Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq19 796 0.0 >seq19 Length=72585 Score = 796 bits (882), Expect = 0.0 Identities = 769/986 (78%), Gaps = 1/986 (0%) Strand=Plus/Plus Query 215286 GGGACGAGTTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTG 215345 |||||| |||||| ||| ||||||| ||||| || ||| | ||| | |||||||| | Sbjct 10168 GGGACGT-TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCG 10226 Query 215346 GTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCG 215405 | || | ||||| ||| | || |||| || | |||||||||||||| || | Sbjct 10227 GAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTG 10286 Query 215406 CTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATG 215465 |||| |||||||| |||||||| || ||| | |||||||| |||| || | ||||| | Sbjct 10287 CTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACG 10346 Query 215466 GTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCT 215525 | ||||||||||||||||||||||| | |||| || ||||| |||||| | ||||||| Sbjct 10347 GAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCT 10406 Query 215526 ACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAAC 215585 |||| |||||||||||||| | |||| || ||||| ||||| ||||| |||| ||| | Sbjct 10407 ACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGC 10466 Query 215586 TGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTT 215645 | | | | |||||| |||| || |||| | ||||| || | ||||||| |||| Sbjct 10467 TTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTT 10526 Query 215646 CTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTG 215705 ||| | | ||||| ||| | |||||||| ||| |||||||| || |||||| | || | Sbjct 10527 CTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAG 10586 Query 215706 CCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCAC 215765 | || |||||| | || || ||| |||||||||||||||||||||||| ||||| | Sbjct 10587 CAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTC 10646 Query 215766 TTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGA 215825 |||| || |||||||| ||||||| |||| | || |||||||||||||||||||| || | Sbjct 10647 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 10706 Query 215826 TGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAA 215885 ||||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||||| Sbjct 10707 TGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAA 10766 Query 215886 TGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGA 215945 ||||||||||||| || || || ||||| ||| | ||||| |||||| | || ||| | Sbjct 10767 TGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAA 10826 Query 215946 ACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTT 216005 || || ||||||||||||||||| || || || ||||||||||||||||||||||||| Sbjct 10827 ACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTT 10886 Query 216006 ACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCT 216065 |||| || || || |||||||||||||| || |||||||||||| | || ||||||| Sbjct 10887 ACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCT 10946 Query 216066 TCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGG 216125 |||| ||| | || || || | |||||| || || |||||| | |||||||||| Sbjct 10947 TCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGG 11006 Query 216126 CGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTA 216185 | |||||||||||||| |||||||||||||||||||| ||||| || || || | Sbjct 11007 CTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAA 11066 Query 216186 TTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGC 216245 || || ||||| || | | ||| | || || |||||||||||||||||||||| Sbjct 11067 TTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGC 11126 Query 216246 GTAACGCTCACAACTTCCCATTAGAC 216271 |||||||||||||||||||| | ||| Sbjct 11127 GTAACGCTCACAACTTCCCACTTGAC 11152 Score = 796 bits (882), Expect = 0.0 Identities = 769/986 (78%), Gaps = 1/986 (0%) Strand=Plus/Minus Query 215286 GGGACGAGTTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTG 215345 |||||| |||||| ||| ||||||| ||||| || ||| | ||| | |||||||| | Sbjct 36975 GGGACGT-TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCG 36917 Query 215346 GTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCG 215405 | || | ||||| ||| | || |||| || | |||||||||||||| || | Sbjct 36916 GAGTATTAATGATCCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTG 36857 Query 215406 CTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATG 215465 |||| |||||||| |||||||| || ||| | |||||||| |||| || | ||||| | Sbjct 36856 CTGCTCCTCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACG 36797 Query 215466 GTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCT 215525 | ||||||||||||||||||||||| | |||| || ||||| |||||| | ||||||| Sbjct 36796 GAAACAACATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCT 36737 Query 215526 ACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAAC 215585 |||| |||||||||||||| | |||| || ||||| ||||| ||||| |||| ||| | Sbjct 36736 ACCCAATCTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGC 36677 Query 215586 TGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTT 215645 | | | | |||||| |||| || |||| | ||||| || | ||||||| |||| Sbjct 36676 TTATCGTATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTT 36617 Query 215646 CTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTG 215705 ||| | | ||||| ||| | |||||||| ||| |||||||| || |||||| | || | Sbjct 36616 CTTTCCGTTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAG 36557 Query 215706 CCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCAC 215765 | || |||||| | || || ||| |||||||||||||||||||||||| ||||| | Sbjct 36556 CAACAGCTGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTC 36497 Query 215766 TTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGA 215825 |||| || |||||||| ||||||| |||| | || |||||||||||||||||||| || | Sbjct 36496 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 36437 Query 215826 TGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAA 215885 ||||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||||| Sbjct 36436 TGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAA 36377 Query 215886 TGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGA 215945 ||||||||||||| || || || ||||| ||| | ||||| |||||| | || ||| | Sbjct 36376 TGCACGGTTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTGCAA 36317 Query 215946 ACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTT 216005 || || ||||||||||||||||| || || || ||||||||||||||||||||||||| Sbjct 36316 ACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTT 36257 Query 216006 ACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCT 216065 |||| || || || |||||||||||||| || |||||||||||| | || ||||||| Sbjct 36256 ACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCT 36197 Query 216066 TCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGG 216125 |||| ||| | || || || | |||||| || || |||||| | |||||||||| Sbjct 36196 TCCTCGCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGG 36137 Query 216126 CGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTA 216185 | |||||||||||||| |||||||||||||||||||| ||||| || || || | Sbjct 36136 CTTTCAACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAA 36077 Query 216186 TTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGC 216245 || || ||||| || | | ||| | || || |||||||||||||||||||||| Sbjct 36076 TTAACACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGC 36017 Query 216246 GTAACGCTCACAACTTCCCATTAGAC 216271 |||||||||||||||||||| | ||| Sbjct 36016 GTAACGCTCACAACTTCCCACTTGAC 35991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745081423043120