Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5 295 5e-75 >seq5 Length=1518631 Score = 295 bits (326), Expect = 5e-75 Identities = 450/640 (70%), Gaps = 1/640 (0%) Strand=Plus/Plus Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810 ||| ||| | || || || || || |||||||| |||||||||| | | || || || Sbjct 815292 GTTGATCTTGAGCGTCGGGAACGGCCTGGGCTCGTTCTCGAGCTGCTTGTAGAGGGGCTC 815351 Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||| | ||| ||||| | ||| || | ||| ||||| ||||| || | || Sbjct 815352 GACGTGGTTGGAGTACACGTGGGTGTCGCCGCAGCAGTGCACAAAGTCTCCGGGCTTCAG 815411 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 ||| || || |||| |||| | ||||| || |||||||| |||||||| ||||| || Sbjct 815412 TCCGCACACCTGCGCCACCATGCAGGTGAGCAGGGAGTAGCTCGCGATGTTGAAGGGCAC 815471 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 ||||| |||||||| | |||||||||||| | ||| ||||| | ||| |||| || Sbjct 815472 ACCGAGGCCCATGTCGCACGACCTCTGGTACATCTGGCACGATAACTCACCGTTTGCGAC 815531 Query 29991 GTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 30050 ||||||||| || | |||||||||| || || ||||| | | |||||| Sbjct 815532 GTAAAACTGGCAGAACATGTGGCACGGGGGCAGGGCCATCTCCTTGAGCGCCGCGGGGTT 815591 Query 30051 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 30110 ||| ||| | | ||| |||||||| | ||||||||| |||| ||| | | | Sbjct 815592 CCACGCGGTGAGCAGGATACGCCTGTCGTTGGGGTTGTTCTTGATCTTGTCGATCACCTC 815651 Query 30111 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCC 30170 ||||| ||||| ||| || | ||||| || ||||||| ||||||| || || Sbjct 815652 CGCGAGCTGGTCCACTCCCTGACCGGTATAGTCGGCGTGCATGTCCTTGTACTCGGCGCC 815711 Query 30171 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30230 ||| || | ||||||||| ||||||||||| || ||||| ||||| |||||||| | | Sbjct 815712 GAAGTGGCGCCACTGGAAGCCGTACACCGGCCCGAGGTCACCCTCCTCCCTGTGACCCAG 815771 Query 30231 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30290 ||| |||| | | || | | ||||| ||||||| || | | |||| || Sbjct 815772 GCCGACGCTGTCGAGGTACTCGCGGCTTCCGTTACCGTCCCAAATGTGAATGTCCTTGTC 815831 Query 30291 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30350 ||| || |||| | | ||| | || |||||||||| | ||||||||| ||||| | Sbjct 815832 CTGGAGTTCCTTGGCGCTGGTGCAGCCCTTGACGAACCAGATGAGCTCCTCCGCGACGCC 815891 Query 30351 CTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTG 30389 | |||| ||||| | |||||| ||||| || ||||| ||| Sbjct 815892 CCTCCAGAAGACACGCTTGGTGGTGAGCAGCGGGAAGCTG 815931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617505379487