Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 199 5e-46 seq13 140 4e-28 seq7 138 1e-27 seq14 136 5e-27 >seq1 Length=2053059 Score = 199 bits (220), Expect = 5e-46 Identities = 557/850 (66%), Gaps = 10/850 (1%) Strand=Plus/Minus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||| || || || ||||| || |||||||| | ||||| || |||||| || | Sbjct 2015149 GGGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGAC 2015090 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 ||| || || || | |||||| ||| || | ||||| ||| || || ||| Sbjct 2015089 AATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCG 2015030 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||||| |||||||| |||||||||| ||| ||||||| || ||| |||| ||| || Sbjct 2015029 GTTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGAT 2014970 Query 110460 GGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 ||| ||| | | ||| ||| || ||| | || ||| |||||||||| Sbjct 2014969 GGCGAACCAGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTT 2014910 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 ||||| |||| || |||| || | ||| | |||||| || | || ||| Sbjct 2014909 TTCGTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTGGG 2014850 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 |||||||||| ||| | || |||| || | |||||||||||| || |||| Sbjct 2014849 GCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCA 2014790 Query 110640 CATCGCCG-AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 || |||| |||| ||||| | | ||| ||||| || | || ||||| ||| || | Sbjct 2014789 CA-GGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 2014731 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC 110758 | | |||| | ||| |||| |||||| || ||||| |||| |||| | || || | Sbjct 2014730 CGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCC 2014671 Query 110759 ----GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 | || || |||||| || || | || ||| | || ||||| | ||||| || Sbjct 2014670 TCTTGCCG-CCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGG 2014612 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874 || || || | ||| || || || || | || ||| |||| || |||||| Sbjct 2014611 ATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCG 2014552 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 ||||| || ||| || || || || |||| || || ||||| |||| ||| Sbjct 2014551 TGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTA 2014492 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 | || || || || || ||||| |||| |||| || || || || || |||| ||| Sbjct 2014491 TCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGG 2014432 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGAC 111054 || || || || |||| |||||||| || || | ||| || | | | | | ||| Sbjct 2014431 GGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAG 2014372 Query 111055 ATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACT 111114 | | ||| ||| ||||||| || ||||| || ||| || || ||||| || Sbjct 2014371 AGCATGTGGTAGGTGTCGATGGCCTTCTCCACATCCTT---GTGGATGCCGATGGCGACG 2014315 Query 111115 CGCATGAACA 111124 ||||||| || Sbjct 2014314 CGCATGAGCA 2014305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 110072 AGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAA 110131 |||||||||| | || || || || || || || || |||||||| ||||| |||| Sbjct 2015420 AGTCGAAGGGCATGCCGAGGAGGATGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAA 2015361 Query 110132 TGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGA 110191 |||| | ||||||||||| ||| | || || || |||||||| ||||| ||||| Sbjct 2015360 TGGGCCTGTGCTTCATGTTGCTGCGCCTGGCGGTCTCGACGGGGTAGTAGTTGACGTCGA 2015301 Query 110192 TGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGA 110251 ||| || ||||| || ||||| | ||||| || ||| ||||||| |||| Sbjct 2015300 TGATGCGGTTGAGGTTGCGGGTCACCTTGCGGGTGATCTCGGCGAGCTTGTCGTGGTCGA 2015241 Query 110252 A 110252 | Sbjct 2015240 A 2015240 >seq13 Length=1011177 Score = 140 bits (154), Expect = 4e-28 Identities = 317/466 (68%), Gaps = 17/466 (4%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| | |||||| ||||| |||||||| || || || || ||||| ||||| Sbjct 363044 ATCTGCCTATCGAACCGACCAGGGCGGAGCAGCGCGCGGTCGAGGATATCCGGTCGGTTG 362985 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGA 11613 || | || | || || | ||| ||| ||| ||||||||||||| || ||| Sbjct 362984 GTGCCCGCGAGCACCACCACGCC---CTCCTTGCTCCCGAAACCGTCCATCTCCACGAGG 362928 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCG----AACG 11669 |||||||| | ||| | ||| | ||| ||||| | ||| | || |||| || Sbjct 362927 AGCTGGTTCAGCGTGTTTTCCCTCTCGTCGTTCCCGCCCAT-CATCCCGCCGCGCCCGCG 362869 Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-G 11728 || ||||| ||||||||||| |||||||| | ||| | ||| | |||| | | | Sbjct 362868 CTGGCGACCGATGGCGTCAATCTCGTCGATGAAGATGATGCTCGG-CGCCTGGCTCCTGG 362810 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||||| |||| || || || || || ||| || || || ||||||||||| | ||||| Sbjct 362809 CCTGTGCGAAGAGATCGCGGACGCGGCTCGGGCCCACGCCCACGAACATCTCCATGAAGT 