933 GGGGTTGATGGACTTGCAGAGCTCCTTGCCGTTGAAGAAGTCGGAGAGAAGGGACTGCAC 1290992
Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182
|| ||||| || || || |||||||| | || || || | || || || || ||
Sbjct 1290993 CTTGGGGATACGGGTGGAACCACCGACGAGGACAATCTCGTGGACGGCGGACTTGTCAAT 1291052
Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242
||| ||||| || || || ||||| || ||||| || || ||||| | ||||||
Sbjct 1291053 CTTGGAGTCGCGGAGGCACTTCTCGACGGGCTCCATGCACTTGCGGAAGAGGTCCATGTT 1291112
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302
|| ||||| || | || ||||| ||||| || ||||| ||||| || ||| | | ||
Sbjct 1291113 GAGCTCCTCGAACCTGGCGCGGGTGATGGAGGTGTAGAAGTCAACACCCTCGAAGAGGGA 1291172
Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362
||| || || |||| || || || || || || | || ||||| |||||||| || |
Sbjct 1291173 ATCGATCTCGATGGAGGTCTGCGCGGTGGAGGAGAGGGTGCGCTTGGCGCGCTCGCAGGA 1291232
Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422
|| || | || || ||||| || | ||| |||| || || ||||| || || || ||
Sbjct 1291233 GGTGCGGAGGCGGCGGAGGGCGCGGGCGTTGCCGGTGATGTCCTTCTTGTGCTTGCGCTT 1291292
Query 7423 AAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482
||||| | |||||| | ||| | | ||||| || || || || | ||| ||
Sbjct 1291293 GAACTCCTGGACGAAGTGGTTCATGAGGCGCTGGTCGAAGTCCTCGCCTCCGAGGTGGGT 1291352
Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542
|| || ||||| || || || || ||||| || | |||||| | | | || |||||
Sbjct 1291353 GTCACCTGCGGTGGCCTTCACCTCGAAGATGCCCTCCTCAATGGTGAGGAGGGACACATC 1291412
Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTT------CGTATCGTCGTCTTTGT- 7595
|| || || || || ||||| || ||||| ||||| || || ||| | ||
Sbjct 1291413 GAAGGTGCCGCCGCCGAGGTCGAAGATGAGCACGTTGCGCTCCGCGCCGCCGTTCTGGTC 1291472
Query 7596 --TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653
|||| ||||| ||||||||||| |||||||| || || || || || || || | ||
Sbjct 1291473 CTTCTTGTCGAGGCCGTACGCGATCGCCGCCGCGGTGGGCTCGTTGATGATGCGCATGCA 1291532
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
||| | ||| || || || ||||| || ||||| || || || || ||||| |||||
Sbjct 1291533 GTTGATGCCCGCGATGACGGCGGCATCCTTGGTCGCCTGGCGCTGGGAGTCGTTGAAGTA 1291592
Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773
||| ||||| || ||||| |||| | ||| | ||| ||||| |||| || || || ||
Sbjct 1291593 GGCGGGGACGGTGACGACGGCGTTCTTGATCTCCTTGCCGAGGTACGCCTCGGCAATCTC 1291652
Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833
||||| ||| || | ||| || || ||||| || || | |||| ||| || ||
Sbjct 1291653 CTTCATCTTGACGAGGATCATGGAGGAGATCTCCTCGGCGGAGAACTTCTTCTCCTCGCC 1291712
Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893
|| || || || | |||||||| || ||||| | ||| | || | || |||||
Sbjct 1291713 GTGGAACTCGACCTGGATCATGGGCTTCTCCGCCTCGCCGCACACCACGGTGTAGGACCA 1291772
Query 7894 ATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGC 7953
|| || || || | |||| ||| ||||||| ||||| | || || | ||||| ||
Sbjct 1291773 GTCCTTGATGTCAGCCTGGATCTGGGGGTCCGAGAACTTGCGGCCAATCATGCGCTTGGC 1291832
Query 7954 ATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989
|| || || ||||| ||||||||||| || || ||
Sbjct 1291833 GTCGAACACGGTGTTCTTGGGGTTCATCGCGGTCTG 1291868
>seq1
Length=2053059
Score = 145 bits (160), Expect = 1e-29
Identities = 429/656 (65%), Gaps = 8/656 (1%)
Strand=Plus/Minus
Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644
||| ||| || |||| ||||||| | || || ||||||| || | | || |||||||
Sbjct 533097 ACTCTTCAGCTTCTTCGACCATCCTCTCTATCTCTTCTTGAGAAAGCCGGCCTTTATCAT 533038
Query 6645 TCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAA 6704
| || || || || || || ||||| || | |||| |||||||||| |||||||| |
Sbjct 533037 TTGTGATGGTGATTTTCTCTGATTTCCCTGTTCCCTTGTCTTCAGCACCGACATTCAATA 532978
Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764
| |||||||| |||| || || |||| | ||||| || ||| | ||| || | |
Sbjct 532977 TGCCATTTGCGTCAATTTCAAAAGTTACCTCGATTTGAGGAACACCGCGCGGAGCAGGGG 532918
Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824
|||| ||| | || || | || |||| | || || ||| | | || || |
Sbjct 532917 GAATGGACGTGAGCTCGAACTTTCCGAGTAGATGATTGTCTTTCGTCATGGCTCGCTCCC 532858
Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTT 6884
| || | |||| ||| |||| | ||||||| ||||| || | || | |||
Sbjct 532857 CCTCGAACACTTGAATCATCACAGTCTGTTGATTGTCTTGGTAAGTGGTAAATGTCTGTG 532798
Query 6885 CTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAG 6944
||| || | || ||| || || || ||||| | | ||||||| || || | |
Sbjct 532797 ATTTTTTGGTCGGGATCACAGTGTTCCTAGGAATCAGCTTTGTCATAACTCCTCCGACGG 532738
Query 6945 TTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGT 7004
|||||| ||| ||| || || | || || | || || | ||||| | ||| |
Sbjct 532737 TTTCGATTCCCTGAGTGAGGGGAGCAACATCAAGAAGCAAGATGTCTTTT---GTTTCAT 532681
Query 7005 -TCC--CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061
||| |||| || | | ||| | |||| || | || || ||||| || || || |
Sbjct 532680 CTCCACCTTCCCCAGAGAGGATTCCTCCTTGCACAGCTGCGCCATATGCAACTGCTTCGT 532621
Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAA 7121
||||||| | || || |||||||||||| |||||| || || | |||||
Sbjct 532620 CGGGGTTGACTCCCTTGTTTGGTTCTTTACCGTCAAAATATTCTCTTAGTAGCGCTTGAA 532561
Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA-CTTTCGATTTATCG 7180
||| || ||||| || || || ||||| | || ||||||| | || | ||| ||
Sbjct 532560 CTTTAGGAATTCGAGTTGACCCGCCGACAAGGACAATTTCATCGATCTGTGACTTTTTCA 532501
Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTC 7236
|| | | ||| | | | ||||| ||| ||| |||| ||| ||||||| |||
Sbjct 532500 TTCCTGCATCCTCCATG-GCTTTTTTGACGGGTCCCATCGTTTTCCGGAACAGGTC 532446
Score = 102 bits (112), Expect = 1e-16
Identities = 282/426 (66%), Gaps = 11/426 (3%)
Strand=Plus/Minus
Query 105559 TCAACGCGTTTCATGAACAAATC--TGGAATCCACATGGCTGAAAAGAGGTCTC-GACAC 105615
|| ||||| |||||||||| ||| ||| |||||| | | | || ||||| | | |||
Sbjct 2014821 TCGACGCGCTTCATGAACAGATCGTTGG--TCCACAGGCCGTAGAACAGGTCCCTGGCAC 2014764
Query 105616 CTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGC 105675
|||||| || | || || ||| || | ||||| | |||| || || ||||||
Sbjct 2014763 G-CGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAGTCGAAGATGTCCGCGTGC 2014705
Query 105676 CATGGTTCTAAATAGACTGCAATAGACCCTTTAC----GACGCCCCGCTTGATTGACATA 105731
|| || || | |||| || | | ||||| | | |||| | || | | ||| ||
Sbjct 2014704 CACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCGCCGCCCTGG-TCGACGTA 2014646
Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791
|| ||||| |||| | || || | ||| || || || || | ||| ||||| || ||
Sbjct 2014645 CCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCGTTGGAGGTTCCGTTGGT 2014586
Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851
|| || || | || | || || | ||||| | | | || || || || ||
Sbjct 2014585 GCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGACAGACCGATGCCGCCGGC 2014526
Query 105852 CCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC 105911
|||| ||| | ||| ||||| || | |||||||| || || ||||| ||| ||
Sbjct 2014525 GGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATGCCCTCGATGGAATCCTC 2014466
Query 105912 CTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
||| | || || ||||||||||| |||| || || | ||| ||||| | ||||| ||
Sbjct 2014465 CTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGGGTACCCGAGTTGAAGAG 2014406
Query 105972 AGTTGG 105977
|| ||
Sbjct 2014405 CGTGGG 2014400
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/217 (70%), Gaps = 3/217 (1%)
Strand=Plus/Minus
Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988
||||||| || || || ||||| || |||||||| ||| | | || ||| | | |
Sbjct 531540 ACTTTCTGCCAATCAGGCGCTTGGCGTCAAAAACCGTGCGTGTTGGATTCGCAGTGGCCT 531481
Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048
| ||||| || || || ||||| |||||||| | |||| ||||| |||||||| |
Sbjct 531480 GATTCTTAGCAGCATCGCCGATGAGACGTTCGCCGT---CCGTGAACGCAACGTACGAAG 531424
Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108
|||| | || ||||||||||| || ||||| || || || | | || |||| |
Sbjct 531423 GGGTAATACGGTTCCCTTGGTCATTAGCAATGATCTCGACCTTGCCATTGACGTAGACAC 531364
Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145
| ||||| || ||||| || || | || ||||| ||
Sbjct 531363 CAACGCATGAGTACGTCGTGCCGAGGTCGATACCAAT 531327
>seq13
Length=1011177
Score = 136 bits (150), Expect = 5e-27
Identities = 269/398 (68%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503
|| || ||||| || || || ||||||||||| || || | | | || || ||||
Sbjct 859806 TTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGATGAG 859865
Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563
| || || || ||||| || || || || | || || || |||||| || |||||
Sbjct 859866 GACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTGGGCC 859925
Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623
|| || || | || || |||| |||| || ||||| || || | |||||||||
Sbjct 859926 GTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAACCAC 859985
Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683
|| || || | || ||||| | |||||||| || || || || || | || || ||
Sbjct 859986 GAGTCCCCCCGCCGCGGTGAGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGGCGAAC 860045
Query 22684 ATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGG 22743
|||| || || || || | || | ||||| || ||| | || || || || || |||
Sbjct 860046 ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCGCGACTGG 860105
Query 22744 GGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAA 22803
|| || || ||||| ||||| | || ||||||| || | || || || || || ||
Sbjct 860106 GGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAAGCCCGAG 860165
Query 22804 GATTTTGTTATTGCAACAGGCGTAACAACAACCGTGAG 22841
|| ||||| | || || |||| || | ||||||||
Sbjct 860166 GACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAG 860203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132649155960
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