Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq19 536 4e-148
>seq19
Length=72585
Score = 536 bits (594), Expect = 4e-148
Identities = 716/989 (72%), Gaps = 6/989 (1%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|||||| ||| |||| |||||||||||||| || | || |||||||| || |
Sbjct 10175 TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTA 10234
Query 25862 ATGATACCCTGCTT-ACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACC 25920
||||| |||| ||| ||| |||| ||| || || || | || || || || || ||
Sbjct 10235 ATGAT-CCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCC 10293
Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980
||||||||||| ||||| || ||||||||||| || || || | ||||||||||||||
Sbjct 10294 TCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAA 10353
Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040
|| || || || || || |||| | |||||||| |||||||| || || ||||| ||
Sbjct 10354 CATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAAT 10413
Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100
||||||||| | | || || |||||||| ||||| || || || || || || || |
Sbjct 10414 CTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGT 10473
Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160
| |||||||| || ||| | |||| || | ||||||| || |||| | |
Sbjct 10474 ATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCG 10533
Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220
|||||||| | || ||||| ||| || || | || || || | ||||| ||
Sbjct 10534 TTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGC 10593
Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280
|| ||| | || || || |||| || || ||| |||||||||||||||||||||
Sbjct 10594 TGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTAT 10653
Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340
||||| ||||| ||||| ||| |||||||||| || || || || || || ||||||||
Sbjct 10654 TTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10713
Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400
|||||| ||| |||||||||||| || |||||||| | |||||| |||| ||||||||
Sbjct 10714 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGG 10773
Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGA--AGTCTCACAGAATTAT 26458
| || ||||| || || || || || || ||| | ||||| || | |
Sbjct 10774 TTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTG-CAAACGCA- 10831
Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518
|| || ||||| || ||||| |||||||| || || || || ||||||||||| |||||
Sbjct 10832 GGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTC 10891
Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578
|| | | || || || || || || || ||| ||||| || || ||||| ||
Sbjct 10892 GGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTC 10951
Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638
|| | ||||| || | || || ||| | ||| |||||||||| | || ||||| ||
Sbjct 10952 GCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTC 11011
Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698
||||| || || || ||||| |||||||| ||||||||| || ||| ||||
Sbjct 11012 AACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAAC 11071
Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758
|||||||||||| | ||||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 11072 ACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAAC 11131
Query 26759 GCTCATAACTTTCCACTTGACTTAGCATC 26787
||||| ||||| ||||||||| | |||||
Sbjct 11132 GCTCACAACTTCCCACTTGACCTTGCATC 11160
Score = 536 bits (594), Expect = 4e-148
Identities = 716/989 (72%), Gaps = 6/989 (1%)
Strand=Plus/Minus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|||||| ||| |||| |||||||||||||| || | || |||||||| || |
Sbjct 36968 TTTTGTTCATGGATTACTTCAACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTA 36909
Query 25862 ATGATACCCTGCTT-ACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACC 25920
||||| |||| ||| ||| |||| ||| || || || | || || || || || ||
Sbjct 36908 ATGAT-CCCTACTTTACTTACAGCAACTTCAGTATTCATCGTAGCATTTATTGCTGCTCC 36850
Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980
||||||||||| ||||| || ||||||||||| || || || | ||||||||||||||
Sbjct 36849 TCCTGTAGATATCGATGGTATCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAA 36790
Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040
|| || || || || || |||| | |||||||| |||||||| || || ||||| ||
Sbjct 36789 CATCATCTCTGGTGCTGTAATCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAAT 36730
Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100
||||||||| | | || || |||||||| ||||| || || || || || || || |
Sbjct 36729 CTGGGAAGCAGCTTCTCTTGATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGT 36670
Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160
| |||||||| || ||| | |||| || | ||||||| || |||| | |
Sbjct 36669 ATGTCACTTCTTCATCGGAATTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCG 36610
Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220
|||||||| | || ||||| ||| || || | || || || | ||||| ||
Sbjct 36609 TTTAGGAATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGC 36550
Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280
|| ||| | || || || |||| || || ||| |||||||||||||||||||||
Sbjct 36549 TGTATTCATCGTATACCCAATCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTAT 36490
Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340
||||| ||||| ||||| ||| |||||||||| || || || || || || ||||||||
Sbjct 36489 TTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 36430
Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400
|||||| ||| |||||||||||| || |||||||| | |||||| |||| ||||||||
Sbjct 36429 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGG 36370
Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGA--AGTCTCACAGAATTAT 26458
| || ||||| || || || || || || ||| | ||||| || | |
Sbjct 36369 TTCACTCGTAACTTCATCTCTCATCCGTGAGACTACTGAGAACGAGTCTG-CAAACGCA- 36312
Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518
|| || ||||| || ||||| |||||||| || || || || ||||||||||| |||||
Sbjct 36311 GGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTC 36252
Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578
|| | | || || || || || || || ||| ||||| || || ||||| ||
Sbjct 36251 GGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTC 36192
Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638
|| | ||||| || | || || ||| | ||| |||||||||| | || ||||| ||
Sbjct 36191 GCAATCTGGCCAGTAATGGGAATCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTC 36132
Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698
||||| || || || ||||| |||||||| ||||||||| || ||| ||||
Sbjct 36131 AACCTTAACGGATTCAACTTCAACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAAC 36072
Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758
|||||||||||| | ||||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 36071 ACATGGGCTGATATCGTAAACCGTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAAC 36012
Query 26759 GCTCATAACTTTCCACTTGACTTAGCATC 26787
||||| ||||| ||||||||| | |||||
Sbjct 36011 GCTCACAACTTCCCACTTGACCTTGCATC 35983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146726366894856
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