Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq7 194 3e-44
seq6 140 6e-28
seq1 131 3e-25
>seq7
Length=1394110
Score = 194 bits (214), Expect = 3e-44
Identities = 560/854 (66%), Gaps = 30/854 (4%)
Strand=Plus/Plus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| ||||||||||| |||| | ||| ||||| ||| || ||||| || || ||
Sbjct 899902 TGGAAGATGTACAAGCAGGCGGAGGCGTCATTCTGGAGCGCGGAGGAGATCGACCTCTCC 899961
Query 25540 AAGGAC---ATGGACGGCTGGT-ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTA 25595
| |||| | |||| | ||| ||||| | | | |||||||||| || || | |
Sbjct 899962 ATGGACTACAAGGACTG--GGTGACGCTGAA--CGACAACGAGCAGCACTTCATCTCGCA 900017
Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655
||| | || ||||| || || ||||| || || ||| |||||| || || | ||
Sbjct 900018 CGTCCTCGCGTTCTTCGCGGCGTCTGACGGGATCGTGCTCGAGAACCTAGGCCTCCGGTT 900077
Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
|| | ||| || ||| |||||| | ||||||| || ||| | ||||||||
Sbjct 900078 CATGAAGGACGTCCAGCTGCCGGAGGCTCGGGCGTTCTACGCGTTTCAGCTCGCCATCGA 900137
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| | ||||| ||| ||| | ||| | || ||| | | ||| || |
Sbjct 900138 GAACATCCACTCGGAGACGTACGGGTTGCTCATCGACACCTACGTCAAGGACAGCGTGAA 900197
Query 25776 GAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834
|| ||| | ||||| | ||||| | || | |||| | | | ||||||| ||
Sbjct 900198 GA-AGAGGCACCTGTTCAGGGCCATTCACAACGTGCCCACGGTGGCGCGCAAGGCGCAGT 900256
Query 25835 GGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
||||| | ||||||||| | | | ||| | | || |||||| ||||| || ||
Sbjct 900257 GGGCCCTCAAGTGGATCCAGTCCTCGGAGTGTTTCGC----CGAGCGACTGGTGGCGTTC 900312
Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
|| ||| |||||||||||||| ||| ||| |||||| || ||||||||||||||| |
Sbjct 900313 GCGTGC-GTGGAGGGCATCTTCTTCTCCGGATCGTTTTGCGCAATCTTCTGGCTCAAGAA 900371
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
| ||| ||||| |||||| ||| ||||||||||||||| |||||||||||| ||
Sbjct 900372 GCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGCTCATCTCCAGGGACGAGGGCCT 900431
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA-- 26070
|||| | || || |||||||| |||||| | | |||| || ||| |||| |
Sbjct 900432 CCACTGCGACTTCGCCTGCCTCCTCTACTC------CATGCT-CAAGCACCCTCTCGATC 900484
Query 26071 GAGACCGTCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128
| || || ||| ||| |||| || || ||||| |||||||||||||||
Sbjct 900485 CCGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACATCGAGAAGGAGTTTGTGTGCG 900544
Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAG 26187
||||||||||| | || |||||| | | ||||| |||
Sbjct 900545 ATGCTCTGTCGTGCGCGCTCGTGGGCATGAAC-GCGGATCTCATGTCCGAGTACATCGAG 900603
Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAAC 26247
| ||| || |||| ||| || ||||| || | | | | | | || || |||
Sbjct 900604 TTTGTCGCGGACCGCCTGATGACGCAGCTCGGCGTGGAGAAGGTGTGGAACACCCCCAAC 900663
Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307
|||||||| | ||||| | |||||| | | || ||| | |||||||| || | ||
Sbjct 900664 CCGTTCGAGTGGATGGAGATGATATCGCTCCAGGGCAAGGCGAACTTCTTCGAGCACCGG 900723
Query 26308 GTCGGCGACTATCA 26321
|| | | | |||||
Sbjct 900724 GTGGACCAGTATCA 900737
>seq6
Length=1431126
Score = 140 bits (154), Expect = 6e-28
Identities = 307/456 (67%), Gaps = 21/456 (5%)
Strand=Plus/Minus
Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932
|||||| ||| | || || || ||| | ||||||||||| ||| ||| || || |||
Sbjct 1273502 CGAGCGCCTGATCGCGTTCGCGTGCA-TCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCT 1273444
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
|||||| |||||| ||| || || ||||||||| || ||| ||||||||||||
Sbjct 1273443 -CCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 1273385
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052
|||||| | |||||||| || ||| | || ||||| ||||| |||||| || || |
Sbjct 1273384 ATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCG---TACATC 1273328
Query 26053 CTCCACAAACCTTCTCAA-GAGACCGTCTACAG---TATCATCAAAGAGGCTGTGGAGAT 26108
| | || || ||| ||| ||||| ||| ||| |||| |||||||| |||||
Sbjct 1273327 AACAAGAAGCC----CAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGAT 1273272
Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-C 26167
||||||||||||| | ||||||||| | || |
Sbjct 1273271 CGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAAC-GCGGATC 1273213
Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227
||||| | | ||||| |||| || ||||| || || || ||||||| || | | |
Sbjct 1273212 TCATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGA 1273153
Query 26228 GACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285
|||| |||| | ||||| ||||||| ||||| ||| || | | || ||
Sbjct 1273152 AGGAGTACA--ACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAA 1273095
Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||||||||| || ||| | || ||||| || ||
Sbjct 1273094 GACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACCA 1273059
>seq1
Length=2053059
Score = 131 bits (144), Expect = 3e-25
Identities = 599/944 (63%), Gaps = 26/944 (3%)
