Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq19 719 0.0
>seq19
Length=72585
Score = 719 bits (796), Expect = 0.0
Identities = 733/963 (76%), Gaps = 2/963 (0%)
Strand=Plus/Plus
Query 167109 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCA 167168
||| | |||||||| || ||||||||||||| || | ||||||||||| || ||| ||
Sbjct 10196 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACA 10255
Query 167169 GCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTAT 167227
|||| | || || |||||| | || || | | |||||||||||| || |||||||||||
Sbjct 10256 GCAA-CTTCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTAT 10314
Query 167228 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 167287
||| || ||||| |||| ||||| ||||| || |||||||||||||||||||| || |
Sbjct 10315 CCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAAT 10374
Query 167288 TCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGA 167347
||| | ||||| ||||| || ||||||||||| || |||||||||||||| | || ||
Sbjct 10375 CCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGA 10434
Query 167348 CGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCAT 167407
|||||| | ||||| |||||||||| ||| || | || | |||||| | || || ||
Sbjct 10435 TGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAAT 10494
Query 167408 CTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGAT 167467
| | | || ||||||||||||||||| || |||| |||| | || |||||||| |||||
Sbjct 10495 TTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGAT 10554
Query 167468 CTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTT 167527
||| || ||||||||||| || || |||||| | ||||||||| |||| || || |
Sbjct 10555 TGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAAT 10614
Query 167528 CGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACAT 167587
|||||| |||||||||||||| | |||||||||||||| ||||| || ||||||| |||
Sbjct 10615 CGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCAT 10674
Query 167588 GCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGC 167647
| | || ||||| || |||||||||||||| |||||||| ||||| ||||| || |||||
Sbjct 10675 GATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGC 10734
Query 167648 TGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCT 167707
||| |||||||| ||||| || ||| ||||||||||||||| || || || || || ||
Sbjct 10735 TGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCT 10794
Query 167708 GGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGA 167767
| ||||| || || || | ||||| ||| || ||||||||||| || |||||
Sbjct 10795 CATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTCGGACAAGAAGA 10854
Query 167768 AGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 167827
|||||| || |||||||| ||||| || ||||||||||| || || ||||||||||||||
Sbjct 10855 AGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGC 10914
Query 167828 ATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTAT 167887
|| ||||||||||| || || || ||||||||| | ||| ||||| || | || ||
Sbjct 10915 TTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAAT 10974
Query 167888 CTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAA 167947
||||| |||||||| ||||| |||||||||||
Sbjct 10975 CTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAA 11034
Query 167948 CCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCG 168007
||||||| | | ||| || || | || ||||| || | | |||||
Sbjct 11035 CCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCG 11094
Query 168008 TGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 168067
|||| || ||||||||||| |||||||||||||| |||||||||||||| || |||||
Sbjct 11095 TGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCT 11154
Query 168068 TGC 168070
|||
Sbjct 11155 TGC 11157
Score = 719 bits (796), Expect = 0.0
Identities = 733/963 (76%), Gaps = 2/963 (0%)
Strand=Plus/Minus
Query 167109 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCA 167168
||| | |||||||| || ||||||||||||| || | ||||||||||| || ||| ||
Sbjct 36947 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGATCCCTACTTTACTTACA 36888
Query 167169 GCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTAT 167227
||||| || || |||||| | || || | | |||||||||||| || |||||||||||
Sbjct 36887 GCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTAT 36829
Query 167228 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 167287
||| || ||||| |||| ||||| ||||| || |||||||||||||||||||| || |
Sbjct 36828 CCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAAT 36769
Query 167288 TCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGA 167347
||| | ||||| ||||| || ||||||||||| || |||||||||||||| | || ||
Sbjct 36768 CCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTGA 36709
Query 167348 CGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCAT 167407
|||||| | ||||| |||||||||| ||| || | || | |||||| | || || ||
Sbjct 36708 TGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAAT 36649
Query 167408 CTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGAT 167467
| | | || ||||||||||||||||| || |||| |||| | || |||||||| |||||
Sbjct 36648 TTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGAT 36589
Query 167468 CTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTT 167527
||| || ||||||||||| || || |||||| | ||||||||| |||| || || |
Sbjct 36588 TGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAAT 36529
Query 167528 CGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACAT 167587
|||||| |||||||||||||| | |||||||||||||| ||||| || ||||||| |||
Sbjct 36528 CGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCAT 36469
Query 167588 GCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGC 167647
