Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8 147 5e-30 seq4 131 4e-25 seq15 127 5e-24 seq6 91.5 3e-13 >seq8 Length=1276107 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || || ||||| | ||||| ||| Sbjct 455433 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCG 455492 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 455493 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 455552 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| || || || ||||| | ||||| Sbjct 455553 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 455612 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 455613 CCGGTGAGAGTCTTGACGAAGATCTGCAT 455641 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || || ||||| | ||||| ||| Sbjct 455661 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCG 455720 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 455721 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 455780 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| || || || ||||| | ||||| Sbjct 455781 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 455840 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 455841 CCGGTGAGAGTCTTGACGAAGATCTGCAT 455869 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || || ||||| | ||||| ||| Sbjct 455889 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCG 455948 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 455949 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 456008 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| || || || ||||| | ||||| Sbjct 456009 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 456068 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 456069 CCGGTGAGAGTCTTGACGAAGATCTGCAT 456097 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || || ||||| | || || ||| Sbjct 456117 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCG 456176 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 456177 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 456236 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| || || || ||||| | ||||| Sbjct 456237 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 456296 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 456297 CCGGTGAGAGTCTTGACGAAGATCTGCAT 456325 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || || ||||| | || || ||| Sbjct 456345 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCG 456404 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| || |||||||| || || || ||||| || || |||||| Sbjct 456405 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 456452 >seq4 Length=1584431 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || || || || | ||||| ||| Sbjct 22754 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCG 22695 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 22694 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 22635 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| || ||||| | ||||| Sbjct 22634 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTA 22575 Query 195112 CCTGT 195116 || || Sbjct 22574 CCGGT 22570 >seq15 Length=739136 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || || ||||| | || || ||| Sbjct 297690 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCG 297749 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 297750 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 297809 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||||| || ||||| | ||||| Sbjct 297810 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTG 297869 Query 195112 CCTGT 195116 || || Sbjct 297870 CCGGT 297874 >seq6 Length=1431126 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| || || || || | || || ||| Sbjct 1414383 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCCTCG 1414324 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| || |||||||| || || || ||||| || || |||||| Sbjct 1414323 AGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCT 1414276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481329910573