Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 277 3e-69 seq6 239 8e-58 seq7 197 3e-45 >seq1 Length=2053059 Score = 277 bits (306), Expect = 3e-69 Identities = 532/775 (69%), Gaps = 22/775 (3%) Strand=Plus/Minus Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGC---CACCTCCTGAGAGTCTGTGTACTCC 213536 ||||| |||||| || |||||||| || || | ||||| | ||| |||||||| Sbjct 2015148 GGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAG---GTGTACTCG 2015092 Query 213537 ATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTT 213596 | ||||||||||| |||||| | ||||||||||||| |||||||| ||||| ||||| Sbjct 2015091 ACAATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTT- 2015033 Query 213597 GCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAG 213655 ||| | ||| | ||||||| |||||||||| ||| || ||||| | ||||||| | || Sbjct 2015032 GCGGTTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAG 2014973 Query 213656 TATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTC 213715 || | |||||| | | |||||||||| | | | | || || |||| Sbjct 2014972 GATGGCGAACCAGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCG---CCTC 2014916 Query 213716 GTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGG 213774 ||||| |||||| || | | ||| || | ||||||| | | | | || ||||| || Sbjct 2014915 GTACTTTTCGTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCG-CGAGACCCGG---GG 2014860 Query 213775 ATGCG---GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831 | || || || | |||| |||| || |||| | | ||| | || ||||||||| | Sbjct 2014859 CTTCGTTGGGGCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGAT 2014800 Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891 | | |||||| || |||||||||||||| | | ||| ||| || ||| | Sbjct 2014799 CGTTGGTCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCT 2014740 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 |||| || || || |||| ||||||||||||||||||||||| | ||||||||| || | Sbjct 2014739 TGCGGAGGTCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATG 2014680 Query 213952 CGCCCGGCCTCTTGC---CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008 |||| |||||||| |||||||||| || ||| || ||| |||| ||| | Sbjct 2014679 CGCCTTTCCTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAA 2014620 Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068 | | ||| | | |||||||| ||||||||| || || || || || ||| | Sbjct 2014619 GCATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGC 2014560 Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | || | ||||| || || ||||| |||||| |||||||||| ||||| | Sbjct 2014559 GGATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCT 2014500 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCG 214188 | | || || |||||| | ||| || || | | | | | ||| || || Sbjct 2014499 TGAGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACG 2014440 Query 214189 AGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCAT 214243 | |||||||| | || | || |||||||| ||||||||| || ||| |||| Sbjct 2014439 ACAGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCAT 2014385 Score = 165 bits (182), Expect = 2e-35 Identities = 475/721 (66%), Gaps = 25/721 (3%) Strand=Plus/Minus Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762 ||||| |||||| ||||| | | | | ||| ||||||||||| | || | ||| Sbjct 2015985 GACTGCGACTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATGTCCACGAGGATGCGCTGC 2015926 Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAG-CCGGGGATGTT 212821 || |||||| || |||||| |||| || ||||||| || |||| | || | || Sbjct 2015925 TTGATCTCCCAGACCGTCTTGTAGATCTCCTTGAGGTTGTCGGGGATGTCCAGCGA---- 2015870 Query 212822 CTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTC-CTCG--TTCCAGAGGCC 212878 ||| || || || ||| | | |||| | | || || | | ||||||||| Sbjct 2015869 CTGGACGGAGCCGTTGTTGGCGATGAGCTC---GTTCTTGAGGCTGGGGTCCCAGAGGCC 2015813 Query 212879 CCTGGTCTCC---AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935 | | ||| ||| || ||||| |||| || | ||| || || ||||| Sbjct 2015812 CAT---CTCGGTGAGGTCGGAGAGGAGGTGCTGGTTCACGACGGTGAACTCGCCGGAGAG 2015756 Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995 ||| | | ||| | ||| || ||||| ||||||| || ||||||||| |||| ||| Sbjct 2015755 CACGCGGCGGGCGTAGATGTTGGAGGTGTACGGCTCGAAGCACTCGTTGTTGCCCAAAAT 2015696 Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055 ||| | ||| || ||||||||||| |||||||| || ||| | || |||||||| Sbjct 2015695 CTGGGACGTGGACGCGGTGGGCATGGGCGCCACCAGCAGGGAGTTGCGGACGCCGTGCTC 2015636 Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTG-CCAGACAGGTCCTCGTCCTTCA 213114 | ||| ||||||| | | |||||| ||| | | || | || || ||| Sbjct 2015635 GGAGATCTTCGTCCGAAGCCCGGTCCAGTCGTGCCTGTCGCCGCCGGGCATC-TCGGTCA 2015577 Query 213115 CGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGT 213174 | ||||||||| || | || ||| ||| |||||| ||| |||| || || Sbjct 2015576 GGCCCCACATGTCGGGTTGGAGGACGCCGTTGGAGACGGGGGAGCCTGGGTAGGACTCGT 2015517 Query 213175 AGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTT 213234 ||| || | |||||| | ||| |||| | || || ||| |||||||||| | Sbjct 2015516 AGGTTCCGTCGCGCTTGGCGATGTCGTTGGACTCGGTGAGCGCGGCGAAGTAGATGGTCT 2015457 Query 213235 CAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTT 213294 | || ||||| |||||||||||| || || || || ||||||||| | | | Sbjct 