Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1 197 2e-45
seq6 134 2e-26
seq7 131 2e-25
seq14 102 1e-16
seq13 100 4e-16
>seq1
Length=2053059
Score = 197 bits (218), Expect = 2e-45
Identities = 573/874 (66%), Gaps = 36/874 (4%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| || || ||||||| ||||| ||||| ||||| ||| | | || |
Sbjct 2014294 CCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCACAAGGATG---TGGAGAAGGC 2014350
Query 111671 TTTGGAGACATACGACAAGATGTCC---CGTGGTATGTTCATCCACGCAACACCAACCCT 111727
| || || ||| ||| | | ||| || | ||| | |||||| | || || ||
Sbjct 2014351 CATCGACACCTACCACATGCTCTCCGAGCGCTGGATG---ACCCACGCGTCCCCCACGCT 2014407
Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
||||||| | ||||| || | ||||| |||| |||||||| || || | |||||
Sbjct 2014408 CTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTCCTCATCGCCATGAAGGA 2014467
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
|||||| ||| | ||||| |||| || |||| || || || ||||| |||| ||
Sbjct 2014468 GGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCGTGCATCTCCAAGTCCGC 2014527
Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907
|| || ||||| || |||||| || || | |||| | || || | || ||
Sbjct 2014528 CGGCGGCATCGGTCTGTCCATCCACGACATCCGCGCCACCTCTTCCTACATCCGCGGCAC 2014587
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| || || | || || || || ||||||||||| ||||||| ||| ||| | ||
Sbjct 2014588 CAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTTAACGACACCGCGAGGTA 2014647
Query 111968 TGTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020
|| |||| ||||| || |||| || | |||| |||| || ||||| |
Sbjct 2014648 CGTCGACCA----GGGCGGCGGCAAGAGGAAAGGCGCATTCGCCATCTACCTCGAGCCGT 2014703
Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080
|||||||||| ||| | || | || || | || ||||| || | ||||||||||
Sbjct 2014704 GGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGCGC 2014763
Query 112081 GGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCA--GATCTCTTCATGAAGAGAGTTG 112137
||||| | || || |||| || || |||| ||| ||||| ||||||||| | || |
Sbjct 2014764 -GTGCCAGGGACCTGTTCTACGGCCTGTGGA--CCAACGATCTGTTCATGAAGCGCGTCG 2014820
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
||| | ||| | ||| | ||||| || || || | || || |||||| | ||| |
Sbjct 2014821 AGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCTCGCGGATTGCT 2014880
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257
||| |||||||| || || || ||| ||||||||||| || | || | ||
Sbjct 2014881 GGGGCGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGGAGGGCAAGGGTAAGAAGA 2014940
Query 112258 CGGT-----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312
|||| ||||| || | ||| || || ||| |||| || ||||||||
Sbjct 2014941 CGGTCAAGGCCCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCCCAGGTTGAGACTGG 2014995
Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372
|| || || ||||| | ||| || || || |||| ||| || || |||| | ||
Sbjct 2014996 TAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCAGCAGAACCTCGG 2015055
Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||| ||||||||||| || || || | || | || || |||||
Sbjct 2015056 CACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTCGCCGGAGGAGAC 2015115
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 112466
|| ||||| |||||||| || ||||| || |||
Sbjct 2015116 CGCGGTGTGCAACCTCGCGTCCATCGCGCTGCCC 2015149
Score = 123 bits (136), Expect = 3e-23
Identities = 327/487 (67%), Gaps = 22/487 (5%)
Strand=Plus/Plus
Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943
||| ||||| || || ||||| || |||||| ||||||||||||| ||||||| |||||
Sbjct 974208 ACGGTCAAACCGTCCAGGGCGGAGAAGCGCGGGATCAAGGATATCAGCGCGATTGGTTGC 974267
Query 15944 GGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|||| ||| | | ||| | |||| | ||||| ||||||||||| || || |||||
Sbjct 974268 CGCGACGACGATGACACCGGTATTTCCT--TCAAACCCATCCATCTCAGTTAACAGCTGA 974325
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 16060
|| | || || || || |||||||| || || | ||||| | ||| ||
Sbjct 974326 TTGAGTGTCTGCTCGCGCTCATCATTACCTCCGCCGA-TACCAGTTCCGCGGGAACGACC 974384
Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118
|| || || ||||| || | |||| ||||| || ||| || || |||| |
Sbjct 974385 AACAGCGTCTATCTCGTCGACAAAGATTATGCAAGGAGCATTCTCTTTTGC--CTTCTTA 974442
Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178
|| ||||| || || || ||||| || || ||||||||||| ||||| | | |
Sbjct 974443 AATAGATCACGAACGCGGGAAGCGCCGACGCCGACAAACATCTCGACAAACTCCGACCCA 974502
Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
| | || | | || |||||| | ||||| ||||| || || || || |||||
Sbjct 974503 G-AGATGGAAAAAAATGGGACACCGGCCTCACCAGCAATTGCCTTAGCAAGGAGTGTCTT 974561
Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297
|| ||||| || || | || || |||| || || ||||| ||| || |
Sbjct 974562 TCCAGTACCAGGAGGTCCGACTAGAAGAACACCCTTGGGTATTTTGGCACCA--ACCGAT 974619
Query 16298 GT--ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCG 16352
|| |||| || || |||||||||| || |||| ||||| || |||| ||||||
Sbjct 974620 GTGAATCTTTCGGGCCGCTTAAGAAACTCGACAA---CTTCCATGAAATCATTTTTGGCT 974676
