Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq19 576 4e-160 >seq19 Length=72585 Score = 576 bits (638), Expect = 4e-160 Identities = 715/979 (73%), Gaps = 0/979 (0%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 ||| ||| || |||||||||||||||||||| || || |||||||||||||||||||| | Sbjct 11162 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 11103 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| |||||||| | || ||| ||||| ||| || | | ||| | || || || | Sbjct 11102 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 11043 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | ||||| |||||||| || |||||||| || ||||||||||| || || ||||||| | Sbjct 11042 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 10983 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | | ||| || | | || ||||| | || |||||||| || | ||| |||| Sbjct 10982 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGT 10923 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | || ||| || |||||||| || | || ||||| || || || || || ||||| | Sbjct 10922 TGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGT 10863 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | || ||||| ||||| ||||| || ||||| ||| ||| | |||| || | Sbjct 10862 AAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCT 10803 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 |||| ||||| || ||||| || || || ||||| |||| ||| | | ||||||| Sbjct 10802 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 10743 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||| Sbjct 10742 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10683 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||||| ||| ||||| ||||| ||||| |||||||||||||| |||||| |||| | Sbjct 10682 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 10623 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 |||| |||| |||||||| | ||||| | ||||| || || || || || || | Sbjct 10622 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 10563 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 |||| |||||| || ||||||||||| | | || ||| ||||| | || |||| || Sbjct 10562 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 10503 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 | | || || || | |||||| | |||| || ||||| || || || ||||||| Sbjct 10502 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 10443 Query 5910 GCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 |||| ||||| ||| |||||||||||||| || |||||||| | || || ||||| | Sbjct 10442 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 10383 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | | || | || || || || |||||||||||||| || | || ||||| | || | Sbjct 10382 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 10323 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 | ||||| || || ||||| || || || || ||||| | ||||||| || ||| | | Sbjct 10322 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 10263 Query 6090 TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGT 6149 |||||| || | | | || |||||||| || || ||||| || | || || |||| Sbjct 10262 AAGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGT 10203 Query 6150 TGTTGGTGCTAGTAACCCA 6168 | | || ||||| ||| Sbjct 10202 TCTCAGTTGAAGTAATCCA 10184 Score = 576 bits (638), Expect = 4e-160 Identities = 715/979 (73%), Gaps = 0/979 (0%) Strand=Plus/Plus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 ||| ||| || |||||||||||||||||||| || || |||||||||||||||||||| | Sbjct 35981 CAGATGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGA 36040 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| |||||||| | || ||| ||||| ||| || | | ||| | || || || | Sbjct 36041 GGTTAGCACGGTTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTA 36100 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | ||||| |||||||| || |||||||| || ||||||||||| || || ||||||| | Sbjct 36101 CAGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTG 36160 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | | ||| || | | || ||||| | || |||||||| || | ||| |||| Sbjct 36161 TGAACCAGATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGT 36220 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | || ||| || |||||||| || | || ||||| || || || || || ||||| | Sbjct 36221 TGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGT 36280 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | || ||||| ||||| ||||| || ||||| ||| ||| | |||| || | Sbjct 36281 AAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCT 36340 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 |||| ||||| || ||||| || || || ||||| |||| ||| | | ||||||| Sbjct 36341 CACGGATGAGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGA 36400 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||| Sbjct 36401 ATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 36460 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||||| ||| ||||| ||||| ||||| |||||||||||||| |||||| |||| | Sbjct 36461 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAAC 36520 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 |||| |||| |||||||| | ||||| | ||||| || || || || || || | Sbjct 36521 CCTGACCGATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAG 36580 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 |||| |||||| || ||||||||||| | | || ||| ||||| | || |||| || Sbjct 36581 CTACAGCAATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGT 36640 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 | | || || || | |||||| | |||| || ||||| || || || ||||||| Sbjct 36641 ATGAACAAATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAA 36700 Query 5910 GCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 |||| ||||| ||| |||||||||||||| || |||||||| | || || ||||| | Sbjct 36701 GCCACTCATCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAG 36760 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | | || | || || || || |||||||||||||| || | || ||||| | || | Sbjct 36761 ATGTAGGGATTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 36820 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 | ||||| || || ||||| || || || || ||||| | ||||||| || ||| | | Sbjct 36821 GCTCACGGATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTG 36880 Query 6090 TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGT 6149 |||||| || | | | || |||||||| || || ||||| || | || || |||| Sbjct 36881 AAGTTGCTGTAAGTAAAGTAGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGT 36940 Query 6150 TGTTGGTGCTAGTAACCCA 6168 | | || ||||| ||| Sbjct 36941 TCTCAGTTGAAGTAATCCA 36959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649565558434