362750 Query 11789 TTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | ||| | | || | || ||||| |||||| || || | || |||||| Sbjct 362749 CAGAGCCAG-ATATGGACAGAAACGGAACCCCAGACTCGCCCGCCGTAGCCTTGGCGAGG 362691 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC- 11906 || ||||| ||||| || || | || | || || ||||| || |||||||| || || Sbjct 362690 AGCGTCTTGCCCGTCCCCGGGGGGCCGACCAGCAGCGCGCCTCGAGGGATCTTCGCGCCG 362631 Query 11907 ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | ||| ||| || |||||||||||||| || |||| |||| Sbjct 362630 AGGTCC-TCGTATTTCTTGGGCTTCTTGAGGAAATCGACAAACTCC 362586 >seq7 Length=1394110 Score = 138 bits (152), Expect = 1e-27 Identities = 275/397 (69%), Gaps = 14/397 (4%) Strand=Plus/Minus Query 11583 CTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATC 11642 ||| | |||||||||||||| || ||||| |||||||||| |||||| || ||||| || Sbjct 536802 CTCGTCGTCGAAACCGTCCAGCTCGGTGAGCAGCTGGTTGAGCGTCTGCTCGCGCTCGTC 536743 Query 11643 GTTGG--AGG----GCATACCACCTGCCGAACGCTTC--TTACCGACAGCGTCAATCTCA 11694 ||| | | ||| || || | || | || | || |||| ||||| ||||| Sbjct 536742 GTTCCCCATGCCCCGCAGACGCCC-GTCGCTC-CTGCCCTTGGCGACGGCGTCGATCTCG 536685 Query 11695 TCGATGAATACGATACACGGTTGGTTGGCACGTGCCT-GTTCGAAAAGTTCACGTACACG 11753 |||||||| ||||| | ||| | || | || | | |||| | || | || || Sbjct 536684 TCGATGAACACGAT-CGCGGGCGCCTGCTCCCTGGCGCGCGCGAACACGTCCCTGACGCG 536626 Query 11754 CTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGG 11812 ||| || | || | | ||| ||| || || | | || || || |||| |||||| Sbjct 536625 AGCCGCGCCCATGCCCATGTACAGCTCCACAAACTCGGAAGCCGAGACGCTGA-TGAAGG 536567 Query 11813 GAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCAC 11872 |||| || ||| || |||| ||| | ||||| | |||||| || || || || || | Sbjct 536566 GAACGCCAGCCTCGCCCGCGACGGCCCTGGCGAGCAAAGTCTTGCCGGTGCCGGGCGCGC 536507 Query 11873 CAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCT 11932 | |||| ||| |||| | |||| | |||| || | |||| |||| ||| ||| Sbjct 536506 CCACGAGCAGGACGCCGCAGGGGGGCCTGGCGCCGAGCCTGGTGTAGTGCTCGGGCCTCT 536447 Query 11933 TGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 |||||| ||| |||||||||| ||||||||||||||| Sbjct 536446 TGAGGATGTCGACAATCTCCTGAAGTTCCTCCTTGGC 536410 Score = 105 bits (116), Expect = 8e-18 Identities = 171/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || |||| ||||||||||| || |||| || || ||||||| || Sbjct 900434 TGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCGCATGAGCCCG 900375 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| || ||||| ||| || ||||||||||||||||| || Sbjct 900374 CGCTTCTTGAGCCAGAAGATTGCGCAAAACGATCCGGAGAAGAAGATGCCCTCCACGCAC 900315 Query 119628 GCGAAAGCGAATAGACGCTCAGC--AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCC 119685 ||||| || | || ||||| || || | |||| || || ||||||||| |||| Sbjct 900314 GCGAACGCCACCAGTCGCTCGGCGAAACACTCCGAGGACTG--GATCCACTTGAGGGCCC 900257 Query 119686 AGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTT-T 119744 | | ||||| ||| | | ||| || | || ||||| ||| || ||| |||| | Sbjct 900256 ACTGCGCCTTGCGCGCCACCGTGGGCACGTTGTGAATGGCCCTGAACAGGTGCCTCTTCT 900197 Query 119745 TCA 119747 ||| Sbjct 900196 TCA 900194 >seq14 Length=832468 Score = 136 bits (150), Expect = 5e-27 Identities = 329/493 (67%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || || || | ||| | ||| || || Sbjct 528330 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCCGAGTCGAGGACATCCGGCCTGTTCGTCGCC 528271 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | ||| | | ||| || | ||||| |||||||| || || || ||||||||| Sbjct 528270 GCGAGGACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 528211 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAA----CGCTTCTTACC 11678 |||||||| || ||||| ||||| | || ||| ||||| | |||| ||| Sbjct 528210 ATCGTCTGCTCGCGCTCGTCGTT--ACCGCCGCCCA--TGCCGGACCCGCGCTGGCGACC 528155 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||| ||||| ||||| |||||||| ||||| ||||| |||| |||| |||||| Sbjct 528154 GACGGCGTCGATCTCGTCGATGAAGACGATGCACGGAGCTTTGGATTTGGCCTTTTCGAA 528095 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || || || || ||| ||| || || || ||||| | ||| || || | | || | Sbjct 528094 GAGATCGCGAACGCGCGACGCGCCGACGCCGACGAAGAGCTCGACAAACTCGGACGCGGC 528035 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || | ||| || || | ||| || |||| || ||||| | ||||||||| Sbjct 528034 GCAGGAGAAGAACGGGACGCCCGCCTCGCCCGCGACAGCCTTGGCGAGCAAAGTCTTACC 527975 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAGT 11917 || || || | ||| |||| ||| || |||||||||||| || | | | || Sbjct 527974 GGTGCCGGGGGGACCGACGAGGAGGCACCCCTTGGGGATCTTGGCTCCGAGCTGC-GTGT 527916 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGA 11977 | || || |||||||| ||||| |||| ||||| || || ||||||| ||||| Sbjct 527915 ACTTGTCGGGATTCTTGAGAAAGTCGACAACCTCCTGGAGCTCGAGCTTGGCGCCGTCGA 527856 Query 11978 TACCCTCAACATC 11990 ||| | || || Sbjct 527855 CGCCCGCGACGTC 527843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975860118200