Strand=Plus/Minus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|| ||||| ||||| || ||| ||| ||| |||| | ||||| || ||||||
Sbjct 2015133 GCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCGGTGCAGAGG 2015074
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| | | |||||| || |||| | || || |||||||| ||| || ||||||
Sbjct 2015073 TTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCACGCATCCTTG 2015014
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
||||||| | || |||||||| | ||| | | | || || | |||||| |
Sbjct 2015013 AAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAACCAGAGCTGC 2014954
Query 221894 CTGGCGCTCACCGTCCTCTTGAC--TGCAC----CCTCGGTCTTTTCATACCCGGTATAG 221947
||| | |||||| |||| | ||| | ||||| |||||| ||| ||
Sbjct 2014953 TGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTCGTAC-------AG 2014901
Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007
||| | | |||| || || | || | || || || | ||| || |
Sbjct 2014900 AGCCT--CGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTGGGGCAGAAG 2014843
Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067
|| |||| | ||| | | ||| | || |||||| || || | ||||||| |
Sbjct 2014842 AGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGCCG 2014783
Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127
| || || || |||| ||| ||||||| ||||| ||| || | || || | |
Sbjct 2014782 TAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAG 2014723
Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187
|| || ||||| |||||||||||||| || |||| ||| | ||||| | |||| |
Sbjct 2014722 TCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCG 2014663
Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
|| ||||| || || |||| | |||| |||| |||||| | || | | |||
Sbjct 2014662 CCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCG 2014603
Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307
||||| ||||||||||| ||||| | | | ||| | | || | |||
Sbjct 2014602 TTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGAC 2014543
Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
| ||||| || |||||| || ||||| ||||| |||||| || || ||||
Sbjct 2014542 AGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATG 2014483
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427
||||| || || |||||||| | | | || ||||| ||||||| ||| | || |
Sbjct 2014482 CCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGG 2014423
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| || | ||| || |||||||| ||||| || | ||| | || | || | |
Sbjct 2014422 GTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAGAGCATGTGG 2014363
Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547
|| || || | | | | | | ||| ||| || |||||| | |||| |
Sbjct 2014362 TAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATGGCGACGCGCATGAGC 2014306
Query 222548 ATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGA----GAGCAGGTACGATTTTTC 222603
| || |||||| | |||||| || |||| | | || ||| ||||||||| ||
Sbjct 2014305 AGGTGCTGGGGGCGCTCCAC--GA-TCTTGCCG-TCGACGCGGAGGAGGTACGATCGCTC 2014250
Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647
|||||||||| | || ||||| | | ||||||||| | | |||
Sbjct 2014249 CAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCGGTCGT 2014206
Score = 104 bits (114), Expect = 4e-17
Identities = 172/245 (70%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTG 221430
||| |||||||||| |||| | | ||| | || |||| || || || |||
Sbjct 2015527 GTAGGACTCGTAGGTTCCGTCGCGCTTGGCGATGTCGTTGGACTCGGTGAGCGCGGCGAA 2015468
Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCAT 221490
|||||||||||| |||||| |||||| |||| || |||||||| |||||||||
Sbjct 2015467 GTAGATGGTCTCGAAGATCTCGGCGTTGAGCTTCTTCGCTTCGGGAGAGTCGAAGGGCAT 2015408
Query 221491 ACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCT 221550
| || | ||||||||||| || ||||| || |||| || ||||||||||| |
Sbjct 2015407 GCCGAGGAGGATGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAATGGGCCTGTGCTT 2015348
Query 221551 CCTGTTGGAAGCGGCCG--CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTG 221608
| |||| | ||| | | ||| | ||||| || ||||||||||||| | ||||
Sbjct 2015347 CATGTT-GCTGCGCCTGGCGGTCTCG-ACGGGGTAGTAGTTGACGTCGATGATGCGGTTG 2015290
Query 221609 AGGTT 221613
|||||
Sbjct 2015289 AGGTT 2015285
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 221110 GTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGT 221169
||||| |||||| || ||| || || |||||||| | | ||| | ||| || ||
Sbjct 2015788 GTGCTGGTTCACGACGGTGAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGT 2015729
Query 221170 GAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGG 221229
| |||| |||| || |||||||||||||| ||||| | |||| ||||||||||||||
Sbjct 2015728 GTACGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGG 2015669
Query 221230 TGCCACCAGCAGACTGTTGCG 221250
||||||||||| ||||||
Sbjct 2015668 CGCCACCAGCAGGGAGTTGCG 2015648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844579399360
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