Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq19 711 0.0 >seq19 Length=72585 Score = 711 bits (788), Expect = 0.0 Identities = 745/979 (76%), Gaps = 0/979 (0%) Strand=Plus/Plus Query 169411 TGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTAATGATTCCA 169470 ||| | || ||||| | ||| | | || | |||||||| || || ||||||| || Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243 Query 169471 TGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 169530 ||||| |||||| | || |||||||| ||||| ||||| || |||||||| ||| Sbjct 10244 ACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGAT 10303 Query 169531 ATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCT 169590 ||||| || ||| | || |||||| | || || | |||| || ||||||||||||||| Sbjct 10304 ATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCT 10363 Query 169591 GGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCA 169650 ||||| || | || |||| |||||||||||||| |||||||||||||||||||||||| Sbjct 10364 GGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCA 10423 Query 169651 GCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTC 169710 || || ||||||| ||| | || || ||||||||||| ||| | | | | |||||| Sbjct 10424 GCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTC 10483 Query 169711 CTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATG 169770 | || || || | |||||||||| | ||||||| || || | | | ||||||||| Sbjct 10484 TTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATG 10543 Query 169771 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTA 169830 ||||||||||| ||| || |||||||| || ||| | || ||| ||||||||| | Sbjct 10544 CGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATC 10603 Query 169831 GTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACT 169890 ||||||||| | ||||||||||| ||||||||||| ||||| || ||||| || || ||| Sbjct 10604 GTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACT 10663 Query 169891 TTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950 |||||||| ||| |||| ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 10664 TTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATG 10723 Query 169951 GCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTT 170010 || || || || | ||||| || || | ||||| |||||||| |||||||| || Sbjct 10724 CTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTA 10783 Query 170011 ACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTC 170070 ||||||||||| ||| | || || || ||| | ||||| ||| || || |||||| Sbjct 10784 ACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTC 10843 Query 170071 GGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATC 170130 |||||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||| Sbjct 10844 GGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATC 10903 Query 170131 TTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCT 170190 ||||| || |||||||||||||||||| | || ||||||||||| ||| | | || Sbjct 10904 TTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCA 10963 Query 170191 GTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGT 170250 || | | | ||||| || |||||||||| | || ||||| |||||| | || || Sbjct 10964 GTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGA 11023 Query 170251 TTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGAT 170310 |||||||| ||||| || || || ||| | |||||| | | ||||||| |||| Sbjct 11024 TTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGAT 11083 Query 170311 GTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTC 170370 | ||||| | || ||| | ||||||||||| ||||| || | || || ||||||||| Sbjct 11084 ATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 11143 Query 170371 CCACTAGACCTAGCATCTG 170389 ||||| ||||| ||||||| Sbjct 11144 CCACTTGACCTTGCATCTG 11162 Score = 711 bits (788), Expect = 0.0 Identities = 745/979 (76%), Gaps = 0/979 (0%) Strand=Plus/Minus Query 169411 TGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTAATGATTCCA 169470 ||| | || ||||| | ||| | | || | |||||||| || || ||||||| || Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900 Query 169471 TGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 169530 ||||| |||||| | || |||||||| ||||| ||||| || |||||||| ||| Sbjct 36899 ACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGAT 36840 Query 169531 ATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCT 169590 ||||| || ||| | || |||||| | || || | |||| || ||||||||||||||| Sbjct 36839 ATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCT 36780 Query 169591 GGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCA 169650 ||||| || | || |||| |||||||||||||| |||||||||||||||||||||||| Sbjct 36779 GGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCA 36720 Query 169651 GCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTC 169710 || || ||||||| ||| | || || ||||||||||| ||| | | | | |||||| Sbjct 36719 GCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTC 36660 Query 169711 CTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATG 169770 | || || || | |||||||||| | ||||||| || || | | | ||||||||| Sbjct 36659 TTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATG 36600 Query 169771 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTA 169830 ||||||||||| ||| || |||||||| || ||| | || ||| ||||||||| | Sbjct 36599 CGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATC 36540 Query 169831 GTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACT 169890 ||||||||| | ||||||||||| ||||||||||| ||||| || ||||| || || ||| Sbjct 