Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq5 295 5e-75
>seq5
Length=1518631
Score = 295 bits (326), Expect = 5e-75
Identities = 450/640 (70%), Gaps = 1/640 (0%)
Strand=Plus/Plus
Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810
||| ||| | || || || || || |||||||| |||||||||| | | || || ||
Sbjct 815292 GTTGATCTTGAGCGTCGGGAACGGCCTGGGCTCGTTCTCGAGCTGCTTGTAGAGGGGCTC 815351
Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870
||||| | ||| ||||| | ||| || | ||| ||||| ||||| || | ||
Sbjct 815352 GACGTGGTTGGAGTACACGTGGGTGTCGCCGCAGCAGTGCACAAAGTCTCCGGGCTTCAG 815411
Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930
||| || || |||| |||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct 815412 TCCGCACACCTGCGCCACCATGCAGGTGAGCAGGGAGTAGCTCGCGATGTTGAAGGGCAC 815471
Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990
||||| |||||||| | |||||||||||| | ||| ||||| | ||| |||| ||
Sbjct 815472 ACCGAGGCCCATGTCGCACGACCTCTGGTACATCTGGCACGATAACTCACCGTTTGCGAC 815531
Query 29991 GTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 30050
||||||||| || | |||||||||| || || ||||| | | ||||||
Sbjct 815532 GTAAAACTGGCAGAACATGTGGCACGGGGGCAGGGCCATCTCCTTGAGCGCCGCGGGGTT 815591
Query 30051 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 30110
||| ||| | | ||| |||||||| | ||||||||| |||| ||| | | |
Sbjct 815592 CCACGCGGTGAGCAGGATACGCCTGTCGTTGGGGTTGTTCTTGATCTTGTCGATCACCTC 815651
Query 30111 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCC 30170
||||| ||||| ||| || | ||||| || ||||||| ||||||| || ||
Sbjct 815652 CGCGAGCTGGTCCACTCCCTGACCGGTATAGTCGGCGTGCATGTCCTTGTACTCGGCGCC 815711
Query 30171 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30230
||| || | ||||||||| ||||||||||| || ||||| ||||| |||||||| | |
Sbjct 815712 GAAGTGGCGCCACTGGAAGCCGTACACCGGCCCGAGGTCACCCTCCTCCCTGTGACCCAG 815771
Query 30231 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30290
||| |||| | | || | | ||||| ||||||| || | | |||| ||
Sbjct 815772 GCCGACGCTGTCGAGGTACTCGCGGCTTCCGTTACCGTCCCAAATGTGAATGTCCTTGTC 815831
Query 30291 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30350
||| || |||| | | ||| | || |||||||||| | ||||||||| ||||| |
Sbjct 815832 CTGGAGTTCCTTGGCGCTGGTGCAGCCCTTGACGAACCAGATGAGCTCCTCCGCGACGCC 815891
Query 30351 CTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTG 30389
| |||| ||||| | |||||| ||||| || ||||| |||
Sbjct 815892 CCTCCAGAAGACACGCTTGGTGGTGAGCAGCGGGAAGCTG 815931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617505379487
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |