Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq19 711 0.0
>seq19
Length=72585
Score = 711 bits (788), Expect = 0.0
Identities = 745/979 (76%), Gaps = 0/979 (0%)
Strand=Plus/Plus
Query 169411 TGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTAATGATTCCA 169470
||| | || ||||| | ||| | | || | |||||||| || || ||||||| ||
Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243
Query 169471 TGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 169530
||||| |||||| | || |||||||| ||||| ||||| || |||||||| |||
Sbjct 10244 ACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGAT 10303
Query 169531 ATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCT 169590
||||| || ||| | || |||||| | || || | |||| || |||||||||||||||
Sbjct 10304 ATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCT 10363
Query 169591 GGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCA 169650
||||| || | || |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 10364 GGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCA 10423
Query 169651 GCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTC 169710
|| || ||||||| ||| | || || ||||||||||| ||| | | | | ||||||
Sbjct 10424 GCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTC 10483
Query 169711 CTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATG 169770
| || || || | |||||||||| | ||||||| || || | | | |||||||||
Sbjct 10484 TTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATG 10543
Query 169771 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTA 169830
||||||||||| ||| || |||||||| || ||| | || ||| ||||||||| |
Sbjct 10544 CGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATC 10603
Query 169831 GTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACT 169890
||||||||| | ||||||||||| ||||||||||| ||||| || ||||| || || |||
Sbjct 10604 GTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACT 10663
Query 169891 TTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950
|||||||| ||| |||| ||||| || ||||| ||||| || ||||| || |||||||||
Sbjct 10664 TTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATG 10723
Query 169951 GCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTT 170010
|| || || || | ||||| || || | ||||| |||||||| |||||||| ||
Sbjct 10724 CTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTA 10783
Query 170011 ACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTC 170070
||||||||||| ||| | || || || ||| | ||||| ||| || || ||||||
Sbjct 10784 ACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTC 10843
Query 170071 GGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATC 170130
|||||||||||||| || |||||||| ||||| |||||||||||||| || |||||||||
Sbjct 10844 GGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATC 10903
Query 170131 TTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCT 170190
||||| || |||||||||||||||||| | || ||||||||||| ||| | | ||
Sbjct 10904 TTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCA 10963
Query 170191 GTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGT 170250
|| | | | ||||| || |||||||||| | || ||||| |||||| | || ||
Sbjct 10964 GTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGA 11023
Query 170251 TTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGAT 170310
|||||||| ||||| || || || ||| | |||||| | | ||||||| ||||
Sbjct 11024 TTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGAT 11083
Query 170311 GTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTC 170370
| ||||| | || ||| | ||||||||||| ||||| || | || || |||||||||
Sbjct 11084 ATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 11143
Query 170371 CCACTAGACCTAGCATCTG 170389
||||| ||||| |||||||
Sbjct 11144 CCACTTGACCTTGCATCTG 11162
Score = 711 bits (788), Expect = 0.0
Identities = 745/979 (76%), Gaps = 0/979 (0%)
Strand=Plus/Minus
Query 169411 TGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTAATGATTCCA 169470
||| | || ||||| | ||| | | || | |||||||| || || ||||||| ||
Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900
Query 169471 TGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 169530
||||| |||||| | || |||||||| ||||| ||||| || |||||||| |||
Sbjct 36899 ACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGAT 36840
Query 169531 ATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCT 169590
||||| || ||| | || |||||| | || || | |||| || |||||||||||||||
Sbjct 36839 ATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCT 36780
Query 169591 GGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCA 169650
||||| || | || |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 36779 GGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCA 36720
Query 169651 GCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTC 169710
|| || ||||||| ||| | || || ||||||||||| ||| | | | | ||||||
Sbjct 36719 GCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTC 36660
Query 169711 CTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATG 169770
| || || || | |||||||||| | ||||||| || || | | | |||||||||
Sbjct 36659 TTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATG 36600
Query 169771 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTA 169830
||||||||||| ||| || |||||||| || ||| | || ||| ||||||||| |
Sbjct 36599 CGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATC 36540
Query 169831 GTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACT 169890
||||||||| | ||||||||||| ||||||||||| ||||| || ||||| || || |||
Sbjct 36539 GTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACT 36480