| | || ||||| || |||||||||||||| |||||||| ||||| ||||| || |||||
Sbjct 36468 GATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGC 36409
Query 167648 TGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCT 167707
||| |||||||| ||||| || ||| ||||||||||||||| || || || || || ||
Sbjct 36408 TGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTCT 36349
Query 167708 GGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGA 167767
| ||||| || || || | ||||| ||| || ||||||||||| || |||||
Sbjct 36348 CATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTCGGACAAGAAGA 36289
Query 167768 AGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 167827
|||||| || |||||||| ||||| || ||||||||||| || || ||||||||||||||
Sbjct 36288 AGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACGC 36229
Query 167828 ATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTAT 167887
|| ||||||||||| || || || ||||||||| | ||| ||||| || | || ||
Sbjct 36228 TTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAAT 36169
Query 167888 CTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAA 167947
||||| |||||||| ||||| |||||||||||
Sbjct 36168 CTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCAA 36109
Query 167948 CCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCG 168007
||||||| | | ||| || || | || ||||| || | | |||||
Sbjct 36108 CCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACCG 36049
Query 168008 TGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 168067
|||| || ||||||||||| |||||||||||||| |||||||||||||| || |||||
Sbjct 36048 TGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCT 35989
Query 168068 TGC 168070
|||
Sbjct 35988 TGC 35986
Score = 607 bits (672), Expect = 9e-169
Identities = 748/1020 (73%), Gaps = 2/1020 (0%)
Strand=Plus/Plus
Query 168477 GGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGG 168536
|| ||||| || | | || ||||||||||| || ||||||||||| || || ||||||
Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048
Query 168537 TCTGGACTTCTTCTTTTTCCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGAC 168595
|| ||| || || || |||||| ||| || |||| |||| || ||| ||||||| ||
Sbjct 2049 TCAGGAATT-TTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAAC 2107
Query 168596 TGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAA 168655
| ||||| || ||||| || ||||| || |||||||| || || ||||| ||
Sbjct 2108 AACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAA 2167
Query 168656 CTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCT 168715
||| ||||| ||||||| || ||| | | ||||| ||| || ||||| || ||
Sbjct 2168 CTTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCT 2227
Query 168716 CTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGC 168775
||||| || || |||||||| || ||| | |||||||| ||||| ||| | ||| |
Sbjct 2228 TTGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGAC 2287
Query 168776 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACT 168835
|| || || || ||||| || |||| ||||||| || ||||| ||||| |||||| |
Sbjct 2288 ATTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAAT 2347
Query 168836 GGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 168895
|||||| | || ||||| ||||| || ||||| ||||| | |||||||||||
Sbjct 2348 TGCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGT 2407
Query 168896 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 168955
||||| || || || || ||||| || || ||||| | ||||| || || || ||
Sbjct 2408 ATTTGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTC 2467
Query 168956 TTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 169015
|| || || | | ||| ||||| ||| |||| ||| | ||||| ||||| ||||||||
Sbjct 2468 ATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGAC 2527
Query 169016 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGC 169075
||| || ||||| || |||||||| ||||| ||| | | |||| ||| | |||| |||
Sbjct 2528 ACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGC 2587
Query 169076 CATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135
||||| || | || |||||||| || || | |||||||||| |||| |||||
Sbjct 2588 GATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTT 2647
Query 169136 CAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTT 169195
| |||||| || ||||| | || ||||| || |||||||| || |||||||||||
Sbjct 2648 CCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTT 2707
Query 169196 CTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 169255
|||||| ||||| || ||| | || ||| ||| ||| | ||| | || |||||||||||
Sbjct 2708 CTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCT 2767
Query 169256 GTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 169315
|| || ||||| | || | |||| | | ||| || | || | || || ||
Sbjct 2768 TTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGGTGTTGTAGGATTAGCACTTAA 2827
Query 169316 CCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGA 169375
||| ||||| || ||||| || || ||||||||| | ||||| |||||||| ||||||||
Sbjct 2828 CCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGA 2887
Query 169376 GACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTAT 169435
|| |||||||| ||||| || || | ||||||||| ||||||||||| | ||| ||
Sbjct 2888 AACATTCTACACTAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCA 2947
Query 169436 TGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495
||||| |||||||| ||| |||| ||||||||||| |||||||| || || || || ||
Sbjct 2948 AGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCT 3007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560607866855600
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