2015456 CGAAGATCTCGGCGTTGAGCTTCTTCGCTTCGGGAGAGTCGAAGGGCATGCCGAGGAGGA 2015397 Query 213295 GGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT---TAG 213351 ||| || || || || ||||| || |||| ||| ||||| ||||| ||| || | Sbjct 2015396 TGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAATGGGCCTGTGCTTCATGTTGCTGC 2015337 Query 213352 ACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGG 213411 | ||| | ||| | |||||| ||||| ||||||||| |||||||||||||| Sbjct 2015336 GCCTGGCG---GTCTCGACGGGGTAGTAGTTGACGTCGATGATGCGGTTGAGGTTGCGGG 2015280 Query 213412 T 213412 | Sbjct 2015279 T 2015279 >seq6 Length=1431126 Score = 239 bits (264), Expect = 8e-58 Identities = 328/455 (72%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| |||||||| ||||| |||| | |||||| ||| Sbjct 1273058 CTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTC 1273117 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||| ||||||| || ||| ||| || | || ||| | ||| | || || Sbjct 1273118 CATCCAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAG 1273177 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||||| |||||| |||||||||| | |||||||| ||||||||| | ||||| Sbjct 1273178 GTGATCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGC 1273237 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | || | || |||||||||||| |||| || || ||| || ||||| Sbjct 1273238 GCAGGGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTG 1273297 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | | ||| |||||| ||| || ||| | || | | ||||| | ||| ||||| Sbjct 1273298 CCTGACGACGGACTCGTTGGGCTTCTTGTTGATGTAC---GAGTAGAGGAGGCACGCAAA 1273354 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||| | ||| ||||| |||||||||||| ||||||||||| ||| || ||||| Sbjct 1273355 GTCGCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 1273414 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || || |||||| | || | ||| ||||| ||||||||||||||||| Sbjct 1273415 GAGGCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 1273474 Query 48259 CACTGC-CGCGAACGCGGTGAGCCTCTCTCCGAAA 48292 | ||| |||||||||| | || | ||| ||||| Sbjct 1273475 GA-TGCACGCGAACGCGATCAGGCGCTCGGCGAAA 1273508 >seq7 Length=1394110 Score = 197 bits (218), Expect = 3e-45 Identities = 548/825 (66%), Gaps = 24/825 (3%) Strand=Plus/Minus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||| | ||| |||| | ||| || ||||||| | ||| |||||||| Sbjct 900717 CTCGAAGAAGTTCGCCTTGCCCTGGAGCGATATCATCTCCATCCACTCGAACGGGTTGGG 900658 Query 47920 TGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGAT 47979 ||||| ||||| || ||| | ||| || |||| | |||||||| ||||||| Sbjct 900657 GGTGTTCCACACCTTCTCCACGCCGAGCTGCGTCATCAGGCGGTCCGCGACAAACTCGAT 900598 Query 47980 GTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA-CACGGGCAAAGCCTTTGTGA 48038 ||| | |||||||| ||||||||| | ||| | |||| || ||| | | Sbjct 900597 GTACTCGGACATGAGATCCGCGTTCATGCCCACGAGCGCGCACGA-CAGAGCATCGCACA 900539 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAA----CGCGGGACTCT 48094 |||||||||||| || | ||| || ||| || |||| || | ||||||| Sbjct 900538 CAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATCTCCTGCAGCCGCGCGGGATCGA 900479 Query 48095 GAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCT 48154 |||||| ||| ||| ||| ||||| | |||||| ||||| | ||| | ||| Sbjct 900478 GAGGGTGC-TTGAGCA------TGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCC 900426 Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||||| | ||||||| ||||||||||| ||| || |||||| ||| | || ||| Sbjct 900425 TCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCGCATGAGCCCGCGCTTCTTG 900366 Query 48215 AGCCAGAAAATTGCCGCGAAA-GAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| ||||| || ||| || || |||||||||||||||||||| ||||||||| Sbjct 900365 AGCCAGAAGATTGC-GCAAAACGATCCGGAGAAGAAGATGCCCTCCACGCACGCGAACGC 900307 Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 || | ||| ||||| | | | ||| |||||| || ||||| | || Sbjct 900306 CACCAGTCGCTCGGCGAAACA--CTCCGAGGACTG-GATCCACTTGAGGGCCCACTGCGC 900250 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCAC-TCAC-CT 48391 ||| | | |||| | | ||||||| ||| || | | | | |||| || Sbjct 900249 CTTGCGCGCCACCGTGGGCACGTTGTGAATGGCCCTGAACAGGTGCCTCTTCTTCACGCT 900190 Query 48392 GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 |||| || ||||| || ||| ||||| |||| ||||| | ||||| || Sbjct 900189 --GTCCTTGACGTAGGTGTCGATGAGCAACCCGTACGTCTCCGAGTGGATGTTCTCGATG 900132 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTC 48511 |||| ||| ||| ||||||| |||| ||||| || ||| || || | ||| | Sbjct 900131 GCGAGCTGAAACGCGTAGAACGCCCGAGCCTCCGGCAGCTGGACGTCCTTCATGAACCGG 900072 Query 48512 TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 || ||||| || ||||| || || || || ||||| || ||||| || Sbjct 900071 AGGCCTAGGTTCTCGAGCACGATCCCGTCAGACGCCGCGAAGAACGCGAGGACGTGCGAG 900012 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG-CCCTGTACGTCTTTGCCCAGGTC 48630 | ||| || ||||||||| | | || | |||| || |||| ||| || ||||| Sbjct 900011 ATGAAGTGCTGCTCGTTGTCGTTCAGCGTCACCCAGTCCTTGTA-GTCCATGGAGAGGTC 899953 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | || ||| | ||||||| ||||| || | |||||||| Sbjct 899952 GATCTCCTCCGCGCTCCAGAATGACGCCTCCGCCTGCTTGTACAT 899908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532578760960