Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq6 134 2e-26 seq7 131 2e-25 seq14 102 1e-16 seq13 100 4e-16 >seq1 Length=2053059 Score = 197 bits (218), Expect = 2e-45 Identities = 573/874 (66%), Gaps = 36/874 (4%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| || || ||||||| ||||| ||||| ||||| ||| | | || | Sbjct 2014294 CCCCCAGCACCTGCTCATGCGCGTCGCCATCGGCATCCACAAGGATG---TGGAGAAGGC 2014350 Query 111671 TTTGGAGACATACGACAAGATGTCC---CGTGGTATGTTCATCCACGCAACACCAACCCT 111727 | || || ||| ||| | | ||| || | ||| | |||||| | || || || Sbjct 2014351 CATCGACACCTACCACATGCTCTCCGAGCGCTGGATG---ACCCACGCGTCCCCCACGCT 2014407 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||||||| | ||||| || | ||||| |||| |||||||| || || | ||||| Sbjct 2014408 CTTCAACTCGGGTACCCCCCGCCCCCAGCTGTCGTCGTGTTTCCTCATCGCCATGAAGGA 2014467 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 |||||| ||| | ||||| |||| || |||| || || || ||||| |||| || Sbjct 2014468 GGATTCCATCGAGGGCATCTACGATACCCTCAAGGAGTGCGCGTGCATCTCCAAGTCCGC 2014527 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 || || ||||| || |||||| || || | |||| | || || | || || Sbjct 2014528 CGGCGGCATCGGTCTGTCCATCCACGACATCCGCGCCACCTCTTCCTACATCCGCGGCAC 2014587 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || || | || || || || ||||||||||| ||||||| ||| ||| | || Sbjct 2014588 CAACGGAACCTCCAACGGCATCATCCCCATGCTTCGCGTCTTTAACGACACCGCGAGGTA 2014647 Query 111968 TGTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020 || |||| ||||| || |||| || | |||| |||| || ||||| | Sbjct 2014648 CGTCGACCA----GGGCGGCGGCAAGAGGAAAGGCGCATTCGCCATCTACCTCGAGCCGT 2014703 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 |||||||||| ||| | || | || || | || ||||| || | |||||||||| Sbjct 2014704 GGCACGCGGACATCTTCGACTGGCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGCGC 2014763 Query 112081 GGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCA--GATCTCTTCATGAAGAGAGTTG 112137 ||||| | || || |||| || || |||| ||| ||||| ||||||||| | || | Sbjct 2014764 -GTGCCAGGGACCTGTTCTACGGCCTGTGGA--CCAACGATCTGTTCATGAAGCGCGTCG 2014820 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 ||| | ||| | ||| | ||||| || || || | || || |||||| | ||| | Sbjct 2014821 AGGCTAACGGCGAGTGGACCCTCTTCTGCCCCAACGAAGCCCCGGGTCTCGCGGATTGCT 2014880 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257 ||| |||||||| || || || ||| ||||||||||| || | || | || Sbjct 2014881 GGGGCGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGGCGGAGGGCAAGGGTAAGAAGA 2014940 Query 112258 CGGT-----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 |||| ||||| || | ||| || || ||| |||| || |||||||| Sbjct 2014941 CGGTCAAGGCCCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCCCAGGTTGAGACTGG 2014995 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 || || || ||||| | ||| || || || |||| ||| || || |||| | || Sbjct 2014996 TAACCCGTACATGCTCTTCAAGGATGCGTGCAACCGCAAGTCCAACCAGCAGAACCTCGG 2015055 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||| ||||||||||| || || || | || | || || ||||| Sbjct 2015056 CACCATCCGATCCTCCAACCTCTGCACCGAGATTGTCGAGTACACCTCGCCGGAGGAGAC 2015115 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 112466 || ||||| |||||||| || ||||| || ||| Sbjct 2015116 CGCGGTGTGCAACCTCGCGTCCATCGCGCTGCCC 2015149 Score = 123 bits (136), Expect = 3e-23 Identities = 327/487 (67%), Gaps = 22/487 (5%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||| || || ||||| || |||||| ||||||||||||| ||||||| ||||| Sbjct 974208 ACGGTCAAACCGTCCAGGGCGGAGAAGCGCGGGATCAAGGATATCAGCGCGATTGGTTGC 974267 Query 15944 GGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 |||| ||| | | ||| | |||| | ||||| ||||||||||| || || ||||| Sbjct 974268 CGCGACGACGATGACACCGGTATTTCCT--TCAAACCCATCCATCTCAGTTAACAGCTGA 974325 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 16060 || | || || || || |||||||| || || | ||||| | ||| || Sbjct 974326 TTGAGTGTCTGCTCGCGCTCATCATTACCTCCGCCGA-TACCAGTTCCGCGGGAACGACC 974384 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118 || || || ||||| || | |||| ||||| || ||| || || |||| | Sbjct 974385 AACAGCGTCTATCTCGTCGACAAAGATTATGCAAGGAGCATTCTCTTTTGC--CTTCTTA 974442 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || || ||||| || || ||||||||||| ||||| | | | Sbjct 974443 AATAGATCACGAACGCGGGAAGCGCCGACGCCGACAAACATCTCGACAAACTCCGACCCA 974502 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | | || |||||| | ||||| ||||| || || || || ||||| Sbjct 974503 G-AGATGGAAAAAAATGGGACACCGGCCTCACCAGCAATTGCCTTAGCAAGGAGTGTCTT 974561 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || || | || || |||| || || ||||| ||| || | Sbjct 974562 TCCAGTACCAGGAGGTCCGACTAGAAGAACACCCTTGGGTATTTTGGCACCA--ACCGAT 974619 Query 16298 GT--ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCG 16352 || |||| || || |||||||||| || |||| ||||| || |||| |||||| Sbjct 974620 GTGAATCTTTCGGGCCGCTTAAGAAACTCGACAA---CTTCCATGAAATCATTTTTGGCT 974676 Query 16353 GCGTCAA 16359 | |||| Sbjct 