Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-23
>seq1
Length=2053059
Score = 127 bits (140), Expect = 2e-23
Identities = 312/471 (66%), Gaps = 4/471 (1%)
Strand=Plus/Plus
Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTT 552174
|||||||||| ||||| || || || || ||||||||||| ||| | | ||||
Sbjct 532519 ATGAAATTGTCCTTGTCGGCGGGTCAACTCGAATTCCTAAAGTTCAAGCGCTACTAAGAG 532578
Query 552175 CTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATG 552234
||||| | |||||| || ||| | | || || || || || || ||||| ||||
Sbjct 532579 AATATTTTGACGGTAAAGAACCAAACAAGGGAGTCAACCCCGACGAAGCAGTTGCATATG 532638
Query 552235 GTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTG 552294
| || || | |||| || || || ||||| || || || || | || | ||
Sbjct 532639 GCGCAGCTGTGCAAGGAGGAATCCTCTCTGGGGAAGGTGGAGATGAAACAAAAGACATCT 532698
Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354
| ||| | |||||| |||| || ||| || | ||||| || ||||| ||||||| |
Sbjct 532699 TGCTTCTTGATGTTGCTCCCCTCACTCAGGGAATCGAAACCGTCGGAGGAGTTATGACAA 532758
Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414
| || || ||| || ||| || || |||||||| | |||| | || ||
Sbjct 532759 AGCTGATTCCTAGGAACACTGTGATCCCGACCAAAAAATCACAGACATTTACCACTTACC 532818
Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474
||| |||||| |||| | |||||| | || || || || || | || ||||
Sbjct 532819 AAGACAATCAACAGACTGTGATGATTCAAGTGTTCGAGGGGGAGCGAGCCATGACGAAAG 532878
Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGT--ATTCCTCCTGCTCCTCGTGGAGT 552532
| ||| ||| ||| || | || | | | || ||||| |||||||| || || ||
Sbjct 532879 ACAATCATCTACTCGGAAAGTTCGAGCT--CACGTCCATTCCCCCTGCTCCGCGCGGTGT 532936
Query 552533 ACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583
|| ||||| || || ||||| || || || || ||||| || ||||||||
Sbjct 532937 TCCTCAAATCGAGGTAACTTTTGAAATTGACGCAAATGGCATATTGAATGT 532987
Score = 111 bits (122), Expect = 1e-18
Identities = 203/295 (69%), Gaps = 17/295 (6%)
Strand=Plus/Minus
Query 368782 CGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATA 368841
|| ||||||| || || |||||||||||||| || || ||||||| || | ||
Sbjct 1325629 CGCGTTGAAGATGTATTTGATTGCTGGTTTGAGTCTGGAGCTATGCCATACGCCCAGCAG 1325570
Query 368842 CATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTT 368901
|| ||||||||||| ||| | ||||| || | || ||| || || | |||||
Sbjct 1325569 CACTATCCATTTGAAAACAAGGATTACTTCGAAA--GAAAAATTTTCCCTG-CAAATTTT 1325513
Query 368902 GTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACA 368961
|| ||||| |||||||||| || ||||||||||| ||||| | || ||||||||
Sbjct 1325512 GTCGCAGAAGGTCTTGATCAAACCCGGGGTTGGTTTTACACCCTGATGGTTTTATCCACT 1325453
Query 368962 GCTATTTTCGATAAACCGGCTTTTAAAAA-------TGTAATAGTAACTGGTATTGTTAA 369014
|| |||| || || || ||| |||| || ||| | ||| || |||
Sbjct 1325452 GCACTTTTTGACCGCCCTGCATTTCAAAACCTCGTGTGCAATGG--ACTCGTGTTG---- 1325399
Query 369015 TGCATCTGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCGATCCTAAT 369069
|| || ||||| |||| ||||| |||||| | |||||| | |||||||||
Sbjct 1325398 -GCCTCAGATGGGAAAAAAATGTCGAAAAGTCTGAAAAATTATCCAGATCCTAAT 1325345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029294995194310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |