Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq6 161 1e-34 seq7 118 1e-21 seq13 104 3e-17 seq14 102 1e-16 seq5 96.9 4e-15 >seq1 Length=2053059 Score = 197 bits (218), Expect = 2e-45 Identities = 621/951 (65%), Gaps = 26/951 (3%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 2015148 GGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACA 2015089 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| || || || | |||| ||||| ||| | Sbjct 2015088 ATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGG 2015029 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||||||||||||| |||||||||| || | || ||||| ||| |||| ||| || Sbjct 2015028 TTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATG 2014969 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGT----TGGCCCGT-CCCTCCGCCTCGT 106691 || ||| | || ||||| | ||| | ||| | ||||||||||||| Sbjct 2014968 GCGAACCAGA-----GCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGT 2014914 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTG 106750 ||||| ||| || || || |||||||| ||| | || || | |||||| || || | | Sbjct 2014913 ACTTTTCGTACAGAGCCTCGAACTCCTCGCCC-CAGCAATCCGCGAGACCCGGGGCTTCG 2014855 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC--TG 106808 | || ||||| || | ||| | || |||| || ||||||||||| || || || Sbjct 2014854 TTGGGGCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTG 2014795 Query 106809 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 | |||||||| | || || || || || ||||| || | || ||||| | Sbjct 2014794 G--TCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGC 2014737 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG--- 106925 | | || || | || | ||| ||||||||||| ||||| || |||| |||| | Sbjct 2014736 GGAGGTCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGC 2014677 Query 106926 -ATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 106984 | ||| | | || || | || | || || | ||| ||| ||||||| ||||||||| Sbjct 2014676 CTTTCCTCTTGCCG-CCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGC 2014618 Query 106985 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 107044 || || || || || | || || || || || || || || |||| | Sbjct 2014617 ATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGG 2014558 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | || |||||| || || || || || || |||| ||||| ||| |||||| | Sbjct 2014557 ATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTG 2014498 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | ||||| || | ||| || |||||||| ||||||| ||||| || ||| Sbjct 2014497 AGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGAC 2014438 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 | ||| || | || ||||| | |||||||| || || | ||||| | | | | Sbjct 2014437 AGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGC 2014378 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | ||| | | ||| ||| || || | | | || | | ||| ||||||||||||| Sbjct 2014377 TCGGAGAGCATGTGGTAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATG 2014321 Query 107285 GCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 107344 || || ||||| | || || ||||| |||| || |||| |||| || | || Sbjct 2014320 GCGACGCGCATGAGCAGGTGCTGGGGGCGCTCCACGATCTTGCCGTCGACGCGGAGGAGG 2014261 Query 107345 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | || ||| || || ||| || |||||| | | ||| |||| || Sbjct 2014260 TACGATC-GCTCCAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCG 2014211 Score = 107 bits (118), Expect = 2e-18 Identities = 321/485 (66%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| ||||| || || || || || |||||| ||||||||||||| ||||||| || || Sbjct 974208 ACGGTCAAACCGTCCAGGGCGGAGAAGCGCGGGATCAAGGATATCAGCGCGATTGGTTGC 974267 Query 9251 GGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308 |||| ||| | | ||| | |||| | ||||| ||||||||||| || || || || Sbjct 974268 CGCGACGACGATGACACCGGTATTTCCT--TCAAACCCATCCATCTCAGTTAACAGCTGA 974325 Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 9367 || | || || || || |||||||| || || | ||||| | ||| || Sbjct 974326 TTGAGTGTCTGCTCGCGCTCATCATTACCTCCGCCGA-TACCAGTTCCGCGGGAACGACC 974384 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 || || || ||||| || | |||| || || || ||| || || | | ||| Sbjct 974385 AACAGCGTCTATCTCGTCGACAAAGATTATGCAAGGAGCATTCTCTTTTGCCTTCTTAAA 