Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq19 776 0.0 >seq19 Length=72585 Score = 776 bits (860), Expect = 0.0 Identities = 761/977 (78%), Gaps = 6/977 (1%) Strand=Plus/Plus Query 167872 TGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 167931 ||| | || |||||| | ||||| || || ||||||||||||| ||| | ||||| || Sbjct 10184 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 10243 Query 167932 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 167990 ||| | | |||||||| || || |||||||| || || | |||||||| ||||| || Sbjct 10244 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 10302 Query 167991 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 168050 ||||| || |||||||| || || |||| ||||| ||||| || |||||||||||||| Sbjct 10303 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 10362 Query 168051 TGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGC 168110 |||||| || ||||| | ||||| ||||| |||||||||||||| || ||||||||||| Sbjct 10363 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 10422 Query 168111 AGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTT 168170 ||| || || ||||||||| | || ||||||||||||| ||| || | || | |||||| Sbjct 10423 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 10482 Query 168171 CCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTAT 168230 | ||||||| || | | |||||||||| ||||| ||||| ||||| | |||||||| || Sbjct 10483 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 10542 Query 168231 GCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCT 168290 |||||| ||||| ||| || |||||||| || || || ||||| | || |||||| | Sbjct 10543 GCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCAT 10602 Query 168291 AGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAAC 168350 || || || ||||||| ||| ||||||||||| |||||| || || || || ||||| Sbjct 10603 CGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAAC 10662 Query 168351 ATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATAT 168410 ||||||| |||| | || ||||| ||||||||||| || || ||||| || ||||| || Sbjct 10663 TTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 10722 Query 168411 GCTCGGCGTTGCTGGGGTATTTGGTGG--CAGTTTGTTTAGTGCTATGCACGGAAGTTTG 168468 ||| || |||||||| ||||| ||||| || || || ||| |||||||| | Sbjct 10723 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTT--TTCTCTGCAATGCACGGTTCACTC 10780 Query 168469 GTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAG 168528 || ||||| |||||| | | ||||| ||||| | ||| || |||| || |||||| Sbjct 10781 GTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAG 10840 Query 168529 TTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTG 168588 ||||||||||||||||| || |||||||||||||| || || ||||||||||| ||| | Sbjct 10841 TTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTT 10900 Query 168589 ATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGG 168648 ||||||||||||||||||||||||||||| || || | ||||||||||| || ||| Sbjct 10901 ATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGG 10960 Query 168649 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAAC 168708 || || | || ||||||||||| || | || | || || ||||| |||||||| ||| Sbjct 10961 CCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAAC 11020 Query 168709 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 168768 || ||||||||||||||||| | | ||| | || ||||| | ||||| ||||| Sbjct 11021 GGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCT 11080 Query 168769 GATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 168828 ||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |||||| Sbjct 11081 GATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 11140 Query 168829 TTCCCACTCGATCTTGC 168845 |||||||| || ||||| Sbjct 11141 TTCCCACTTGACCTTGC 11157 Score = 776 bits (860), Expect = 0.0 Identities = 761/977 (78%), Gaps = 6/977 (1%) Strand=Plus/Minus Query 167872 TGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 167931 ||| | || |||||| | ||||| || || ||||||||||||| ||| | ||||| || Sbjct 36959 TGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCT 36900 Query 167932 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 167990 ||| | | |||||||| || || |||||||| || || | |||||||| ||||| || Sbjct 36899 ACTTTACTTACAGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGA 36841 Query 167991 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 168050 ||||| || |||||||| || || |||| ||||| ||||| || |||||||||||||| Sbjct 36840 TATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTC 36781 Query 168051 TGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGC 168110 |||||| || ||||| | ||||| ||||| |||||||||||||| || ||||||||||| Sbjct 36780 TGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGC 36721 Query 168111 AGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTT 168170 ||| || || ||||||||| | || ||||||||||||| ||| || | || | |||||| Sbjct 36720 AGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTT 36661 Query 168171 CCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTAT 168230 | ||||||| || | | |||||||||| ||||| ||||| ||||| | |||||||| || Sbjct 36660 CTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAAT 36601 Query 168231 GCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCT 168290 |||||| ||||| ||| || |||||||| || || || ||||| | || |||||| | Sbjct 36600 GCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCAT 36541 Query 168291 AGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAAC 168350 || || || ||||||| ||| ||||||||||| |||||| || || || || ||||| Sbjct 36540 CGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAAC 36481 Query 168351 ATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATAT 168410 ||||||| |||| | || ||||| ||||||||||| || || ||||| || ||||| || Sbjct 36480 TTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 36421 Query 168411 GCTCGGCGTTGCTGGGGTATTTGGTGG--CAGTTTGTTTAGTGCTATGCACGGAAGTTTG 168468 ||| || |||||||| ||||| ||||| || ||| | ||| |||||||| | Sbjct 36420 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTC--TGCAATGCACGGTTCACTC 36363 Query 168469 GTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAG 168528 || ||||| |||||| | | ||||| ||||| | ||| || |||| || |||||| Sbjct 36362 GTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAG 36303 Query 168529 TTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTG 168588 ||||||||||||||||| || |||||||||||||| || || ||||||||||| ||| | Sbjct 36302 TTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTT 36243 Query 168589 ATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGG 168648 ||||||||||||||||||||||||||||| || || | ||||||||||| || ||| Sbjct 36242 ATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGG 36183 Query 168649 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAAC 168708 || || | || ||||||||||| || | || | || || ||||| |||||||| ||| Sbjct 36182 CCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAAC 36123 Query 168709 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 168768 || ||||||||||||||||| | | ||| | || ||||| | ||||| ||||| Sbjct 36122 GGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCT 36063 Query 168769 GATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 168828 ||| | | ||||| ||| || ||||||||||| ||||| ||||||||||| |||||| Sbjct 36062 GATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 36003 Query 168829 TTCCCACTCGATCTTGC 168845 |||||||| || ||||| Sbjct 36002 TTCCCACTTGACCTTGC 35986 Score = 563 bits (624), Expect = 1e-155 Identities = 735/1012 (73%), Gaps = 6/1012 (1%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 || |||||||| || || || || || |||||| | |||||||| || | || || || Sbjct 2007 GACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGGTCAGGAATT-TTATTATT 2065 Query 169379 CCCAC-TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTG 169437 |||| ||| || |||| |||| || ||| | ||||| ||| | || || ||||| || Sbjct 2066 CCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAACAACATTCGTAACTTCATG 2125 Query 169438 GTACACCCACGGACTCGCT--TCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCT 169495 |||||| ||||| | || | || ||| | || || ||||||||| || | || Sbjct 2126 GTACACACACGGTTTAGCAAGTTCA--TACCTTGAGGGATGTAACTTCCTTACATCGGCA 2183 Query 169496 GTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCA 169555 || ||||| || || ||||| |||||||| || | || ||||| ||||||||| Sbjct 2184 GTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCTTTGGGGACCAGAAGCA 2243 Query 169556 CAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCAT 169615 ||||| || ||| || |||||||| | ||||| | |||| || ||||||||||| Sbjct 2244 CAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGACATTCGTAGCACTTCAC 2303 Query 169616 GGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGC 169675 |||||||| | ||| || || || ||||| | || |||||| | |||||| | Sbjct 2304 GGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAATTGCACGTGCAGTACAA 2363 Query 169676 ATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTT 169735 || ||||| || || || ||||||||||| | ||||| ||||||||||| ||| || Sbjct 2364 ATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGTATTTGTATCTGTATTC 2423 Query 169736 CTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 ||||| |||||||||||||| || |||||||||||| || || ||||| ||| | | | Sbjct 2424 CTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTCATTTGGTGTAGCGGGA 2483 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 169855 || ||| | ||| | | ||| | ||||| |||||||||||||| | || ||||||||| Sbjct 2484 ATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCCATTCCAC 2543 Query 169856 ATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACA 169915 |||||||| ||||| || | | || | |||| | |||| ||| || || || | || Sbjct 2544 ATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGCGATTCACGGAGCAACT 2603 Query 169916 GTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCG 169975 |||||||||||| | | ||||| ||||| |||| |||||| || ||| | | Sbjct 2604 GTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTTCCGTGCATTTAACCCA 2663 Query 169976 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 170035 || || | ||||||||||| || ||||| || |||||||| |||||||| ||||| ||| Sbjct 2664 ACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAGATTTTC 2723 Query 170036 GGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 170095 ||| | || || |||||||||||||||||||| || || ||| | || || ||||| | Sbjct 2724 GGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCTTTTCGTACCTGTAACA 2783 Query 170096 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 170155 || | |||| || | |||| || | || | || || || || ||||| ||||| Sbjct 2784 GGGTTATGGATGTCAGCACTTGGTGTTGTAGGATTAGCACTTAACCTCCGTGCATACGAC 2843 Query 170156 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 170215 ||||| || |||||| | ||||| |||||||| || ||||| || |||||||| || Sbjct 2844 TTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGAAACATTCTACACTAAG 2903 Query 170216 AACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAA 170275 || || || | || ||||| ||||||||||| ||||| || ||||| || |||||| Sbjct 2904 AATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAA 2963 Query 170276 AACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACTGTGATCCA 170327 ||| | | ||||| || || || ||||| | || ||||| || | || || Sbjct 2964 AACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAATTCA 3015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473463562520