Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1 277 3e-69
seq6 239 8e-58
seq7 197 3e-45
>seq1
Length=2053059
Score = 277 bits (306), Expect = 3e-69
Identities = 532/775 (69%), Gaps = 22/775 (3%)
Strand=Plus/Minus
Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGC---CACCTCCTGAGAGTCTGTGTACTCC 213536
||||| |||||| || |||||||| || || | ||||| | ||| ||||||||
Sbjct 2015148 GGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAG---GTGTACTCG 2015092
Query 213537 ATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTT 213596
| ||||||||||| |||||| | ||||||||||||| |||||||| ||||| |||||
Sbjct 2015091 ACAATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTT- 2015033
Query 213597 GCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAG 213655
||| | ||| | ||||||| |||||||||| ||| || ||||| | ||||||| | ||
Sbjct 2015032 GCGGTTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAG 2014973
Query 213656 TATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTC 213715
|| | |||||| | | |||||||||| | | | | || || ||||
Sbjct 2014972 GATGGCGAACCAGAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCG---CCTC 2014916
Query 213716 GTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGG 213774
||||| |||||| || | | ||| || | ||||||| | | | | || ||||| ||
Sbjct 2014915 GTACTTTTCGTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCG-CGAGACCCGG---GG 2014860
Query 213775 ATGCG---GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831
| || || || | |||| |||| || |||| | | ||| | || ||||||||| |
Sbjct 2014859 CTTCGTTGGGGCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGAT 2014800
Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891
| | |||||| || |||||||||||||| | | ||| ||| || ||| |
Sbjct 2014799 CGTTGGTCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCT 2014740
Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951
|||| || || || |||| ||||||||||||||||||||||| | ||||||||| || |
Sbjct 2014739 TGCGGAGGTCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATG 2014680
Query 213952 CGCCCGGCCTCTTGC---CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008
|||| |||||||| |||||||||| || ||| || ||| |||| ||| |
Sbjct 2014679 CGCCTTTCCTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAA 2014620
Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068
| | ||| | | |||||||| ||||||||| || || || || || ||| |
Sbjct 2014619 GCATGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGC 2014560
Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128
| || | ||||| || || ||||| |||||| |||||||||| ||||| |
Sbjct 2014559 GGATGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCT 2014500
Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCG 214188
| | || || |||||| | ||| || || | | | | | ||| || ||
Sbjct 2014499 TGAGGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACG 2014440
Query 214189 AGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCAT 214243
| |||||||| | || | || |||||||| ||||||||| || ||| ||||
Sbjct 2014439 ACAGCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCAT 2014385
Score = 165 bits (182), Expect = 2e-35
Identities = 475/721 (66%), Gaps = 25/721 (3%)
Strand=Plus/Minus
Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762
||||| |||||| ||||| | | | | ||| ||||||||||| | || | |||
Sbjct 2015985 GACTGCGACTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATGTCCACGAGGATGCGCTGC 2015926
Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAG-CCGGGGATGTT 212821
|| |||||| || |||||| |||| || ||||||| || |||| | || | ||