974444 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||||| ||||| | ||||| || || ||||||||||| ||||| | | | | Sbjct 974445 TAGATCACGAACGCGGGAAGCGCCGACGCCGACAAACATCTCGACAAACTCCGACCCAG- 974503 Query 9488 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 | || | | || |||||| | ||||| ||||| || || || || ||||| | Sbjct 974504 AGATGGAAAAAAATGGGACACCGGCCTCACCAGCAATTGCCTTAGCAAGGAGTGTCTTTC 974563 Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT 9606 | ||||| || || | || || ||||| || || ||||| ||| || | || Sbjct 974564 CAGTACCAGGAGGTCCGACTAGAAGAACACCCTTGGGTATTTTGGCACCA--ACCGATGT 974621 Query 9607 --ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGC 9661 |||| || || |||| ||||| || |||| ||||| || |||| |||||| | Sbjct 974622 GAATCTTTCGGGCCGCTTAAGAAACTCGACAA---CTTCCATGAAATCATTTTTGGCTTC 974678 Query 9662 GTCAA 9666 |||| Sbjct 974679 ATCAA 974683 >seq6 Length=1431126 Score = 161 bits (178), Expect = 1e-34 Identities = 310/450 (69%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 1273062 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTCCATC 1273121 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||| || || || ||||| | | || || | || |||||| || Sbjct 1273122 CAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAGGTGA 1273181 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | || |||| |||||||||||||| || | |||||| |||| ||| || Sbjct 1273182 TCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGCGCAG 1273241 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 117224 ||||| ||||| ||| ||| | ||||| ||||| || ||||| || ||||| || || Sbjct 1273242 GGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTGCCTG 1273301 Query 117225 --GATAGTTTCGGTAGTGGGTCTA-TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 || | ||| | | | ||| || | | | || ||| |||| |||| || Sbjct 1273302 ACGACGGACTCGTTGG-GCTTCTTGTTGATGTACGAGTAGAGGAGG--CACG-CAAAGTC 1273357 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 |||| || ||||| || ||| || || || || |||||| ||||| |||||||| Sbjct 1273358 GCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAG 1273417 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || |||||||||| ||| || || | |||||| || |||||||||||||| ||||| | Sbjct 1273418 GCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGAT 1273477 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| ||||| | |||||||||||||| Sbjct 1273478 GCACGCGAACGCGATCAGGCGCTCGGCGAA 1273507 Score = 143 bits (158), Expect = 3e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 158586 TTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTATGATC 158645 |||| ||||| || ||||| | || || ||||| ||||||| | | || || || Sbjct 499323 TTGCCAAGCACAACACCGAGGGCGACTGCTGGGTGATTATCAGCGGCAAGGTTTACGACG 499264 Query 158646 TCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATACTTTTCGCTGGAA 158705 | || ||||||||||| || || || |||||||||||||| ||||| || ||||| || | Sbjct 499263 TGACCAAGTTTTTGCCGGACCACCCGGGTGGCAAGAAGGCTATCATGCTCTTCGCGGGTA 499204 Query 158706 AGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTATCTCA 158765 |||| || ||||| ||||| || |||||||| || || ||||| || ||||| || ||| Sbjct 499203 AGGACGCAACGGAGGAGTTCGACATGCTCCACCCTCCCAATGTGCTCAAGAAATACCTCC 499144 Query 158766 CACCGGAGGTGGTTCTCGGACC 158787 | || |||| | |||||||| Sbjct 499143 CGCCCGAGGCGTGCCTCGGACC 499122 >seq7 Length=1394110 Score = 118 bits (130), Expect = 1e-21 Identities = 230/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || || |||| ||| |||| |||||||||||||| || | |||||| || | ||| Sbjct 900620 AGGCGGTCCGCGACAAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCCACGAGC 900561 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || | || || || | | ||| | ||||| || || ||||| || || ||||| Sbjct 900560 GCGCACGACAGAGCATCGCACACAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATC 900501 Query 117220 GCGTGGATAGTTTCGGTA----GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGC 117275 | || | ||| | | |||| | | ||| | | || ||| || ||| Sbjct 900500 TCCTGCAGCCGCGCGGGATCGAGAGGGTGCTTGA-GCATGGAGTAGAGGAGG--CA-GGC 900445 Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335 || || |||||| ||||| || | ||| || || || || |||||| || || | Sbjct 900444 GAAGTCGCAGTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCG 900385 Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 