Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq19 612 6e-171 >seq19 Length=72585 Score = 612 bits (678), Expect = 6e-171 Identities = 740/1003 (74%), Gaps = 12/1003 (1%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 ||| ||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || | Sbjct 11162 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 11103 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||||||| | || |||||||| || | || | |||||| ||||| || | Sbjct 11102 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 11043 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | ||||| |||||||| || ||||| || || ||||||||||| || | |||||||| | Sbjct 11042 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 10983 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTA---AAC-TGCGGCTA 36203 | | ||| || | | || ||||| || |||||||| || | ||| || | Sbjct 10982 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG---- 10927 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || ||| || |||||||| || | || ||||| || || || || || ||| Sbjct 10926 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 10867 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || |||||||||||||| ||||| || ||||| ||| ||| || | |||| Sbjct 10866 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 10807 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 || ||||| || || || ||||| || || |||||||| |||| ||| | | ||| Sbjct 10806 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 10747 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||||||| || |||||||| ||||| ||||| || ||||||||||| ||||| || ||| Sbjct 10746 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 10687 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || || | ||| || |||||||| || ||||||||||||||||| |||||||||||| Sbjct 10686 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 10627 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || || || | ||||| || | ||||||||| ||||||||| ||||| || || Sbjct 10626 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 10567 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 ||||||||| ||||| || | ||| |||| | || ||| ||||| | || ||| Sbjct 10566 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 10507 Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683 | ||| | | || || |||| ||||| | || || || || || || || ||||| Sbjct 10506 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 10447 Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 36743 || | |||||| || || | || |||||||||||||||||||||||||| ||||| ||| Sbjct 10446 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 10387 Query 36744 TTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 36803 || |||| |||| | || |||||||||||||||||||| || | | || ||| || Sbjct 10386 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 10327 Query 36804 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 || |||||||| |||||||| ||||| || ||||| ||||||| |||||| | | ||| Sbjct 10326 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 10267 Query 36864 GCTGTCACTGCTGTTA--AAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGA 36921 ||| |||||| | ||||| ||||||||||| ||| || ||||| || | || | Sbjct 10266 ACTGAAGTTGCTGTAAGTAAAGT--AGGGATCATTAATACTCCGAACCAACCGATGTAAA 10209 Query 36922 GGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964 | ||||| | || |||| ||| ||| |||| | |||| Sbjct 10208 GACGGTTCTCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 10166 Score = 612 bits (678), Expect = 6e-171 Identities = 740/1003 (74%), Gaps = 12/1003 (1%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 ||| ||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || | Sbjct 35981 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 36040 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||||||| | || |||||||| || | || | |||||| ||||| || | Sbjct 36041 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 36100 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | ||||| |||||||| || ||||| || || ||||||||||| || | |||||||| | Sbjct 36101 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 36160 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTA---AAC-TGCGGCTA 36203 | | ||| || | | || ||||| || |||||||| || | ||| || | Sbjct 36161 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG---- 36216 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || ||| || |||||||| || | || ||||| || || || || || ||| Sbjct 36217 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 36276 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || |||||||||||||| ||||| || ||||| ||| ||| || | |||| Sbjct 36277 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 36336 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 || ||||| || || || ||||| || || |||||||| |||| ||| | | ||| Sbjct 36337 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 36396 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||||||| || |||||||| ||||| ||||| || ||||||||||| ||||| || ||| Sbjct 36397 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 36456 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || || | ||| || |||||||| || ||||||||||||||||| |||||||||||| Sbjct 36457 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 36516 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || || || | ||||| || | ||||||||| ||||||||| ||||| || || Sbjct 36517 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 36576 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 ||||||||| ||||| || | ||| |||| | || ||| ||||| | || ||| Sbjct 36577 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 36636 Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683 | ||| | | || || |||| ||||| | || || || || || || || ||||| Sbjct 36637 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 36696 Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 36743 || | |||||| || || | || |||||||||||||||||||||||||| ||||| ||| Sbjct 36697 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 36756 Query 36744 TTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 36803 || |||| |||| | || |||||||||||||||||||| || | | || ||| || Sbjct 36757 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 36816 Query 36804 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 || |||||||| |||||||| ||||| || ||||| ||||||| |||||| | | ||| Sbjct 36817 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 36876 Query 36864 GCTGTCACTGCTGTTA--AAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGA 36921 ||| |||||| | ||||| ||||||||||| ||| || ||||| || | || | Sbjct 36877 ACTGAAGTTGCTGTAAGTAAAGT--AGGGATCATTAATACTCCGAACCAACCGATGTAAA 36934 Query 36922 GGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964 | ||||| | || |||| ||| ||| |||| | |||| Sbjct 36935 GACGGTTCTCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 36977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454366053726