Query 16353 GCGTCAA 16359
| ||||
Sbjct 974677 TCATCAA 974683
>seq6
Length=1431126
Score = 134 bits (148), Expect = 2e-26
Identities = 125/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|| || ||||| || |||| || ||||| | ||||| ||||||||||| || ||||||
Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
||| | || || ||||| |||||||| || |||||||| || ||| |||||||||||||
Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388
Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332
|| ||| || |||||||| || |||| || ||||||
Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCG 1273349
Score = 131 bits (144), Expect = 2e-25
Identities = 134/175 (77%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 166379 TTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTATGATC 166438
|||| ||||| || ||||| | || || ||||| ||||||| | | || || ||
Sbjct 499323 TTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTTACGACG 499264
Query 166439 TCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTGCTGGAA 166498
| || ||||||||||| || || || |||||||||||||| |||||||| || || || |
Sbjct 499263 TGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCGCGGGTA 499204
Query 166499 AGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTA 166553
|||| || ||||| ||||| || |||||||| || || ||||| || ||||| ||
Sbjct 499203 AGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAATA 499149
>seq7
Length=1394110
Score = 131 bits (144), Expect = 2e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|| || |||||||| | || || ||||| || ||||| ||||||||||| || || ||
Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTT 900348
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
||||| || | |||||||||||||| || ||||||| || ||| |||||||||||||
Sbjct 900349 TGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAG 900408
Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320
|| ||||| | |||||||| ||||||
Sbjct 900409 CTCATCTCCAGGGACGAGGGCCTCCAC 900435
>seq14
Length=832468
Score = 102 bits (112), Expect = 1e-16
Identities = 276/414 (67%), Gaps = 20/414 (5%)
Strand=Plus/Minus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| || ||||| || ||||| || ||||| || |||| ||| | ||||| ||
Sbjct 528330 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCCGAGTCGAGGACATCCGGCCTGTTCGTCGCC 528271
Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|||| ||| | | || || | | || || || |||||||| |||| ||||||||
Sbjct 528270 GCGAGGACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 528211
Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACC--ACCAGCACTGCGTTGCTTTC 16059
|| || || || || || || || ||| | | || || ||| || ||| || |
Sbjct 528210 ATCGTCTGCTCGCGCTCGTCGTTACCGCCGCCCATGCCGGACCCGCGCTG----GCGA-C 528156
Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACT 16115
| ||||| || ||||| || |||||||||||||| || ||| ||| || |
Sbjct 528155 CGACGGCGTCGATCTCGTCGATGAAGACGATGCACGGAGCTTTGGATTT----GGCCTTT 528100
Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175
|| |||||||| || || ||| ||||| || || || || | ||| ||||| | |
Sbjct 528099 TCGAAGAGATCGCGAACGCGCGACGCGCCGACGCCGACGAAGAGCTCGACAAACTCGGAC 528040
Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235
|||| || || ||| ||||| | || ||||| | || |||||| | ||||
Sbjct 528039 GCGGCGCAGGAGAAGAACGGGACGCCCGCCTCGCCCGCGACAGCCTTGGCGAGCAAAGTC 527980
Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288
||||| || || || ||| |||||| |||||| | | || |||||||| ||
Sbjct 527979 TTACCGGTGCCGGGGGGACCGACGAGGA-GGCACCCCTTGGGGATCTTGGCTCC 527927
>seq13
Length=1011177
Score = 100 bits (110), Expect = 4e-16
Identities = 269/407 (66%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651
|||| |||| || || || | || ||| | | || |||||| ||| || || |
Sbjct 859802 CCGCTTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGA 859861
Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711
||||| || || |||||||| ||||| |||| ||| | ||| | ||| | ||
Sbjct 859862 TGAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTG 859921
Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771
| ||| || ||||||||||| |||| ||| || ||| ||| |||||||||||
Sbjct 859922 GGCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAA 859981
Query 13772 CCATGAATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACC--GAGGGTAT 13828
||| || || || | || |||| |||| || ||||| ||||| ||| | |||
Sbjct 859982 CCACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGG 860040
Query 13829 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 13888
| ||| |||| | || | |||||| | | | | || ||||| |||| || |
Sbjct 860041 CGAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCG 860098
Query 13889 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 13948
|| ||||| |||||| ||||| || || |||||| ||||| || || || |
Sbjct 860099 CGACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAA 860158
Query 13949 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGC 13995
|||| || | ||| || || || || |||||| | | |||||||
Sbjct 860159 GCCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742252573680
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