Sbjct 2015925 TTGATCTCCCAGACCGTCTTGTAGATCTCCTTGAGGTTGTCGGGGATGTCCAGCGA---- 2015870
Query 212822 CTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTC-CTCG--TTCCAGAGGCC 212878
||| || || || ||| | | |||| | | || || | | |||||||||
Sbjct 2015869 CTGGACGGAGCCGTTGTTGGCGATGAGCTC---GTTCTTGAGGCTGGGGTCCCAGAGGCC 2015813
Query 212879 CCTGGTCTCC---AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935
| | ||| ||| || ||||| |||| || | ||| || || |||||
Sbjct 2015812 CAT---CTCGGTGAGGTCGGAGAGGAGGTGCTGGTTCACGACGGTGAACTCGCCGGAGAG 2015756
Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995
||| | | ||| | ||| || ||||| ||||||| || ||||||||| |||| |||
Sbjct 2015755 CACGCGGCGGGCGTAGATGTTGGAGGTGTACGGCTCGAAGCACTCGTTGTTGCCCAAAAT 2015696
Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055
||| | ||| || ||||||||||| |||||||| || ||| | || ||||||||
Sbjct 2015695 CTGGGACGTGGACGCGGTGGGCATGGGCGCCACCAGCAGGGAGTTGCGGACGCCGTGCTC 2015636
Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTG-CCAGACAGGTCCTCGTCCTTCA 213114
| ||| ||||||| | | |||||| ||| | | || | || || |||
Sbjct 2015635 GGAGATCTTCGTCCGAAGCCCGGTCCAGTCGTGCCTGTCGCCGCCGGGCATC-TCGGTCA 2015577
Query 213115 CGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGT 213174
| ||||||||| || | || ||| ||| |||||| ||| |||| || ||
Sbjct 2015576 GGCCCCACATGTCGGGTTGGAGGACGCCGTTGGAGACGGGGGAGCCTGGGTAGGACTCGT 2015517
Query 213175 AGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTT 213234
||| || | |||||| | ||| |||| | || || ||| |||||||||| |
Sbjct 2015516 AGGTTCCGTCGCGCTTGGCGATGTCGTTGGACTCGGTGAGCGCGGCGAAGTAGATGGTCT 2015457
Query 213235 CAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTT 213294
| || ||||| |||||||||||| || || || || ||||||||| | | |
Sbjct 2015456 CGAAGATCTCGGCGTTGAGCTTCTTCGCTTCGGGAGAGTCGAAGGGCATGCCGAGGAGGA 2015397
Query 213295 GGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT---TAG 213351
||| || || || || ||||| || |||| ||| ||||| ||||| ||| || |
Sbjct 2015396 TGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAATGGGCCTGTGCTTCATGTTGCTGC 2015337
Query 213352 ACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGG 213411
| ||| | ||| | |||||| ||||| ||||||||| ||||||||||||||
Sbjct 2015336 GCCTGGCG---GTCTCGACGGGGTAGTAGTTGACGTCGATGATGCGGTTGAGGTTGCGGG 2015280
Query 213412 T 213412
|
Sbjct 2015279 T 2015279
>seq6
Length=1431126
Score = 239 bits (264), Expect = 8e-58
Identities = 328/455 (72%), Gaps = 5/455 (1%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || ||||| | ||||| |||||||| ||||| |||| | |||||| |||
Sbjct 1273058 CTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGGAGGGAGATGAGCTC 1273117
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
||| || ||| ||||||| || ||| ||| || | || ||| | ||| | || ||
Sbjct 1273118 CATCCAGTCGAAAGGGTTGGCTGCGTTGTACTCCTTCGACATGCCGAGCTGGCCGAGGAG 1273177
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
|||||| |||||| |||||||||| | |||||||| ||||||||| | |||||
Sbjct 1273178 GTGATCGGCGACGAACTCGATGTACTCGGACATGAGATCCGCGTTCATGCCGACGAGGGC 1273237
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||| | || | || |||||||||||| |||| || || ||| || |||||
Sbjct 1273238 GCAGGGGAGCGCGTCGCAGACAAACTCCTTCTCGATCTCGACAGCCTCCTTGACGATCTG 1273297
Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138
| | ||| |||||| ||| || ||| | || | | ||||| | ||| |||||
Sbjct 1273298 CCTGACGACGGACTCGTTGGGCTTCTTGTTGATGTAC---GAGTAGAGGAGGCACGCAAA 1273354
Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198
||| | ||| | ||| ||||| |||||||||||| ||||||||||| ||| || |||||
Sbjct 1273355 GTCGCGGTGAAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 1273414
Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258
|| || | || || |||||| | || | ||| ||||| |||||||||||||||||
Sbjct 1273415 GAGGCCGCGCTTCTTCAGCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 1273474
Query 48259 CACTGC-CGCGAACGCGGTGAGCCTCTCTCCGAAA 48292
| ||| |||||||||| | || | ||| |||||
Sbjct 1273475 GA-TGCACGCGAACGCGATCAGGCGCTCGGCGAAA 1273508
>seq7
Length=1394110
Score = 197 bits (218), Expect = 3e-45
Identities = 548/825 (66%), Gaps = 24/825 (3%)
Strand=Plus/Minus
Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919
||| |||||||| | ||| |||| | ||| || ||||||| | ||| ||||||||
Sbjct 900717 CTCGAAGAAGTTCGCCTTGCCCTGGAGCGATATCATCTCCATCCACTCGAACGGGTTGGG 900658
Query 47920 TGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGAT 47979
||||| ||||| || ||| | ||| || |||| | |||||||| |||||||
Sbjct 900657 GGTGTTCCACACCTTCTCCACGCCGAGCTGCGTCATCAGGCGGTCCGCGACAAACTCGAT 900598
Query 47980 GTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA-CACGGGCAAAGCCTTTGTGA 48038
||| | |||||||| ||||||||| | ||| | |||| || ||| | |
Sbjct 900597 GTACTCGGACATGAGATCCGCGTTCATGCCCACGAGCGCGCACGA-CAGAGCATCGCACA 900539
Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAA----CGCGGGACTCT 48094
|||||||||||| || | ||| || ||| || |||| || | |||||||
Sbjct 900538 CAAACTCCTTCTCGATGTCCACCGCATCCTTGACGATCTCCTGCAGCCGCGCGGGATCGA 900479
Query 48095 GAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCT 48154
|||||| ||| ||| ||| ||||| | |||||| ||||| | ||| | |||
Sbjct 900478 GAGGGTGC-TTGAGCA------TGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCC 900426
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
||||||| | ||||||| ||||||||||| ||| || |||||| ||| | || |||
Sbjct 900425 TCGTCCCTGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGCGCATGAGCCCGCGCTTCTTG 900366
Query 48215 AGCCAGAAAATTGCCGCGAAA-GAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
|||||||| ||||| || ||| || || |||||||||||||||||||| |||||||||
Sbjct 900365 AGCCAGAAGATTGC-GCAAAACGATCCGGAGAAGAAGATGCCCTCCACGCACGCGAACGC 900307
Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333
|| | ||| ||||| | | | ||| |||||| || ||||| | ||
Sbjct 900306 CACCAGTCGCTCGGCGAAACA--CTCCGAGGACTG-GATCCACTTGAGGGCCCACTGCGC 900250
Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCAC-TCAC-CT 48391
||| | | |||| | | ||||||| ||| || | | | | |||| ||
Sbjct 900249 CTTGCGCGCCACCGTGGGCACGTTGTGAATGGCCCTGAACAGGTGCCTCTTCTTCACGCT 900190
Query 48392 GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451
|||| || ||||| || ||| ||||| |||| ||||| | ||||| ||
Sbjct 900189 --GTCCTTGACGTAGGTGTCGATGAGCAACCCGTACGTCTCCGAGTGGATGTTCTCGATG 900132
Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTC 48511
|||| ||| ||| ||||||| |||| ||||| || ||| || || | ||| |
Sbjct 900131 GCGAGCTGAAACGCGTAGAACGCCCGAGCCTCCGGCAGCTGGACGTCCTTCATGAACCGG 900072
Query 48512 TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571
|| ||||| || ||||| || || || || ||||| || ||||| ||
Sbjct 900071 AGGCCTAGGTTCTCGAGCACGATCCCGTCAGACGCCGCGAAGAACGCGAGGACGTGCGAG 900012
Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG-CCCTGTACGTCTTTGCCCAGGTC 48630
| ||| || ||||||||| | | || | |||| || |||| ||| || |||||
Sbjct 900011 ATGAAGTGCTGCTCGTTGTCGTTCAGCGTCACCCAGTCCTTGTA-GTCCATGGAGAGGTC 899953
Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675
| || ||| | ||||||| ||||| || | ||||||||
Sbjct 899952 GATCTCCTCCGCGCTCCAGAATGACGCCTCCGCCTGCTTGTACAT 899908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532578760960
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