Query 169891 TTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950
|||||||| ||| |||| ||||| || ||||| ||||| || ||||| || |||||||||
Sbjct 36479 TTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATG 36420
Query 169951 GCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTT 170010
|| || || || | ||||| || || | ||||| |||||||| |||||||| ||
Sbjct 36419 CTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTA 36360
Query 170011 ACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTC 170070
||||||||||| ||| | || || || ||| | ||||| ||| || || ||||||
Sbjct 36359 ACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTC 36300
Query 170071 GGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATC 170130
|||||||||||||| || |||||||| ||||| |||||||||||||| || |||||||||
Sbjct 36299 GGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATC 36240
Query 170131 TTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCT 170190
||||| || |||||||||||||||||| | || ||||||||||| ||| | | ||
Sbjct 36239 TTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCA 36180
Query 170191 GTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGT 170250
|| | | | ||||| || |||||||||| | || ||||| |||||| | || ||
Sbjct 36179 GTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGA 36120
Query 170251 TTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGAT 170310
|||||||| ||||| || || || ||| | |||||| | | ||||||| ||||
Sbjct 36119 TTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGAT 36060
Query 170311 GTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTC 170370
| ||||| | || ||| | ||||||||||| ||||| || | || || |||||||||
Sbjct 36059 ATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 36000
Query 170371 CCACTAGACCTAGCATCTG 170389
||||| ||||| |||||||
Sbjct 35999 CCACTTGACCTTGCATCTG 35981
Score = 540 bits (598), Expect = 1e-148
Identities = 747/1045 (71%), Gaps = 23/1045 (2%)
Strand=Plus/Plus
Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582
|| |||||||| | ||||||||| | ||| | |||||||| |||||| |||| |||
Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048
Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642
|| || ||||| | | || ||||||||| | || | ||||| ||||| || ||
Sbjct 2049 TCAGGAATTTTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACA 2108
Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702
|| ||||| || |||||||| ||||| ||| | || ||||| |||||||||||||||
Sbjct 2109 ACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAAC 2168
Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762
||||| ||| | ||||| || ||||| || |||| ||| ||||| |||||
Sbjct 2169 TTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTT 2228
Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822
|||||||| |||||||||||| || ||||||| || || || || |||||||
Sbjct 2229 TGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACA 2288
Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882
|| |||||| | || || | || ||| | || || || |||||| | |||||||| ||
Sbjct 2289 TTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATT 2348
Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942
||| | ||| || | || |||||||| | |||||||| || |||||| ||
Sbjct 2349 GCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTA 2408
Query 170943 TTCACTAGC-ATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001
|| || | | || || || || ||||| || || | |||||||| ||||| ||
Sbjct 2409 TT-TGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTC 2467
Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061
||| ||||| || | |||||| |||| || | ||| | ||||| ||||||||| ||
Sbjct 2468 ATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGAC 2527
Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121
| | || ||||| ||||||||||| || || || |||| || | |||| | | |||||
Sbjct 2528 ACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGC 2587
Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181
||||| || ||||| || |||||||| | | |||| || ||||
Sbjct 2588 GATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAG------------ATGGTGAT-- 2633
Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241
|||||| || |||||||| ||| | || || || | ||||| ||||||
Sbjct 2634 ---GGTTCAAA----CACTTTCCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTC 2686
Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301
||| | ||||||||| | |||||||||||||| || ||| | |||||||||||||| |
Sbjct 2687 AATGGTAACAGCAAACCGTTTCTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCG 2746
Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361
| | |||||| ||||| | ||||| ||||| | || | |||| ||| | | ||
Sbjct 2747 TTGGCTTCACTTCTTTATGCTTTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGG 2806
Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421
| | ||||| |||||||||||||| | |||||||| || ||||| |||||||| | ||
Sbjct 2807 TGTTGTAGGATTAGCACTTAACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGC 2866
Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481
||| ||||| || ||||| || || ||||||||||||||||| |||||||| ||||||||
Sbjct 2867 AGCTGAAGATCCTGAGTTTGAAACATTCTACACTAAGAATATTCTTCTTAACGAAGGTAT 2926
Query 171482 GAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541
| ||||||||| || | || || || ||||| ||| | |||||||| || || ||
Sbjct 2927 TCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGT 2986
Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566
| ||| | || ||||| ||||||
Sbjct 2987 ACTTCCACGTGGAAACGCTCTTTAA 3011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579212662436960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |