Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10]
19 sequences; 21,109,336 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq19 782 0.0
>seq19
Length=72585
Score = 782 bits (866), Expect = 0.0
Identities = 755/964 (78%), Gaps = 4/964 (0%)
Strand=Plus/Plus
Query 160897 ACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTG-CTCGC 160955
|| || ||||| ||||| | ||||||||||| || | ||||| |||| ||| || |
Sbjct 10196 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGAT-CCCTACTTTACTTAC 10254
Query 160956 TGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCA 161014
|| || | || |||||| | || || ||| |||||| ||||| || ||||| || |
Sbjct 10255 AGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTA 10313
Query 161015 TTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTA 161074
| ||||| || || |||| || || ||||| |||||||||||||||||||||||||| |
Sbjct 10314 TCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAA 10373
Query 161075 TCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGG 161134
||||| | |||||||||||||| || ||||||||||| |||||||||||||| ||| |
Sbjct 10374 TCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTG 10433
Query 161135 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCA 161194
| || ||||| |||||||||||||||| ||| || | || | |||||| | || || |
Sbjct 10434 ATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAA 10493
Query 161195 TCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGA 161254
| | | | |||||||||||||||||||| ||||||| |||| | ||||||||||||||||
Sbjct 10494 TTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGA 10553
Query 161255 TTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTT 161314
|| ||||| |||||||||||||| || ||||| | || || ||| | || || ||
Sbjct 10554 TTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAA 10613
Query 161315 TCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACA 161374
||||||| |||||||||||||||| ||||||||| || || ||||| || ||||||| ||
Sbjct 10614 TCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCA 10673
Query 161375 TGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAG 161434
|| | || ||||| || ||||||||||| || |||||||| ||||| ||||| || || |
Sbjct 10674 TGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTG 10733
Query 161435 CAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGC 161494
| ||||| || || ||||| || ||| ||||||||||||||| || || || || || |
Sbjct 10734 CTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTC 10793
Query 161495 TGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAG 161554
| | ||||| || || || |||||||| ||| || ||||||||||| |||||||
Sbjct 10794 TCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTCGGACAAGAAG 10853
Query 161555 AAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACG 161614
||||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||
Sbjct 10854 AAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACG 10913
Query 161615 CTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCA 161674
|||| ||||||||||| || || || ||||||||||| || ||||| || | || |
Sbjct 10914 CTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAA 10973
Query 161675 TCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCA 161734
|||||||||| || |||| | || ||||| |||||||| || || ||||||||||
Sbjct 10974 TCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCA 11033
Query 161735 ACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACC 161794
|||||||| | || ||| | || || || ||||| ||||| || | | ||||
Sbjct 11034 ACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACC 11093
Query 161795 GTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACC 161854
||||| || || |||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 11094 GTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGACC 11153
Query 161855 TTGC 161858
||||
Sbjct 11154 TTGC 11157
Score = 782 bits (866), Expect = 0.0
Identities = 755/964 (78%), Gaps = 4/964 (0%)
Strand=Plus/Minus
Query 160897 ACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTG-CTCGC 160955
|| || ||||| ||||| | ||||||||||| || | ||||| |||| ||| || |
Sbjct 36947 ACTGAGAACCGTCTTTACATCGGTTGGTTCGGAGTATTAATGAT-CCCTACTTTACTTAC 36889
Query 160956 TGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCA 161014
|| || | || |||||| | || || ||| |||||| ||||| || ||||| || |
Sbjct 36888 AGCAACT-TCAGTATTCATCGTAGCATTTATTGCTGCTCCTCCTGTAGATATCGATGGTA 36830
Query 161015 TTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTA 161074
| ||||| || || |||| || || ||||| |||||||||||||||||||||||||| |
Sbjct 36829 TCCGTGAGCCAGTATCTGGATCACTTATGTACGGAAACAACATCATCTCTGGTGCTGTAA 36770
Query 161075 TCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGG 161134
||||| | |||||||||||||| || ||||||||||| |||||||||||||| ||| |
Sbjct 36769 TCCCTACATCTAACGCTATCGGACTTCACTTCTACCCAATCTGGGAAGCAGCTTCTCTTG 36710
Query 161135 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCA 161194
| || ||||| |||||||||||||||| ||| || | || | |||||| | || || |
Sbjct 36709 ATGAGTGGCTTTACAACGGTGGTCCTTACCAGCTTATCGTATGTCACTTCTTCATCGGAA 36650
Query 161195 TCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGA 161254
| | | | |||||||||||||||||||| ||||||| |||| | ||||||||||||||||
Sbjct 36649 TTTGTTCATACATGGGTCGTGAGTGGGAGCTTTCTTTCCGTTTAGGAATGCGTCCTTGGA 36590
Query 161255 TTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTT 161314
|| ||||| |||||||||||||| || ||||| | || || ||| | || || ||
Sbjct 36589 TTGCTGTAGCTTACTCTGCTCCTGTAGCAGCAGCAACAGCTGTATTCATCGTATACCCAA 36530
Query 161315 TCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACA 161374
||||||| |||||||||||||||| ||||||||| || || ||||| || ||||||| ||
Sbjct 36529 TCGGTCAGGGTTCTTTCTCTGATGGAATGCCTCTTGGTATTTCTGGAACTTTCAACTTCA 36470