117395 |||||| || |||||||| | ||| | || ||||| || || |||||||||||||| || Sbjct 900384 CATGAGCCCGCGCTTCTTGAGCCAGAAGATTGCGCAAAACGATCCGGAGAAGAAGATGCC 900325 Query 117396 CTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 |||||| ||||| ||||| | || ||||||||||| Sbjct 900324 CTCCACGCACGCGAACGCCACCAGTCGCTCGGCGAA 900289 >seq13 Length=1011177 Score = 104 bits (114), Expect = 3e-17 Identities = 270/407 (66%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || || || |||| ||| | | || |||||| ||| || || | Sbjct 859802 CCGCTTCTACCAGGCGTCCACCTCCGAGCTCTACGGCAAGGTTCAGGCCATCCCCCAGGA 859861 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 ||||| || || |||||||| ||||| |||| ||| | ||| | ||| | || Sbjct 859862 TGAGGACACCCCTTTCTACCCCCGCTCCCCTTACGCCGTCGCCAAGATGATGGCGTACTG 859921 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||| || ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 859922 GGCCGTGGTCAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCCTCTTCAA 859981 Query 7079 CCATGAATCACCGAGACGAGGTGCAGAC-TTTGTCACAAAGAAGATTACC--GAGGGTAT 7135 ||| || || || | || |||| |||| || || || ||||| ||| | ||| Sbjct 859982 CCACGAGTCCCCCCGCCGCGGTG-AGACGTTCGTGACGCGCAAGATCACCCTGGCGGTGG 860040 Query 7136 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 7195 | ||| |||| | || | |||||| | | | | || ||||| |||| || | Sbjct 860041 CGAAC--ATCAAGGCTGGCAAGCAGGAGTGCCTCTACCTCGGCAACATGGACGCCAAGCG 860098 Query 7196 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGA 7255 || ||||| |||||| ||||| || || ||||||| ||||| || || || | Sbjct 860099 CGACTGGGGCCACGCGCGCGACTACGTCGAGTGCATGTGGAGGATGCTCCAGCAGGACAA 860158 Query 7256 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGC 7302 |||| || | ||| || || || || |||||| | | ||||||| Sbjct 860159 GCCCGAGGACTTTGTCGTCGCGACCGGCGAGACCAACACCGTGAGGC 860205 >seq14 Length=832468 Score = 102 bits (112), Expect = 1e-16 Identities = 305/460 (66%), Gaps = 22/460 (5%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || || ||||| || || || || ||||| || |||| ||| | |||||||| Sbjct 528330 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCCGAGTCGAGGACATCCGGCCTGTTCGTCGCC 528271 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| ||| | | || || | || || || |||||||| |||| || ||||| Sbjct 528270 GCGAGGACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 528211 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACC--ACCAGCACTGCGTTGCTTTC 9366 || || || || || || || || ||| | | || || ||| || ||| || | Sbjct 528210 ATCGTCTGCTCGCGCTCGTCGTTACCGCCGCCCATGCCGGACCCGCGCTG----GCGA-C 528156 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATT 9422 | ||||| || ||||| || |||||||| || || || ||| ||| ||| || Sbjct 528155 CGACGGCGTCGATCTCGTCGATGAAGACGATGCACGGAGCTTTGGATTT----GGCCTTT 528100 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 || |||||||||||||| | ||||| || || || || | ||| ||||| | | Sbjct 528099 TCGAAGAGATCGCGAACGCGCGACGCGCCGACGCCGACGAAGAGCTCGACAAACTCGGAC 528040 Query 9483 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 |||| || || ||| ||||| | || ||||| | || |||||| | |||| Sbjct 528039 GCGGCGCAGGAGAAGAACGGGACGCCCGCCTCGCCCGCGACAGCCTTGGCGAGCAAAGTC 527980 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC-ACTTC 9600 ||||| || || || ||| |||||| |||||||| | || |||||||| || | | Sbjct 527979 TTACCGGTGCCGGGGGGACCGACGAGGA-GGCACCCCTTGGGGATCTTGGCTCCGAGCTG 527921 Query 9601 CAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | ||| | || || | ||||||||| || |||| ||| Sbjct 527920 C-GTGTACTTGTCGGGATTCTTGAGAAAGTCGACAACCTC 527882 >seq5 Length=1518631 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/164 (74%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| || ||||| || |||||||| || |||| || || ||||||||||| || | || Sbjct 239184 CTTACCGCGGAGCGGGAAGACGCCGTATCGATCGCGACCGACGACGGAGAGGCCGGACAC 239125 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGC- 169478 |||||| | ||||| || ||||| || || | |||||||| || | | || |||| Sbjct 239124 CGCAAGTGCCTTCGCCGAGTCACCTTCGGTAAGGATGAGGGTGCAGTGCTCGGAGTTGCG 239065 Query 169479 GCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGT 169522 |||| ||||| | ||| ||||| || | ||||||||| || || Sbjct 239064 GCCG--CCCGCGTCGTTGGCGTCATCGAGCTTGGGAATGCCGGT 239023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980659879560