36539 GTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACT 36480 Query 169891 TTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950 |||||||| ||| |||| ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 36479 TTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATG 36420 Query 169951 GCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTT 170010 || || || || | ||||| || || | ||||| |||||||| |||||||| || Sbjct 36419 CTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTA 36360 Query 170011 ACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTC 170070 ||||||||||| ||| | || || || ||| | ||||| ||| || || |||||| Sbjct 36359 ACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTC 36300 Query 170071 GGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATC 170130 |||||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||| Sbjct 36299 GGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATC 36240 Query 170131 TTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCT 170190 ||||| || |||||||||||||||||| | || ||||||||||| ||| | | || Sbjct 36239 TTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCA 36180 Query 170191 GTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGT 170250 || | | | ||||| || |||||||||| | || ||||| |||||| | || || Sbjct 36179 GTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGA 36120 Query 170251 TTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGAT 170310 |||||||| ||||| || || || ||| | |||||| | | ||||||| |||| Sbjct 36119 TTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGAT 36060 Query 170311 GTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTC 170370 | ||||| | || ||| | ||||||||||| ||||| || | || || ||||||||| Sbjct 36059 ATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 36000 Query 170371 CCACTAGACCTAGCATCTG 170389 ||||| ||||| ||||||| Sbjct 35999 CCACTTGACCTTGCATCTG 35981 Score = 540 bits (598), Expect = 1e-148 Identities = 747/1045 (71%), Gaps = 23/1045 (2%) Strand=Plus/Plus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 || |||||||| | ||||||||| | ||| | |||||||| |||||| |||| ||| Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 || || ||||| | | || ||||||||| | || | ||||| ||||| || || Sbjct 2049 TCAGGAATTTTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACA 2108 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || ||||| || |||||||| ||||| ||| | || ||||| ||||||||||||||| Sbjct 2109 ACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAAC 2168 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||||| ||| | ||||| || ||||| || |||| ||| ||||| ||||| Sbjct 2169 TTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTT 2228 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 |||||||| |||||||||||| || ||||||| || || || || ||||||| Sbjct 2229 TGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACA 2288 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 || |||||| | || || | || ||| | || || || |||||| | |||||||| || Sbjct 2289 TTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATT 2348 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 ||| | ||| || | || |||||||| | |||||||| || |||||| || Sbjct 2349 GCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTA 2408 Query 170943 TTCACTAGC-ATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001 || || | | || || || || ||||| || || | |||||||| ||||| || Sbjct 2409 TT-TGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTC 2467 Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 ||| ||||| || | |||||| |||| || | ||| | ||||| ||||||||| || Sbjct 2468 ATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGAC 2527 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 | | || ||||| ||||||||||| || || || |||| || | |||| | | ||||| Sbjct 2528 ACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGC 2587 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181 ||||| || ||||| || |||||||| | | |||| || |||| Sbjct 2588 GATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAG------------ATGGTGAT-- 2633 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 |||||| || |||||||| ||| | || || || | ||||| |||||| Sbjct 2634 ---GGTTCAAA----CACTTTCCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTC 2686 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| | ||||||||| | |||||||||||||| || ||| | |||||||||||||| | Sbjct 2687 AATGGTAACAGCAAACCGTTTCTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCG 2746 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | | |||||| ||||| | ||||| ||||| | || | |||| ||| | | || Sbjct 2747 TTGGCTTCACTTCTTTATGCTTTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGG 2806 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | | ||||| |||||||||||||| | |||||||| || ||||| |||||||| | || Sbjct 2807 TGTTGTAGGATTAGCACTTAACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGC 2866 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 ||| ||||| || ||||| || || ||||||||||||||||| |||||||| |||||||| Sbjct 2867 AGCTGAAGATCCTGAGTTTGAAACATTCTACACTAAGAATATTCTTCTTAACGAAGGTAT 2926 Query 171482 GAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | ||||||||| || | || || || ||||| ||| | |||||||| || || || Sbjct 2927 TCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGT 2986 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 | ||| | || ||||| |||||| Sbjct 2987 ACTTCCACGTGGAAACGCTCTTTAA 3011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212662436960