Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 194 3e-44 seq6 140 6e-28 seq1 131 3e-25 >seq7 Length=1394110 Score = 194 bits (214), Expect = 3e-44 Identities = 560/854 (66%), Gaps = 30/854 (4%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||| |||| | ||| ||||| ||| || ||||| || || || Sbjct 899902 TGGAAGATGTACAAGCAGGCGGAGGCGTCATTCTGGAGCGCGGAGGAGATCGACCTCTCC 899961 Query 25540 AAGGAC---ATGGACGGCTGGT-ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTA 25595 | |||| | |||| | ||| ||||| | | | |||||||||| || || | | Sbjct 899962 ATGGACTACAAGGACTG--GGTGACGCTGAA--CGACAACGAGCAGCACTTCATCTCGCA 900017 Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||| | || ||||| || || ||||| || || ||| |||||| || || | || Sbjct 900018 CGTCCTCGCGTTCTTCGCGGCGTCTGACGGGATCGTGCTCGAGAACCTAGGCCTCCGGTT 900077 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 || | ||| || ||| |||||| | ||||||| || ||| | |||||||| Sbjct 900078 CATGAAGGACGTCCAGCTGCCGGAGGCTCGGGCGTTCTACGCGTTTCAGCTCGCCATCGA 900137 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| ||| | ||| | || ||| | | ||| || | Sbjct 900138 GAACATCCACTCGGAGACGTACGGGTTGCTCATCGACACCTACGTCAAGGACAGCGTGAA 900197 Query 25776 GAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 || ||| | ||||| | ||||| | || | |||| | | | ||||||| || Sbjct 900198 GA-AGAGGCACCTGTTCAGGGCCATTCACAACGTGCCCACGGTGGCGCGCAAGGCGCAGT 900256 Query 25835 GGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| | ||||||||| | | | ||| | | || |||||| ||||| || || Sbjct 900257 GGGCCCTCAAGTGGATCCAGTCCTCGGAGTGTTTCGC----CGAGCGACTGGTGGCGTTC 900312 Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 || ||| |||||||||||||| ||| ||| |||||| || ||||||||||||||| | Sbjct 900313 GCGTGC-GTGGAGGGCATCTTCTTCTCCGGATCGTTTTGCGCAATCTTCTGGCTCAAGAA 900371 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | ||| ||||| |||||| ||| ||||||||||||||| |||||||||||| || Sbjct 900372 GCGCGGGCTCATGCGCGGGCTCACCTTCTCCAACGAGCTCATCTCCAGGGACGAGGGCCT 900431 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA-- 26070 |||| | || || |||||||| |||||| | | |||| || ||| |||| | Sbjct 900432 CCACTGCGACTTCGCCTGCCTCCTCTACTC------CATGCT-CAAGCACCCTCTCGATC 900484 Query 26071 GAGACCGTCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 | || || ||| ||| |||| || || ||||| ||||||||||||||| Sbjct 900485 CCGCGCGGCTGCAGGAGATCGTCAAGGATGCGGTGGACATCGAGAAGGAGTTTGTGTGCG 900544 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAG 26187 ||||||||||| | || |||||| | | ||||| ||| Sbjct 900545 ATGCTCTGTCGTGCGCGCTCGTGGGCATGAAC-GCGGATCTCATGTCCGAGTACATCGAG 900603 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAAC 26247 | ||| || |||| ||| || ||||| || | | | | | | || || ||| Sbjct 900604 TTTGTCGCGGACCGCCTGATGACGCAGCTCGGCGTGGAGAAGGTGTGGAACACCCCCAAC 900663 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 |||||||| | ||||| | |||||| | | || ||| | |||||||| || | || Sbjct 900664 CCGTTCGAGTGGATGGAGATGATATCGCTCCAGGGCAAGGCGAACTTCTTCGAGCACCGG 900723 Query 26308 GTCGGCGACTATCA 26321 || | | | ||||| Sbjct 900724 GTGGACCAGTATCA 900737 >seq6 Length=1431126 Score = 140 bits (154), Expect = 6e-28 Identities = 307/456 (67%), Gaps = 21/456 (5%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 |||||| ||| | || || || ||| | ||||||||||| ||| ||| || || ||| Sbjct 1273502 CGAGCGCCTGATCGCGTTCGCGTGCA-TCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCT 1273444 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||| |||||| ||| || || ||||||||| || ||| |||||||||||| Sbjct 1273443 -CCATCTACTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 1273385 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 |||||| | |||||||| || ||| | || ||||| ||||| |||||| || || | Sbjct 1273384 ATCAGCCGCGACGAGGGCCTTCACCGCGACTTTGCGTGCCTCCTCTACTCG---TACATC 1273328 Query 26053 CTCCACAAACCTTCTCAA-GAGACCGTCTACAG---TATCATCAAAGAGGCTGTGGAGAT 26108 | | || || ||| ||| ||||| ||| ||| |||| |||||||| ||||| Sbjct 1273327 AACAAGAAGCC----CAACGAGTCCGTCGTCAGGCAGATCGTCAAGGAGGCTGTCGAGAT 1273272 Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-C 26167 ||||||||||||| | ||||||||| | || | Sbjct 1273271 CGAGAAGGAGTTTGTCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAAC-GCGGATC 1273213 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| | | ||||| |||| || ||||| || || || ||||||| || | | | Sbjct 1273212 TCATGTCCGAGTACATCGAGTTCGTCGCCGATCACCTCCTCGGCCAGCTCGGCATGTCGA 1273153 Query 26228 GACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 |||| |||| | ||||| ||||||| ||||| ||| || | | || || Sbjct 1273152 AGGAGTACA--ACGCAGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTCCAGGGTAA 1273095 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||| || ||| | || ||||| || || Sbjct 1273094 GACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACCA 1273059 >seq1 Length=2053059 Score = 131 bits (144), Expect = 3e-25 Identities = 599/944 (63%), Gaps = 26/944 (3%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || ||| ||| ||| |||| | ||||| || |||||| Sbjct 2015133 GCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGACAATCTCGGTGCAGAGG 2015074 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| | | |||||| || |||| | || || |||||||| ||| || |||||| Sbjct 2015073 TTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGCACGCATCCTTG 2015014 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 ||||||| | || |||||||| | ||| | | | || || | |||||| | Sbjct 2015013 AAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGATGGCGAACCAGAGCTGC 2014954 Query 221894 CTGGCGCTCACCGTCCTCTTGAC--TGCAC----CCTCGGTCTTTTCATACCCGGTATAG 221947 ||| | |||||| |||| | ||| | ||||| |||||| ||| || Sbjct 2014953 TGGGCCTTGACCGTCTTCTTACCCTTGCCCTCCGCCTCGTACTTTTCGTAC-------AG 2014901 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | | |||| || || | || | || || || | ||| || | Sbjct 2014900 AGCCT--CGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTTCGTTGGGGCAGAAG 2014843 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||| | ||| | | ||| | || |||||| || || | ||||||| | Sbjct 2014842 AGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGTTGGTCCACAGGCCG 2014783 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || || || |||| ||| ||||||| ||||| ||| || | || || | | Sbjct 2014782 TAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGCCAG 2014723 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || ||||| |||||||||||||| || |||| ||| | ||||| | |||| | Sbjct 2014722 TCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCTTTCCTCTTGCCG 2014663 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 || ||||| || || |||| | |||| |||| |||||| | || | | ||| Sbjct 2014662 CCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCATGGGGATGATGCCG 2014603 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 ||||| ||||||||||| ||||| | | | ||| | | || | ||| Sbjct 2014602 TTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGATGTCGTGGATGGAC 2014543 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | ||||| || |||||| || ||||| ||||| |||||| || || |||| Sbjct 2014542 AGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGAGGGTATCGTAGATG 2014483 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 ||||| || || |||||||| | | | || ||||| ||||||| ||| | || | Sbjct 2014482 CCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACAGCTGGGGGCGGGGG 2014423 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || | ||| || |||||||| ||||| || | ||| | || | || | | Sbjct 2014422 GTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGTCATCCAGCGCTCGGAGAGCATGTGG 2014363 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547 || || || | | | | | | ||| ||| || |||||| | |||| | Sbjct 2014362 TAGGTGTCGATGGCCTTCTCCA---CATCCTTGTGGATGCCGATGGCGACGCGCATGAGC 2014306 Query 222548 ATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGA----GAGCAGGTACGATTTTTC 222603 | || |||||| | |||||| || |||| | | || ||| ||||||||| || Sbjct 2014305 AGGTGCTGGGGGCGCTCCAC--GA-TCTTGCCG-TCGACGCGGAGGAGGTACGATCGCTC 2014250 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647 |||||||||| | || ||||| | | ||||||||| | | ||| Sbjct 2014249 CAGAGTCTTGTAGCCGAAGTAATCGTAGTCAAAGTCGCGGTCGT 2014206 Score = 104 bits (114), Expect = 4e-17 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTG 221430 ||| |||||||||| |||| | | ||| | || |||| || || || ||| Sbjct 2015527 GTAGGACTCGTAGGTTCCGTCGCGCTTGGCGATGTCGTTGGACTCGGTGAGCGCGGCGAA 2015468 Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCAT 221490 |||||||||||| |||||| |||||| |||| || |||||||| ||||||||| Sbjct 2015467 GTAGATGGTCTCGAAGATCTCGGCGTTGAGCTTCTTCGCTTCGGGAGAGTCGAAGGGCAT 2015408 Query 221491 ACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCT 221550 | || | ||||||||||| || ||||| || |||| || ||||||||||| | Sbjct 2015407 GCCGAGGAGGATGAAGACGTCGGCGAGGCCCTGAACGCCGAGGCCAATGGGCCTGTGCTT 2015348 Query 221551 CCTGTTGGAAGCGGCCG--CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTG 221608 | |||| | ||| | | ||| | ||||| || ||||||||||||| | |||| Sbjct 2015347 CATGTT-GCTGCGCCTGGCGGTCTCG-ACGGGGTAGTAGTTGACGTCGATGATGCGGTTG 2015290 Query 221609 AGGTT 221613 ||||| Sbjct 2015289 AGGTT 2015285 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 221110 GTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGT 221169 ||||| |||||| || ||| || || |||||||| | | ||| | ||| || || Sbjct 2015788 GTGCTGGTTCACGACGGTGAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGT 2015729 Query 221170 GAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGG 221229 | |||| |||| || |||||||||||||| ||||| | |||| |||||||||||||| Sbjct 2015728 GTACGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGG 2015669 Query 221230 TGCCACCAGCAGACTGTTGCG 221250 ||||||||||| |||||| Sbjct 2015668 CGCCACCAGCAGGGAGTTGCG 2015648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844579399360