Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq19 612 6e-171
>seq19
Length=72585
Score = 612 bits (678), Expect = 6e-171
Identities = 740/1003 (74%), Gaps = 12/1003 (1%)
Strand=Plus/Minus
Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027
||| ||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct 11162 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 11103
Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087
|| |||||||| | || |||||||| || | || | |||||| ||||| || |
Sbjct 11102 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 11043
Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147
| ||||| |||||||| || ||||| || || ||||||||||| || | |||||||| |
Sbjct 11042 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 10983
Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTA---AAC-TGCGGCTA 36203
| | ||| || | | || ||||| || |||||||| || | ||| || |
Sbjct 10982 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG---- 10927
Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263
|| || || ||| || |||||||| || | || ||||| || || || || || |||
Sbjct 10926 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 10867
Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323
|| || |||||||||||||| ||||| || ||||| ||| ||| || | ||||
Sbjct 10866 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 10807
Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383
|| ||||| || || || ||||| || || |||||||| |||| ||| | | |||
Sbjct 10806 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 10747
Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443
|||||||| || |||||||| ||||| ||||| || ||||||||||| ||||| || |||
Sbjct 10746 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 10687
Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503
|| || || | ||| || |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 10686 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 10627
Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563
|| || || | ||||| || | ||||||||| ||||||||| ||||| || ||
Sbjct 10626 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 10567
Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623
||||||||| ||||| || | ||| |||| | || ||| ||||| | || |||
Sbjct 10566 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 10507
Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683
| ||| | | || || |||| ||||| | || || || || || || || |||||
Sbjct 10506 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 10447
Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 36743
|| | |||||| || || | || |||||||||||||||||||||||||| ||||| |||
Sbjct 10446 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 10387
Query 36744 TTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 36803
|| |||| |||| | || |||||||||||||||||||| || | | || ||| ||
Sbjct 10386 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 10327
Query 36804 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863
|| |||||||| |||||||| ||||| || ||||| ||||||| |||||| | | |||
Sbjct 10326 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 10267
Query 36864 GCTGTCACTGCTGTTA--AAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGA 36921
||| |||||| | ||||| ||||||||||| ||| || ||||| || | || |
Sbjct 10266 ACTGAAGTTGCTGTAAGTAAAGT--AGGGATCATTAATACTCCGAACCAACCGATGTAAA 10209
Query 36922 GGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964
| ||||| | || |||| ||| ||| |||| | ||||
Sbjct 10208 GACGGTTCTCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 10166
Score = 612 bits (678), Expect = 6e-171
Identities = 740/1003 (74%), Gaps = 12/1003 (1%)
Strand=Plus/Plus
Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027
||| ||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct 35981 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 36040
Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087
|| |||||||| | || |||||||| || | || | |||||| ||||| || |
Sbjct 36041 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 36100
Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147
| ||||| |||||||| || ||||| || || ||||||||||| || | |||||||| |
Sbjct 36101 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 36160
Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTA---AAC-TGCGGCTA 36203
| | ||| || | | || ||||| || |||||||| || | ||| || |
Sbjct 36161 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAG---- 36216
Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263
|| || || ||| || |||||||| || | || ||||| || || || || || |||
Sbjct 36217 TTGTTGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATG 36276
Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323
|| || |||||||||||||| ||||| || ||||| ||| ||| || | ||||
Sbjct 36277 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTA 36336
Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383
|| ||||| || || || ||||| || || |||||||| |||| ||| | | |||
Sbjct 36337 GTCTCACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCA 36396
Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443
|||||||| || |||||||| ||||| ||||| || ||||||||||| ||||| || |||
Sbjct 36397 CCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 36456
Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503
|| || || | ||| || |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 36457 TGGAATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAA 36516
Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563
|| || || | ||||| || | ||||||||| ||||||||| ||||| || ||
Sbjct 36517 GAACCCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAG 36576
Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623
||||||||| ||||| || | ||| |||| | || ||| ||||| | || |||
Sbjct 36577 TAAGCTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCC 36636
Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683
| ||| | | || || |||| ||||| | || || || || || || || |||||
Sbjct 36637 ATGTATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTG 36696
Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 36743
|| | |||||| || || | || |||||||||||||||||||||||||| ||||| |||
Sbjct 36697 TAAAGCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCG 36756
Query 36744 TTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 36803
|| |||| |||| | || |||||||||||||||||||| || | | || ||| ||
Sbjct 36757 TTAGATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGAT 36816
Query 36804 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863
|| |||||||| |||||||| ||||| || ||||| ||||||| |||||| | | |||
Sbjct 36817 ACTGGCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAAT 36876
Query 36864 GCTGTCACTGCTGTTA--AAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGA 36921
||| |||||| | ||||| ||||||||||| ||| || ||||| || | || |
Sbjct 36877 ACTGAAGTTGCTGTAAGTAAAGT--AGGGATCATTAATACTCCGAACCAACCGATGTAAA 36934
Query 36922 GGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964
| ||||| | || |||| ||| ||| |||| | ||||
Sbjct 36935 GACGGTTCTCAGTTGAAGTAATCCATGAACAAAAACGTCCCCA 36977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150454366053726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |