Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq19 820 0.0 >seq19 Length=72585 Score = 820 bits (908), Expect = 0.0 Identities = 776/983 (79%), Gaps = 8/983 (1%) Strand=Plus/Plus Query 179757 TGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCA 179816 ||| | || || || | ||||| || || ||||||||||||| || | ||||| || Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243 Query 179817 ACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 179875 ||| | | |||||||| || | |||||||| || || || |||||||| ||||| || Sbjct 10244 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 10302 Query 179876 CATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 179935 |||||||| |||||||| || || |||| ||||| ||||| || |||||||||||||| Sbjct 10303 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 10362 Query 179936 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 179995 |||||| || | ||| | || ||||| || || ||||||||||| || ||||||||||| Sbjct 10363 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 10422 Query 179996 CGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTT 180055 || || ||||| |||||||| || ||||||||||||| ||| ||| |||| | ||||| Sbjct 10423 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 10482 Query 180056 CCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTAT 180115 | | || || || | | | |||||||||||||||||||| ||||||| || || || || Sbjct 10483 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 10542 Query 180116 GCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCC 180174 ||| || ||||| ||| ||||| || |||||||| || || |||||| | ||||||||| Sbjct 10543 GCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCA 10601 Query 180175 TCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCA 180234 |||| || || ||||||| ||||| |||||||| | |||||| || || |||||||| | Sbjct 10602 TCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAA 10661 Query 180235 CCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACA 180294 | ||||||| |||| | || ||||| || |||||||||||||| |||||||| ||||||| Sbjct 10662 CTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACA 10721 Query 180295 TGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGG 180354 |||| || || || ||||| ||||| |||||||| ||||| ||||||||||||||||| | Sbjct 10722 TGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCG 10781 Query 180355 TTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGT 180414 | || || || || | ||||| || ||||| | ||||| ||| || ||||||| Sbjct 10782 TAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGT 10841 Query 180415 TTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGA 180474 | || |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| | Sbjct 10842 TCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTA 10901 Query 180475 TCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGC 180534 ||||||| || || || ||||||||||| |||||||| ||||||||||| ||| |||| Sbjct 10902 TCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGC 10961 Query 180535 CTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACG 180594 | || | || ||||||||||| || |||| | || ||||| |||||||| |||| Sbjct 10962 CAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACG 11021 Query 180595 GTTTCAACTTCAACCAGTCCATCATTGATGGTCAA--GGTCGTGTGCTCAACACTTGGGC 180652 | ||||||||||||||||| | | ||| |||| || ||||| | ||||| ||||| Sbjct 11022 GATTCAACTTCAACCAGTCTGTAGTAGAT--TCAAACGGACGTGTAATTAACACATGGGC 11079 Query 180653 AGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 180712 || | | ||||| ||| || ||||||||||| |||||||||||||| |||||||| Sbjct 11080 TGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAA 11139 Query 180713 CTTCCCACTTGACCTGGCAGCTG 180735 ||||||||||||||| ||| ||| Sbjct 11140 CTTCCCACTTGACCTTGCATCTG 11162 Score = 820 bits (908), Expect = 0.0 Identities = 776/983 (79%), Gaps = 8/983 (1%) Strand=Plus/Minus Query 179757 TGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCA 179816 ||| | || || || | ||||| || || ||||||||||||| || | ||||| || Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900 Query 179817 ACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 179875 ||| | | |||||||| || | |||||||| || || || |||||||| ||||| || Sbjct 36899 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 36841 Query 179876 CATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 179935 |||||||| |||||||| || || |||| ||||| ||||| || |||||||||||||| Sbjct 36840 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 36781 Query 179936 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 179995 |||||| || | ||| | || ||||| || || ||||||||||| || ||||||||||| Sbjct 36780 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 36721 Query 179996 CGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTT 180055 || || ||||| |||||||| || ||||||||||||| ||| ||| |||| | ||||| Sbjct 36720 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 36661 Query 180056 CCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTAT 180115 | | || || || | | | |||||||||||||||||||| ||||||| || || || || Sbjct 36660 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 36601 Query 180116 GCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCC 180174 ||| || ||||| ||| ||||| || |||||||| || || |||||| | ||||||||| Sbjct 36600 GCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCA 36542 Query 180175 TCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCA 180234 |||| || || ||||||| ||||| |||||||| | |||||| || || |||||||| | Sbjct 36541 TCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAA 36482 Query 180235 CCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACA 180294 | ||||||| |||| | || ||||| || |||||||||||||| |||||||| ||||||| Sbjct 36481 CTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACA 36422 Query 180295 TGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGG 180354 |||| || || || ||||| ||||| |||||||| ||||| ||||||||||||||||| | Sbjct 36421 TGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCG 36362 Query 180355 TTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGT 180414 | || || || || | ||||| || ||||| | ||||| ||| || ||||||| Sbjct 36361 TAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGT 36302 Query 180415 TTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGA 180474 | || |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| | Sbjct 36301 TCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTA 36242 Query 180475 TCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGC 180534 ||||||| || || || ||||||||||| |||||||| ||||||||||| ||| |||| Sbjct 36241 TCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGC 36182 Query 180535 CTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACG 180594 | || | || ||||||||||| || |||| | || ||||| |||||||| |||| Sbjct 36181 CAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACG 36122 Query 180595 GTTTCAACTTCAACCAGTCCATCATTGATGGTCAA--GGTCGTGTGCTCAACACTTGGGC 180652 | ||||||||||||||||| | | ||| |||| || ||||| | ||||| ||||| Sbjct 36121 GATTCAACTTCAACCAGTCTGTAGTAGAT--TCAAACGGACGTGTAATTAACACATGGGC 36064 Query 180653 AGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 180712 || | | ||||| ||| || ||||||||||| |||||||||||||| |||||||| Sbjct 36063 TGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAA 36004 Query 180713 CTTCCCACTTGACCTGGCAGCTG 180735 ||||||||||||||| ||| ||| Sbjct 36003 CTTCCCACTTGACCTTGCATCTG 35981 Score = 594 bits (658), Expect = 6e-165 Identities = 744/1018 (73%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 181420 ATGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 181479 ||||||||||| | | || ||||||||||| || || || || || || || || ||||| Sbjct 1991 ATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGGTC 2050 Query 181480 TGGACTACTTCTTTTTCCCA-CTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTA 181538 ||| | || || |||||| ||| || ||||| |||| || ||| | ||||| || | Sbjct 2051 AGGAAT-TTTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACAA 2109 Query 181539 CTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATT 181598 | || || || || |||||||| ||||| || || ||| ||||||||||| ||| | Sbjct 2110 CATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAACT 2169 Query 181599 TCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT 181658 |||||||| |||| || ||||| || || || ||||| ||| || |||||||| |||| Sbjct 2170 TCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTTT 2229 Query 181659 GGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTT 181718 |||| || ||||| || || || ||| || ||| || ||||| ||| | ||| | | Sbjct 2230 GGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACAT 2289 Query 181719 TTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTG 181778 | || || || ||||| || |||| | ||||| ||||||||| | ||||||||| ||| Sbjct 2290 TCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATTG 2349 Query 181779 CTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTAT 181838 | ||| | | ||| || || ||||| |||||||| || || | ||||| ||||||| Sbjct 2350 CACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTAT 2409 Query 181839 TCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTT 181898 | || |||||||| || || || || || |||||||| | ||||||||||| || | Sbjct 2410 TTGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTCAT 2469 Query 181899 TCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 181958 | ||||| |||| |||||||| ||| |||| ||| |||| || || || || ||||| | Sbjct 2470 TTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGACAC 2529 Query 181959 TCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAA 182018 | || || ||||| |||||||| || |||||| | || || | ||| | || | ||| | Sbjct 2530 TTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGCGA 2589 Query 182019 TTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCA 182078 ||||||| | || || ||||| || || | |||| ||||| |||| |||||| Sbjct 2590 TTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTTCC 2649 Query 182079 AAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCT 182138 ||||| | ||||||||| ||||| || || |||||||| ||||| ||||| |||| Sbjct 2650 GTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTTCT 2709 Query 182139 GGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCT 182198 |||| ||||| |||||| | || || || ||| | ||| | || ||||||||||| | Sbjct 2710 GGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCTTT 2769 Query 182199 TTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACC 182258 | || ||||| | || | |||| | | ||| || | || | || || |||| Sbjct 2770 TCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGGTGTTGTAGGATTAGCACTTAACC 2829 Query 182259 TTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGA 182318 | ||||| || ||||| ||||| ||||| ||| | ||| | ||||| || ||||| || | Sbjct 2830 TCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGAAA 2889 Query 182319 CGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCG 182378 | |||||||| ||||| ||||| | || |||||| | ||||||||| | ||| | | Sbjct 2890 CATTCTACACTAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCAAG 2949 Query 182379 ATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 |||| || ||||| ||| |||| ||||||||||| ||| | || | || ||||| || Sbjct 2950 ATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCT 3007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610396655030760