Query 161375 TGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAG 161434
|| | || ||||| || ||||||||||| || |||||||| ||||| ||||| || || |
Sbjct 36469 TGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTG 36410
Query 161435 CAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGC 161494
| ||||| || || ||||| || ||| ||||||||||||||| || || || || || |
Sbjct 36409 CTGGTGTATTCGGTGGTTCACTTTTCTCTGCAATGCACGGTTCACTCGTAACTTCATCTC 36350
Query 161495 TGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAG 161554
| | ||||| || || || |||||||| ||| || ||||||||||| |||||||
Sbjct 36349 TCATCCGTGAGACTACTGAGAACGAGTCTGCAAACGCAGGATACAAGTTCGGACAAGAAG 36290
Query 161555 AAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACG 161614
||||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||
Sbjct 36289 AAGAGACTTACAACATCGTAGCTGCACACGGTTACTTCGGACGTCTTATCTTCCAATACG 36230
Query 161615 CTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCA 161674
|||| ||||||||||| || || || ||||||||||| || ||||| || | || |
Sbjct 36229 CTTCATTCAACAACTCACGTTCACTCCACTTCTTCCTCGCAATCTGGCCAGTAATGGGAA 36170
Query 161675 TCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCA 161734
|||||||||| || |||| | || ||||| |||||||| || || ||||||||||
Sbjct 36169 TCTGGTTCACAGCTATGGGTATTTCAACTATGGCTTTCAACCTTAACGGATTCAACTTCA 36110
Query 161735 ACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACC 161794
|||||||| | || ||| | || || || ||||| ||||| || | | ||||
Sbjct 36109 ACCAGTCTGTAGTAGATTCAAACGGACGTGTAATTAACACATGGGCTGATATCGTAAACC 36050
Query 161795 GTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACC 161854
||||| || || |||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 36049 GTGCTAACCTCGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGACC 35990
Query 161855 TTGC 161858
||||
Sbjct 35989 TTGC 35986
Score = 610 bits (676), Expect = 7e-170
Identities = 749/1020 (73%), Gaps = 2/1020 (0%)
Strand=Plus/Plus
Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170
|| |||||||| | | |||||||||||||| | || |||||||| || || || |||
Sbjct 1989 GGATGGTTTGACAACGTAGACGACTGGCTTAAGCGTGATCGTTTCGTATTCGTAGGTTGG 2048
Query 162171 TCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229
|| ||| || || || |||||| ||| || |||| |||| || ||| ||||||| ||
Sbjct 2049 TCAGGAATT-TTATTATTCCCATGTGCATACTTTGCAGTTGGTGGATGGTTTACTGGAAC 2107
Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 162289
|| ||||| || ||||| || ||||| | || ||||| || |||||||| ||
Sbjct 2108 AACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAGGGATGTAA 2167
Query 162290 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 162349
||| ||||| ||||||| || || ||| | || ||||| ||| || ||||| || ||
Sbjct 2168 CTTCCTTACATCGGCAGTATCAACACCATCTAACAGTATGGCTCACTCACTTCTTCTCCT 2227
Query 162350 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 162409
||||| || || | ||||| || |||| || ||||| || ||||| ||| | |||||
Sbjct 2228 TTGGGGACCAGAAGCACAAGGTGAGTTCACACGTTGGTGTCAGCTTGGTGGATTATGGAC 2287
Query 162410 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 162469
|| || || || ||||| || || | | | || || || ||||| || || |||||| |
Sbjct 2288 ATTCGTAGCACTTCACGGTGCATTCGGATTAATCGGATTTATGCTCCGTCAATTTGAAAT 2347
Query 162470 GGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGT 162529
||||| | |||||||| ||||| || ||||| ||||||| ||||| |||||
Sbjct 2348 TGCACGTGCAGTACAAATTCGTCCGTACAACGCGATTGCATTCTCAGCACCTATCGCTGT 2407
Query 162530 ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTC 162589
||| || ||| || ||||| || || | |||||||| |||||||| ||||| ||
Sbjct 2408 ATTTGTATCTGTATTCCTTATTTACCCACTTGGACAATCAGGATGGTTCTTTGCACCTTC 2467
Query 162590 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 162649
|| || || || | ||| ||||| ||| | || ||| ||||||||||||| ||||||||
Sbjct 2468 ATTTGGTGTAGCGGGAATTTTCCGTTTCATTCTTTTCTTCCAAGGGTTCCACAACTGGAC 2527
Query 162650 GCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGC 162709
|| || || || ||||||||||| ||||| ||| | ||||| | ||| | || | |||
Sbjct 2528 ACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTTGGAGCAGCACTTCTTTGTGC 2587
Query 162710 TATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTT 162769
||||| |||| || || || || ||||| | ||||||||| || ||||||||||
Sbjct 2588 GATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACTTT 2647
Query 162770 TAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTT 162829
|||||| || | || || | ||||| || || || ||||| || || ||||| ||
Sbjct 2648 CCGTGCATTTAACCCAACTCAAGCTGAAGAGACTTACTCAATGGTAACAGCAAACCGTTT 2707
Query 162830 CTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCT 162889
||||||||||||||||||| | ||||| ||||||||||||| | || |||||||||||
Sbjct 2708 CTGGTCACAGATTTTCGGTGTAGCTTTCTCTAACAAGCGTTGGCTTCACTTCTTTATGCT 2767
Query 162890 CTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAA 162949
|| || || || | || | |||| | | ||| || | ||| | || || ||
Sbjct 2768 TTTCGTACCTGTAACAGGGTTATGGATGTCAGCACTTGGTGTTGTAGGATTAGCACTTAA 2827
Query 162950 TCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGA 163009
|| ||||| |||||||| ||||| ||||| | ||||| || ||||| |||||||||||
Sbjct 2828 CCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCAGCTGAAGATCCTGAGTTTGA 2887
Query 163010 GACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGT 163069
|| ||||| || ||||| |||||||| || ||||| |||| |||||| | ||| |
Sbjct 2888 AACATTCTACACTAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCA 2947
Query 163070 GGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129
|| || |||||||| ||| |||| |||||||| ||||| | ||| | || ||||||||
Sbjct 2948 AGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCT 3007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547747069910040
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