Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-23 >seq1 Length=2053059 Score = 127 bits (140), Expect = 2e-23 Identities = 312/471 (66%), Gaps = 4/471 (1%) Strand=Plus/Plus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTT 552174 |||||||||| ||||| || || || || ||||||||||| ||| | | |||| Sbjct 532519 ATGAAATTGTCCTTGTCGGCGGGTCAACTCGAATTCCTAAAGTTCAAGCGCTACTAAGAG 532578 Query 552175 CTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATG 552234 ||||| | |||||| || ||| | | || || || || || || ||||| |||| Sbjct 532579 AATATTTTGACGGTAAAGAACCAAACAAGGGAGTCAACCCCGACGAAGCAGTTGCATATG 532638 Query 552235 GTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTG 552294 | || || | |||| || || || ||||| || || || || | || | || Sbjct 532639 GCGCAGCTGTGCAAGGAGGAATCCTCTCTGGGGAAGGTGGAGATGAAACAAAAGACATCT 532698 Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 | ||| | |||||| |||| || ||| || | ||||| || ||||| ||||||| | Sbjct 532699 TGCTTCTTGATGTTGCTCCCCTCACTCAGGGAATCGAAACCGTCGGAGGAGTTATGACAA 532758 Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 | || || ||| || ||| || || |||||||| | |||| | || || Sbjct 532759 AGCTGATTCCTAGGAACACTGTGATCCCGACCAAAAAATCACAGACATTTACCACTTACC 532818 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 ||| |||||| |||| | |||||| | || || || || || | || |||| Sbjct 532819 AAGACAATCAACAGACTGTGATGATTCAAGTGTTCGAGGGGGAGCGAGCCATGACGAAAG 532878 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGT--ATTCCTCCTGCTCCTCGTGGAGT 552532 | ||| ||| ||| || | || | | | || ||||| |||||||| || || || Sbjct 532879 ACAATCATCTACTCGGAAAGTTCGAGCT--CACGTCCATTCCCCCTGCTCCGCGCGGTGT 532936 Query 552533 ACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 || ||||| || || ||||| || || || || ||||| || |||||||| Sbjct 532937 TCCTCAAATCGAGGTAACTTTTGAAATTGACGCAAATGGCATATTGAATGT 532987 Score = 111 bits (122), Expect = 1e-18 Identities = 203/295 (69%), Gaps = 17/295 (6%) Strand=Plus/Minus Query 368782 CGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATA 368841 || ||||||| || || |||||||||||||| || || ||||||| || | || Sbjct 1325629 CGCGTTGAAGATGTATTTGATTGCTGGTTTGAGTCTGGAGCTATGCCATACGCCCAGCAG 1325570 Query 368842 CATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTT 368901 || ||||||||||| ||| | ||||| || | || ||| || || | ||||| Sbjct 1325569 CACTATCCATTTGAAAACAAGGATTACTTCGAAA--GAAAAATTTTCCCTG-CAAATTTT 1325513 Query 368902 GTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACA 368961 || ||||| |||||||||| || ||||||||||| ||||| | || |||||||| Sbjct 1325512 GTCGCAGAAGGTCTTGATCAAACCCGGGGTTGGTTTTACACCCTGATGGTTTTATCCACT 1325453 Query 368962 GCTATTTTCGATAAACCGGCTTTTAAAAA-------TGTAATAGTAACTGGTATTGTTAA 369014 || |||| || || || ||| |||| || ||| | ||| || ||| Sbjct 1325452 GCACTTTTTGACCGCCCTGCATTTCAAAACCTCGTGTGCAATGG--ACTCGTGTTG---- 1325399 Query 369015 TGCATCTGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCGATCCTAAT 369069 || || ||||| |||| ||||| |||||| | |||||| | ||||||||| Sbjct 1325398 -GCCTCAGATGGGAAAAAAATGTCGAAAAGTCTGAAAAATTATCCAGATCCTAAT 1325345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294995194310