Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq19 547 2e-151 >seq19 Length=72585 Score = 547 bits (606), Expect = 2e-151 Identities = 720/992 (73%), Gaps = 12/992 (1%) Strand=Plus/Minus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 || || |||||||| ||||| |||||||||||||| ||||| | || |||||||| | | Sbjct 11151 TCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGGTTAGCACGG 11092 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCC---TCCAGCTGCTACAATGGATTGG 17957 || | | ||||||||||| | || |||| | | || ||||| || ||| Sbjct 11091 TTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTACA---GACTGG 11035 Query 17958 TTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCAT 18017 |||||||||||||| || || || ||||||||||| || || ||||||| || | ||| Sbjct 11034 TTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTGAACCAG 10975 Query 18018 ATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTA 18077 || | | || ||||| || | |||||| || || | ||||| || | Sbjct 10974 ATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTGAATGAA 10915 Query 18078 GCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCT 18137 || || |||||||| || | || ||||| || || || || || || || || |||||| Sbjct 10914 GCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAAGTCTCT 10855 Query 18138 TCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATA 18197 |||||||| || || || ||||| ||| |||||| |||||| || || | || Sbjct 10854 TCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCTCACGGATG 10795 Query 18198 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 18257 || || ||||| || || |||||||| |||| ||| | | ||||||||||| || Sbjct 10794 AGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGAATACACCA 10735 Query 18258 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAAC 18317 |||||||| ||||| ||||| || ||||||||||| ||||| || || |||||||||| | Sbjct 10734 GCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGATC 10675 Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 ||||| |||||||| || ||||||||||||||| |||||||||||| || || || Sbjct 10674 ATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAACCCTGACCG 10615 Query 18378 AAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAA 18437 | || || |||| ||||| | || |||||||| || || || ||||| ||| | Sbjct 10614 ATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAGCTACAGCA 10555 Query 18438 ATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCG 18497 ||||| || ||||| |||| | || ||| ||||| | || |||||||| | Sbjct 10554 ATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGTATGAACAA 10495 Query 18498 ATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 18557 || ||||||| ||||| | || || || || || || || ||||| || | |||||| Sbjct 10494 ATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAAGCCACTCA 10435 Query 18558 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 18617 || || | || |||||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 10434 TCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAGATGTAGGG 10375 Query 18618 ACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAG-GCTCCTGAGACAGGCTCACG 18676 | | || || || |||||||||||||| || | |||| | ||| || || |||||||| Sbjct 10374 ATTACAGCACCAGAGATGATGTTGTTTCCGTACA-TAAGTGATCCAGATACTGGCTCACG 10316 Query 18677 AATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGC 18736 |||||||| || || || ||||||||||||| |||||| | | ||| ||| || ||| Sbjct 10315 GATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTGAAGTTGC 10256 Query 18737 GGTTA--AAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTT 18794 || | ||||| ||||||||| | ||| || ||||| || | ||| || ||||| | Sbjct 10255 TGTAAGTAAAGT--AGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGTTCTCA 10198 Query 18795 GTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 || |||| ||| ||| |||| | |||| Sbjct 10197 GTTGAAGTAATCCATGAACAAAAACGTCCCCA 10166 Score = 547 bits (606), Expect = 2e-151 Identities = 720/992 (73%), Gaps = 12/992 (1%) Strand=Plus/Plus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 || || |||||||| ||||| |||||||||||||| ||||| | || |||||||| | | Sbjct 35992 TCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCGAGGTTAGCACGG 36051 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCC---TCCAGCTGCTACAATGGATTGG 17957 || | | ||||||||||| | || |||| | | || ||||| || ||| Sbjct 36052 TTTACGATATCAGCCCATGTGTTAATTACACGTCCGTTTGAATCTACTACA---GACTGG 36108 Query 17958 TTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCAT 18017 |||||||||||||| || || || ||||||||||| || || ||||||| || | ||| Sbjct 36109 TTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTTGAAATACCCATAGCTGTGAACCAG 36168 Query 18018 ATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTA 18077 || | | || ||||| || | |||||| || || | ||||| || | Sbjct 36169 ATTCCCATTACTGGCCAGATTGCGAGGAAGAAGTGGAGTGAACGTGAGTTGTTGAATGAA 36228 Query 18078 GCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCT 18137 || || |||||||| || | || ||||| || || || || || || || || |||||| Sbjct 36229 GCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGTGCAGCTACGATGTTGTAAGTCTCT 36288 Query 18138 TCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATA 18197 |||||||| || || || ||||| ||| |||||| |||||| || || | || Sbjct 36289 TCTTCTTGTCCGAACTTGTATCCTGCGTTTGCAGACTCGTTCTCAGTAGTCTCACGGATG 36348 Query 18198 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 18257 || || ||||| || || |||||||| |||| ||| | | ||||||||||| || Sbjct 36349 AGAGATGAAGTTACGAGTGAACCGTGCATTGCAGAGAAAAGTGAACCACCGAATACACCA 36408 Query 18258 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAAC 18317 |||||||| ||||| ||||| || ||||||||||| ||||| || || |||||||||| | Sbjct 36409 GCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGATC 36468 Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 ||||| |||||||| || ||||||||||||||| |||||||||||| || || || Sbjct 36469 ATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATTCCATCAGAGAAAGAACCCTGACCG 36528 Query 18378 AAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAA 18437 | || || |||| ||||| | || |||||||| || || || ||||| ||| | Sbjct 36529 ATTGGGTATACGATGAATACAGCTGTTGCTGCTGCTACAGGAGCAGAGTAAGCTACAGCA 36588 Query 18438 ATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCG 18497 ||||| || ||||| |||| | || ||| ||||| | || |||||||| | Sbjct 36589 ATCCAAGGACGCATTCCTAAACGGAAAGAAAGCTCCCACTCACGACCCATGTATGAACAA 36648 Query 18498 ATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 18557 || ||||||| ||||| | || || || || || || || ||||| || | |||||| Sbjct 36649 ATTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGACCACCGTTGTAAAGCCACTCA 36708 Query 18558 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 18617 || || | || |||||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 36709 TCAAGAGAAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTAGATGTAGGG 36768 Query 18618 ACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAG-GCTCCTGAGACAGGCTCACG 18676 | | || || || |||||||||||||| || | |||| | ||| || || |||||||| Sbjct 36769 ATTACAGCACCAGAGATGATGTTGTTTCCGTACA-TAAGTGATCCAGATACTGGCTCACG 36827 Query 18677 AATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGC 18736 |||||||| || || || ||||||||||||| |||||| | | ||| ||| || ||| Sbjct 36828 GATACCATCGATATCTACAGGAGGAGCAGCAATAAATGCTACGATGAATACTGAAGTTGC 36887 Query 18737 GGTTA--AAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTT 18794 || | ||||| ||||||||| | ||| || ||||| || | ||| || ||||| | Sbjct 36888 TGTAAGTAAAGT--AGGGATCATTAATACTCCGAACCAACCGATGTAAAGACGGTTCTCA 36945 Query 18795 GTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 || |||| ||| ||| |||| | |||| Sbjct 36946 GTTGAAGTAATCCATGAACAAAAACGTCCCCA 36977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318365858786