974677 TCATCAA 974683 >seq6 Length=1431126 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || |||| || ||||| | ||||| ||||||||||| || |||||| Sbjct 1273507 TTCGCCGAGCGCCTGATCGCGTTCGCGTGCATCGAGGGCATCTTCTTCTCCGGCTCCTTC 1273448 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||| | || || ||||| |||||||| || |||||||| || ||| ||||||||||||| Sbjct 1273447 TGCTCCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 1273388 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || ||| || |||||||| || |||| || |||||| Sbjct 1273387 CTCATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCG 1273349 Score = 131 bits (144), Expect = 2e-25 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 166379 TTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTATGATC 166438 |||| ||||| || ||||| | || || ||||| ||||||| | | || || || Sbjct 499323 TTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTTACGACG 499264 Query 166439 TCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTGCTGGAA 166498 | || ||||||||||| || || || |||||||||||||| |||||||| || || || | Sbjct 499263 TGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCGCGGGTA 499204 Query 166499 AGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTA 166553 |||| || ||||| ||||| || |||||||| || || ||||| || ||||| || Sbjct 499203 AGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAATA 499149 >seq7 Length=1394110 Score = 131 bits (144), Expect = 2e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || |||||||| | || || ||||| || ||||| ||||||||||| || || || Sbjct 900289 TTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGGATCGTTT 900348 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||||||||||| || ||||||| || ||| ||||||||||||| Sbjct 900349 TGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAG 900408 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||| | |||||||| |||||| Sbjct 900409 CTCATCTCCAGGGACGAGGGCCTCCAC 900435 >seq14 Length=832468 Score = 102 bits (112), Expect = 1e-16 Identities = 276/414 (67%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || ||||| || ||||| || ||||| || |||| ||| | ||||| || Sbjct 528330 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCCGAGTCGAGGACATCCGGCCTGTTCGTCGCC 528271 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| ||| | | || || | | || || || |||||||| |||| |||||||| Sbjct 528270 GCGAGGACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 528211 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACC--ACCAGCACTGCGTTGCTTTC 16059 || || || || || || || || ||| | | || || ||| || ||| || | Sbjct 528210 ATCGTCTGCTCGCGCTCGTCGTTACCGCCGCCCATGCCGGACCCGCGCTG----GCGA-C 528156 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACT 16115 | ||||| || ||||| || |||||||||||||| || ||| ||| || | Sbjct 528155 CGACGGCGTCGATCTCGTCGATGAAGACGATGCACGGAGCTTTGGATTT----GGCCTTT 528100 Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 || |||||||| || || ||| ||||| || || || || | ||| ||||| | | Sbjct 528099 TCGAAGAGATCGCGAACGCGCGACGCGCCGACGCCGACGAAGAGCTCGACAAACTCGGAC 528040 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 |||| || || ||| ||||| | || ||||| | || |||||| | |||| Sbjct 528039 GCGGCGCAGGAGAAGAACGGGACGCCCGCCTCGCCCGCGACAGCCTTGGCGAGCAAAGTC 527980 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 ||||| || || || ||| |||||| |||||| | | || |||||||| || Sbjct 527979 TTACCGGTGCCGGGGGGACCGACGAGGA-GGCACCCCTTGGGGATCTTGGCTCC 527927 >seq13 Length=1011177 Score = 100 bits (110), Expect = 4e-16 Identities = 269/407 (66%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || || || | || ||| | | || |||||| ||| || || | Sbjct 859802 CCGCTTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGA 859861 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 ||||| || || |||||||| ||||| |||| ||| | ||| | ||| | || Sbjct 859862 TGAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTG 859921 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | ||| || ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 859922 GGCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAA 859981 Query 13772 CCATGAATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTACC--GAGGGTAT 13828 ||| || || || | || |||| |||| || ||||| ||||| ||| | ||| Sbjct 859982 CCACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGG 860040 Query 13829 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 13888 | ||| |||| | || | |||||| | | | | || ||||| |||| || | Sbjct 860041 CGAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCG 860098 Query 13889 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 13948 || ||||| |||||| ||||| || || |||||| ||||| || || || | Sbjct 860099 CGACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAA 860158 Query 13949 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGC 13995 |||| || | ||| || || || || |||||| | | ||||||| Sbjct 860159 GCCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742252573680